Rules, hypergraphs, and probabilities: The three-level analysis of chemical reaction systems and other stochastic stoichiometric population processes
Fig 2
The diagram layout to be used.
Filled circles are species in the hypergraph notation following Feinberg [18]. Aldose (red) and ketose (blue) monophosphates, and bisphosphates (green), are arranged in the series shown, and the carbon number of the sugar is indicated in the outer ring. All edges generated for these compounds by network expansion from the rules in Table 1 are shown in doubly-bipartite graph form. Open circles are complexes, heavy lines are reactions, and light lines indicate stoichiometry.