DNABP: Identification of DNA-Binding Proteins Based on Feature Selection Using a Random Forest and Predicting Binding Residues

Xin Ma; Jing Guo; Xiao Sun

doi:10.1371/journal.pone.0167345

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Open Access

Peer-reviewed

Research Article

DNABP: Identification of DNA-Binding Proteins Based on Feature Selection Using a Random Forest and Predicting Binding Residues

Xin Ma ,

* E-mail: maxin@nau.edu.cn

Affiliation School of Science, Nanjing Audit University, Nanjing, China

http://orcid.org/0000-0002-8101-7271

⨯
Jing Guo,

Affiliation State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing, China
⨯
Xiao Sun

Affiliation State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing, China
⨯

DNABP: Identification of DNA-Binding Proteins Based on Feature Selection Using a Random Forest and Predicting Binding Residues

Xin Ma,
Jing Guo,
Xiao Sun

Published: December 1, 2016
https://doi.org/10.1371/journal.pone.0167345

About the Authors

Xin Ma

* E-mail: maxin@nau.edu.cn

Affiliation School of Science, Nanjing Audit University, Nanjing, China

http://orcid.org/0000-0002-8101-7271

Jing Guo

Affiliation State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing, China

Xiao Sun

Affiliation State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing, China

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceptualization: XM XS. Data curation: XM. Formal analysis: XM. Funding acquisition: XM. Investigation: XM. Methodology: XM. Project administration: XM JG. Resources: XM. Software: JG. Supervision: XS. Validation: XM. Visualization: XM. Writing – original draft: XM. Writing – review & editing: XM.

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DNA-binding proteins
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Physicochemical properties
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Forecasting
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Protein sequencing
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Molecular mass
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Support vector machines
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Machine learning algorithms
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Protein structure prediction
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