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Ten simple rules for fostering creativity in research labs

Matthias C. Rillig

Perspective | published 14 Feb 2025 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012788

Views: 3018Citations: 0Saves: 10 • Shares: 25

Ten simple rules to complete successfully a computational MSc thesis project

Edoardo Saccenti, Cristina Furlan

Education | published 28 Jan 2025 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012756

Views: 1253Citations: 0Saves: 4 • Shares: 2

The art of seeing the elephant in the room: 2D embeddings of single-cell data do make sense

Jan Lause, Philipp Berens, Dmitry Kobak

Formal Comment | published 02 Oct 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012403

Views: 2511Citations: 6Saves: 0 • Shares: 0

Celebrating a body of work

Jason A. Papin, Feilim Mac Gabhann, Virginia E. Pitzer

Editorial | published 26 Sep 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012441

Views: 744Citations: 0Saves: 0 • Shares: 6

Ten “simple” rules for non-Indigenous researchers engaging Indigenous communities in Arctic research

Joy M. O’Brien, Nathan Blais, Carmen Butler, Natalie White, Ash Bustead, Collin Figler, McKenna Wells, George Anderson, Anna Yuhas, Jessica Gilman Ernakovich

Education | published 27 Jun 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012093

Views: 1492Citations: 0Saves: 6 • Shares: 7

Ten simple rules for computational biologists collaborating with wet lab researchers

Mark D. Robinson, Peiying Cai, Martin Emons, Reto Gerber, Pierre-Luc Germain, Samuel Gunz, Siyuan Luo, Giulia Moro, Emanuel Sonder, Anthony Sonrel, Jiayi Wang, David Wissel, Izaskun Mallona

Education | published 20 Jun 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012174

Views: 1750Citations: 0Saves: 15 • Shares: 7

Ten recommendations for hosting a Diversity, Equity, Inclusion, and Justice (DEIJ) journal club

Roberto Efraín Díaz, Stephanie A. Wankowicz

Education | published 06 Jun 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012166

Views: 1250Citations: 0Saves: 19 • Shares: 6

Ten simple rules for leading a successful undergraduate-intensive research lab

KJE Hickman, Geoffrey Zahn

Education | published 11 Apr 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1011994

Views: 2400Citations: 0Saves: 7 • Shares: 1

Ten simple rules to leverage large language models for getting grants

Elizabeth Seckel, Brandi Y. Stephens, Fatima Rodriguez

Education | published 01 Mar 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1011863

Views: 11273Citations: 4Saves: 47 • Shares: 10

CyVerse: Cyberinfrastructure for open science

Tyson L. Swetnam, Parker B. Antin, Ryan Bartelme, Alexander Bucksch, David Camhy, Greg Chism, Illyoung Choi, Amanda M. Cooksey, Michele Cosi, Cindy Cowen, Michael Culshaw-Maurer, Robert Davey, Sean Davey, Upendra Devisetty, Tony Edgin, Andy Edmonds, Dmitry Fedorov, Jeremy Frady, John Fonner, Jeffrey K. Gillan, Iqbal Hossain, Blake Joyce, Konrad Lang, Tina Lee, Shelley Littin, Ian McEwen, Nirav Merchant, David Micklos, Andrew Nelson, Ashley Ramsey, Sarah Roberts, Paul Sarando, Edwin Skidmore, Jawon Song, Mary Margaret Sprinkle, Sriram Srinivasan, Dan Stanzione, Jonathan D. Strootman, Sarah Stryeck, Reetu Tuteja, Matthew Vaughn, Mojib Wali, Mariah Wall, Ramona Walls, Liya Wang, Todd Wickizer, Jason Williams, John Wregglesworth, Eric Lyons

Software | published 07 Feb 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1011270

Views: 2406Citations: 12Saves: 39 • Shares: 5

Ten simple rules for designing graphical abstracts

Helena Klara Jambor, Martin Bornhäuser

Perspective | published 01 Feb 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1011789

Views: 17935Citations: 8Saves: 40 • Shares: 115

Ten simple rules for using large language models in science, version 1.0

Gabriel Reuben Smith, Carolina Bello, Lalasia Bialic-Murphy, Emily Clark, Camille S. Delavaux, Camille Fournier de Lauriere, Johan van den Hoogen, Thomas Lauber, Haozhi Ma, Daniel S. Maynard, Matthew Mirman, Lidong Mo, Dominic Rebindaine, Josephine Elena Reek, Leland K. Werden, Zhaofei Wu, Gayoung Yang, Qingzhou Zhao, Constantin M. Zohner, Thomas W. Crowther

Education | published 31 Jan 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1011767

Views: 7207Citations: 2Saves: 48 • Shares: 32

Ten simple rules for students navigating summer research experiences for undergraduates (REU) programs: From application to program completion

Maria Manzanares, Courtney Peña, Kayla C. Kobak, Miranda B. Stratton

Education | published 09 Nov 2023 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1011573

Views: 2925Citations: 1Saves: 19 • Shares: 14

Evaluating a large language model’s ability to solve programming exercises from an introductory bioinformatics course

Stephen R. Piccolo, Paul Denny, Andrew Luxton-Reilly, Samuel H. Payne, Perry G. Ridge

Research Article | published 28 Sep 2023 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1011511

Views: 3364Citations: 31Saves: 119 • Shares: 385

Ten quick tips for harnessing the power of ChatGPT in computational biology

Tiago Lubiana, Rafael Lopes, Pedro Medeiros, Juan Carlo Silva, Andre Nicolau Aquime Goncalves, Vinicius Maracaja-Coutinho, Helder I. Nakaya

Education | published 10 Aug 2023 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1011319

Views: 12872Citations: 48Saves: 123 • Shares: 122

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