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Mammalian genomics  
PLOS Pathogens  
Asymptomatic neonatal herpes simplex virus infection in mice leads to persistent CNS infection and long-term cognitive impairment

Abigail J. Dutton, Evelyn M. Turnbaugh, Chaya D. Patel, Callaghan R. Garland, Sean A. Taylor, Roberto Alers-Velazquez, David M. Knipe, Katherine M. Nautiyal, David A. Leib

Research Article | published 07 Feb 2025 PLOS Pathogens

https://doi.org/10.1371/journal.ppat.1012935

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Homeobox protein MSX-1 restricts hepatitis B virus by promoting ubiquitin-independent proteasomal degradation of HBx protein

Qian Qiu, Zihan He, Jing Liu, Huijun Xu, Jinyu Wang, Nannan Liu, Ning Kang, Shaokun Pan, Weien Yu, Zixiang Gao, Shimei Zhang, Yang Yang, Qiang Deng, Youhua Xie, Jiming Zhang, Zhongliang Shen

Research Article | published 30 Jan 2025 PLOS Pathogens

https://doi.org/10.1371/journal.ppat.1012897

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Turning the needle into the haystack: Culture-independent amplification of complex microbial genomes directly from their native environment

Olivia A. Pilling, Sesh A. Sundararaman, Dustin Brisson, Daniel P. Beiting

Review | published 12 Sep 2024 PLOS Pathogens

https://doi.org/10.1371/journal.ppat.1012418

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Genomic transfers help to decipher the ancient evolution of filoviruses and interactions with vertebrate hosts

Derek J. Taylor, Max H. Barnhart

Research Article | published 03 Sep 2024 PLOS Pathogens

https://doi.org/10.1371/journal.ppat.1011864

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Marine sponge microbe provides insights into evolution and virulence of the tubercle bacillus

Sacha J. Pidot, Stephan Klatt, Louis S. Ates, Wafa Frigui, Fadel Sayes, Laleh Majlessi, Hiroshi Izumi, Ian R. Monk, Jessica L. Porter, Vicki Bennett-Wood, Torsten Seemann, Ashley Otter, George Taiaroa, Gregory M. Cook, Nicholas West, Nicholas J. Tobias, John A. Fuerst, Michael D. Stutz, Marc Pellegrini, Malcolm McConville, Roland Brosch, Timothy P. Stinear

Research Article | published 29 Aug 2024 PLOS Pathogens

https://doi.org/10.1371/journal.ppat.1012440

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Determinants of pegivirus persistence, cross-species infection, and adaptation in the laboratory mouse

Kylie Nennig, Satyapramod Murthy, Sara Maloney, Teressa M. Shaw, Mark Sharobim, Eduard Matkovic, Simi Fadiran, Malorie Larsen, Mitchell D. Ramuta, Arthur S. Kim, John R. Teijaro, Joe Grove, Matthew Stremlau, Himanshu Sharma, Sheetal Trivedi, Michael J. Blum, David H. O’Connor, Jennifer L. Hyde, Jack T. Stapleton, Amit Kapoor, Adam L. Bailey

Research Article | published 28 Aug 2024 PLOS Pathogens

https://doi.org/10.1371/journal.ppat.1012436

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Bacteriophage-driven emergence and expansion of Staphylococcus aureus in rodent populations

Gonzalo Yebra, Daniel Mrochen, Stefan Fischer, Florian Pfaff, Rainer G. Ulrich, Kathleen Pritchett-Corning, Silva Holtfreter, J. Ross Fitzgerald

Research Article | published 24 Jul 2024 PLOS Pathogens

https://doi.org/10.1371/journal.ppat.1012378

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Pathogenic differences of cynomolgus macaques after Taï Forest virus infection depend on the viral stock propagation

Paige Fletcher, Chad S. Clancy, Kyle L. O’Donnell, Brianna M. Doratt, Delphine C. Malherbe, Joseph F. Rhoderick, Friederike Feldmann, Patrick W. Hanley, Ayato Takada, Ilhem Messaoudi, Andrea Marzi

Research Article | published 11 Jun 2024 PLOS Pathogens

https://doi.org/10.1371/journal.ppat.1012290

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The anti-apoptotic function of HSV-1 LAT in neuronal cell cultures but not its function during reactivation correlates with expression of two small non-coding RNAs, sncRNA1&2

Jay J. Oh, Ujjaldeep Jaggi, Kati Tormanen, Shaohui Wang, Satoshi Hirose, Homayon Ghiasi

Research Article | published 10 Jun 2024 PLOS Pathogens

https://doi.org/10.1371/journal.ppat.1012307

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Protective role of RIPK1 scaffolding against HDV-induced hepatocyte cell death and the significance of cytokines in mice

Gracián Camps, Sheila Maestro, Laura Torella, Diego Herrero, Carla Usai, Martin Bilbao-Arribas, Ana Aldaz, Cristina Olagüe, Africa Vales, Lester Suárez-Amarán, Rafael Aldabe, Gloria Gonzalez-Aseguinolaza

Research Article | published 13 May 2024 PLOS Pathogens

https://doi.org/10.1371/journal.ppat.1011749

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Analysis of intestinal epithelial cell responses to Cryptosporidium highlights the temporal effects of IFN-γ on parasite restriction

Ryan D. Pardy, Katelyn A. Walzer, Bethan A. Wallbank, Jessica H. Byerly, Keenan M. O’Dea, Ian S. Cohn, Breanne E. Haskins, Justin L. Roncaioli, Eleanor J. Smith, Gracyn Y. Buenconsejo, Boris Striepen, Christopher A. Hunter

Research Article | published 08 May 2024 PLOS Pathogens

https://doi.org/10.1371/journal.ppat.1011820

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Hepatitis B virus e antigen induces atypical metabolism and differentially regulates programmed cell deaths of macrophages

Yumei Li, Christine Wu, Jiyoung Lee, Qiqi Ning, Juhyeon Lim, Hyungjin Eoh, Sean Wang, Benjamin P. Hurrell, Omid Akbari, Jing-hsiung James Ou

Research Article | published 11 Mar 2024 PLOS Pathogens

https://doi.org/10.1371/journal.ppat.1012079

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Flavivirus genome recoding by codon optimisation confers genetically stable in vivo attenuation in both mice and mosquitoes

Wei-Xin Chin, Hao Yuin Kong, Isabelle Xin Yu Zhu, Zi Yun Teo, Regina Faruk, Regina Ching Hua Lee, Si Xian Ho, Zhen Qin Aw, Bowen Yi, Xin Jun Hou, Antson Kiat Yee Tan, Thinesshwary Yogarajah, Roland G. Huber, Yu Cai, Yue Wan, Justin Jang Hann Chu

Research Article | published 26 Oct 2023 PLOS Pathogens

https://doi.org/10.1371/journal.ppat.1011753

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Tools and techniques to identify, study, and control Candida auris

James Carty, Anuradha Chowdhary, Douglas Bernstein, Shankar Thangamani

Pearls | published 19 Oct 2023 PLOS Pathogens

https://doi.org/10.1371/journal.ppat.1011698

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An intact S-layer is advantageous to Clostridioides difficile within the host

Michael J. Ormsby, Filipa Vaz, Joseph A. Kirk, Anna Barwinska-Sendra, Jennifer C. Hallam, Paola Lanzoni-Mangutchi, John Cole, Roy R. Chaudhuri, Paula S. Salgado, Robert P. Fagan, Gillian R Douce

Research Article | published 29 Jun 2023 PLOS Pathogens

https://doi.org/10.1371/journal.ppat.1011015

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