Incorporating Distant Sequence Features and Radial Basis Function Networks to Identify Ubiquitin Conjugation Sites

Tzong-Yi Lee; Shu-An Chen; Hsin-Yi Hung; Yu-Yen Ou

doi:10.1371/journal.pone.0017331

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Open Access

Peer-reviewed

Research Article

Incorporating Distant Sequence Features and Radial Basis Function Networks to Identify Ubiquitin Conjugation Sites

Tzong-Yi Lee ,

Contributed equally to this work with: Tzong-Yi Lee, Shu-An Chen

* E-mail: francis@saturn.yzu.edu.tw (TYL); yien@csie.org (YYO)

Affiliation Department of Computer Science and Engineering, Yuan Ze University, Chung-Li, Taiwan
⨯
Shu-An Chen ,

Contributed equally to this work with: Tzong-Yi Lee, Shu-An Chen

Affiliation Department of Computer Science and Engineering, Yuan Ze University, Chung-Li, Taiwan
⨯
Hsin-Yi Hung,

Affiliation Department of Computer Science and Engineering, Yuan Ze University, Chung-Li, Taiwan
⨯
Yu-Yen Ou

* E-mail: francis@saturn.yzu.edu.tw (TYL); yien@csie.org (YYO)

Affiliation Department of Computer Science and Engineering, Yuan Ze University, Chung-Li, Taiwan
⨯

Incorporating Distant Sequence Features and Radial Basis Function Networks to Identify Ubiquitin Conjugation Sites

Tzong-Yi Lee,
Shu-An Chen,
Hsin-Yi Hung,
Yu-Yen Ou

Published: March 9, 2011
https://doi.org/10.1371/journal.pone.0017331

About the Authors

Tzong-Yi Lee

Contributed equally to this work with: Tzong-Yi Lee, Shu-An Chen

* E-mail: francis@saturn.yzu.edu.tw (TYL); yien@csie.org (YYO)

Affiliation Department of Computer Science and Engineering, Yuan Ze University, Chung-Li, Taiwan

Shu-An Chen

Contributed equally to this work with: Tzong-Yi Lee, Shu-An Chen

Affiliation Department of Computer Science and Engineering, Yuan Ze University, Chung-Li, Taiwan

Hsin-Yi Hung

Affiliation Department of Computer Science and Engineering, Yuan Ze University, Chung-Li, Taiwan

Yu-Yen Ou

* E-mail: francis@saturn.yzu.edu.tw (TYL); yien@csie.org (YYO)

Affiliation Department of Computer Science and Engineering, Yuan Ze University, Chung-Li, Taiwan

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: TYL SAC HYH YYO. Performed the experiments: TYL SAC HYH YYO. Analyzed the data: TYL SAC HYH YYO. Contributed reagents/materials/analysis tools: TYL SAC HYH YYO. Wrote the paper: TYL SAC YYO.

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Protein sequencing
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Lysine
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Protein structure prediction
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Protein structure
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Physicochemical properties
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Conjugated proteins
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Forecasting
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Ubiquitin ligases
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