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Rules, hypergraphs, and probabilities: The three-level analysis of chemical reaction systems and other stochastic stoichiometric population processes

Table 2

Rule symbols paired with the conversions the rules make on 1-complexes or 2-complexes of sugar-monophosphates.

Legend: AlKe (aldose-ketose); KeAl (ketose-aldose); TAL (transaldolase); TKL (transketolase); AL (aldolase); PHL (phosphohydrolase). In the fifth line, TAL ∘ TKL indicates function composition: the output of a TKL reaction is input to the TAL reaction. In the sixth line, AlKe ⊕ KeAl indicates parallel application, AlKe on input An and KeAl on input Kn+1.

Table 2

doi: https://doi.org/10.1371/journal.pcsy.0000022.t002