Automated classification of bacterial cell sub-populations with convolutional neural networks

Denis Tamiev; Paige E. Furman; Nigel F. Reuel

doi:10.1371/journal.pone.0241200

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Open Access

Peer-reviewed

Research Article

Automated classification of bacterial cell sub-populations with convolutional neural networks

Denis Tamiev,

Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

Affiliation Department of Biochemistry Biophysics and Molecular Biology, Iowa State University, Ames, Iowa, United States of America
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Paige E. Furman,

Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

Affiliation Department of Biochemistry Biophysics and Molecular Biology, Iowa State University, Ames, Iowa, United States of America
⨯
Nigel F. Reuel

Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

* E-mail: reuel@iastate.edu

Affiliation Department of Chemical and Biological Engineering, Iowa State University, Ames, Iowa, United States of America

https://orcid.org/0000-0003-3438-2919

⨯

Automated classification of bacterial cell sub-populations with convolutional neural networks

Denis Tamiev,
Paige E. Furman,
Nigel F. Reuel

Published: October 26, 2020
https://doi.org/10.1371/journal.pone.0241200
See the preprint

About the Authors

Denis Tamiev

Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

Affiliation Department of Biochemistry Biophysics and Molecular Biology, Iowa State University, Ames, Iowa, United States of America

Paige E. Furman

Affiliation Department of Biochemistry Biophysics and Molecular Biology, Iowa State University, Ames, Iowa, United States of America

Nigel F. Reuel

* E-mail: reuel@iastate.edu

Affiliation Department of Chemical and Biological Engineering, Iowa State University, Ames, Iowa, United States of America

https://orcid.org/0000-0003-3438-2919

Competing Interests

The authors have declared that no competing interests exist.

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Fluorescence imaging
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Bacteria
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Fluorescence microscopy
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Neural networks
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Total cell counting
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Bacillus subtilis
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Cell enumeration techniques
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Algorithms
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