About the Authors

Louis Grandjean

Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

l.grandjean@imperial.ac.uk

Affiliations University College London, Institute of Child Health, London, United Kingdom, Academic Health Sciences Centre, Imperial College, London, United Kingdom, Universidad Peruana Cayetano Heredia, Avenida Honorio Delgado, San Martin de Porras, Lima, Peru, Wellcome Trust Sanger Institute, Genome Campus, Hinxton, Cambridge, United Kingdom

Robert H. Gilman

Roles Conceptualization, Data curation, Funding acquisition, Investigation, Methodology, Project administration, Supervision, Visualization, Writing – original draft, Writing – review & editing

Affiliations Universidad Peruana Cayetano Heredia, Avenida Honorio Delgado, San Martin de Porras, Lima, Peru, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, United States of America

Tomatada Iwamoto

Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Writing – original draft, Writing – review & editing

Affiliation Department of Infectious Diseases, Kobe Institute of Health, Chuo-ku, Kobe, Japan

Claudio U. Köser

Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Validation, Visualization, Writing – original draft, Writing – review & editing

Affiliation Department of Medicine, University of Cambridge, Cambridge, United Kingdom

Jorge Coronel

Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Resources, Validation, Visualization, Writing – original draft, Writing – review & editing

Affiliation Universidad Peruana Cayetano Heredia, Avenida Honorio Delgado, San Martin de Porras, Lima, Peru

Mirko Zimic

Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Resources, Validation, Writing – original draft

Affiliation Universidad Peruana Cayetano Heredia, Avenida Honorio Delgado, San Martin de Porras, Lima, Peru

M. Estee Török

Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Validation, Writing – original draft, Writing – review & editing

Affiliation Wellcome Trust Sanger Institute, Genome Campus, Hinxton, Cambridge, United Kingdom

Diepreye Ayabina

Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

Affiliation Faculty of Natural Sciences, Department of Mathematics, Imperial College London, London, United Kingdom

Michelle Kendall

Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Validation, Visualization, Writing – original draft, Writing – review & editing

Affiliation Faculty of Natural Sciences, Department of Mathematics, Imperial College London, London, United Kingdom

Christophe Fraser

Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Supervision, Visualization, Writing – original draft, Writing – review & editing

Affiliation Department of Infectious Diseases Epidemiology, Imperial College, London, United Kingdom

Simon Harris

Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Resources, Supervision, Visualization, Writing – original draft, Writing – review & editing

Affiliation Wellcome Trust Sanger Institute, Genome Campus, Hinxton, Cambridge, United Kingdom

Julian Parkhill

Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

Affiliation Wellcome Trust Sanger Institute, Genome Campus, Hinxton, Cambridge, United Kingdom

Sharon J. Peacock

Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

Affiliations Wellcome Trust Sanger Institute, Genome Campus, Hinxton, Cambridge, United Kingdom, London School of Tropical Medicine and Hygiene, London, United Kingdom

David A. J. Moore

Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

Affiliation London School of Tropical Medicine and Hygiene, London, United Kingdom

Caroline Colijn

Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

Affiliation Faculty of Natural Sciences, Department of Mathematics, Imperial College London, London, United Kingdom

Competing Interests

The Bill & Melinda Gates Foundation and Janssen Pharmaceutica covered CUK’s travel and accommodation to present at meetings. The European Society of Mycobacteriology awarded CUK the Gertrud Meissner Award, which is sponsored by Hain Lifescience. CUK has collaborated with Illumina Inc. on a number of scientific projects and is a consultant for the Foundation for Innovative New Diagnostic but this does not alter our adherence to PLOS ONE policies on sharing data and materials.