A graph-based cell tracking algorithm with few manually tunable parameters and automated segmentation error correction

Katharina Löffler; Tim Scherr; Ralf Mikut

doi:10.1371/journal.pone.0249257

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Open Access

Peer-reviewed

Research Article

A graph-based cell tracking algorithm with few manually tunable parameters and automated segmentation error correction

Katharina Löffler ,

Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Visualization, Writing – original draft, Writing – review & editing

* E-mail: katharina.loeffler@kit.edu

Affiliations Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany, Institute of Biological and Chemical Systems - Biological Information Processing, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany

https://orcid.org/0000-0001-9769-3517

⨯
Tim Scherr,

Roles Software, Writing – review & editing

Affiliation Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany

https://orcid.org/0000-0001-8755-2825

⨯
Ralf Mikut

Roles Conceptualization, Funding acquisition, Project administration, Supervision, Writing – review & editing

Affiliation Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany

https://orcid.org/0000-0001-9100-5496

⨯

A graph-based cell tracking algorithm with few manually tunable parameters and automated segmentation error correction

Katharina Löffler,
Tim Scherr,
Ralf Mikut

Published: September 7, 2021
https://doi.org/10.1371/journal.pone.0249257

About the Authors

Katharina Löffler

Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Visualization, Writing – original draft, Writing – review & editing

* E-mail: katharina.loeffler@kit.edu

Affiliations Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany, Institute of Biological and Chemical Systems - Biological Information Processing, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany

https://orcid.org/0000-0001-9769-3517

Tim Scherr

Roles Software, Writing – review & editing

Affiliation Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany

https://orcid.org/0000-0001-8755-2825

Ralf Mikut

Roles Conceptualization, Funding acquisition, Project administration, Supervision, Writing – review & editing

Affiliation Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany

https://orcid.org/0000-0001-9100-5496

Competing Interests

The authors have declared that no competing interests exist.

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Mitosis
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Algorithms
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Cell cycle and cell division
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Imaging techniques
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Cell movement
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Kalman filter
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Image processing
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Support vector machines
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