Search Results | PLOS One

Comparative analyses of chloroplast genomes of Theobroma cacao from northern Peru

Daniel Tineo, Danilo E. Bustamante, Martha S. Calderon, Manuel Oliva

Research Article | published 05 Mar 2025 PLOS ONE

https://doi.org/10.1371/journal.pone.0316148

Views: 748 • Citations: 0 • Saves: 0 • Shares: 0

Hosta clausa (Asparagaceae) in East Asia: Intraspecific chloroplast genome variation and its phylogenomic implications

JiYoung Yang, Seung-Chul Kim

Research Article | published 19 Feb 2025 PLOS ONE

https://doi.org/10.1371/journal.pone.0317884

Views: 310 • Citations: 0 • Saves: 0 • Shares: 0

DArTseq-based silicoDArT and SNP markers reveal the genetic diversity and population structure of Kenyan cashew (Anacardium occidentale L.) landraces

Dennis Wamalabe Mukhebi, Pauline Wambui Gachanja, Diana Jepkoech Karan, Brenda Muthoni Kamau, Pauline Wangeci King’ori, Bicko Steve Juma, Wilton Mwema Mbinda

Research Article | published 31 Jan 2025 PLOS ONE

https://doi.org/10.1371/journal.pone.0313850

Views: 405 • Citations: 0 • Saves: 0 • Shares: 0

Comparative genomics of Fusarium species causing Fusarium ear rot of maize

Owen Hudson, Colton D. Meinecke, Jeremy T. Brawner

Research Article | published 18 Oct 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0306144

Views: 736 • Citations: 1 • Saves: 0 • Shares: 0

Musa species in mainland Southeast Asia: From wild to domesticate

Christophe Jenny, Gabriel Sachter-Smith, Catherine Breton, Ronan Rivallan, Jean-Pierre Jacquemoud-Collet, Cécile Dubois, Matthieu Chabannes, Ngọc-Sâm Lý, Thomas Haevermans, Tiến-Dũng Triệu, Oudomphone Insisiengmay, Ting Zhang, Marie-Line Caruana, Julie Sardos, Xavier Perrier

Research Article | published 02 Oct 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0307592

Views: 2334 • Citations: 1 • Saves: 17 • Shares: 10

Complete chloroplast genome of a montane plant Spathoglottis aurea Lindl.: Comparative analyses and phylogenetic relationships among members of tribe collabieae

Nurul Shakina Mohd Talkah, Jasim Haider Mahmod Jasim, Farah Alia Nordin, Ahmad Sofiman Othman

Research Article | published 16 Sep 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0291888

Views: 514 • Citations: 0 • Saves: 0 • Shares: 0

Comparative analysis of the complete chloroplast genomes of thirteen Bougainvillea cultivars from South China with implications for their genome structures and phylogenetic relationships

Xiao-Ye Wu, He-Fa Wang, Shui-Ping Zou, Lan Wang, Gen-Fa Zhu, Dong-Mei Li

Research Article | published 11 Sep 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0310091

Views: 796 • Citations: 0 • Saves: 0 • Shares: 0

Comparison of machine learning methods for genomic prediction of selected Arabidopsis thaliana traits

Ciaran Michael Kelly, Russell Lewis McLaughlin

Research Article | published 28 Aug 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0308962

Views: 882 • Citations: 0 • Saves: 3 • Shares: 0

Whole genome-based reclassification of several species of the genus Microbispora

Noureddine Bouras, Ricardo A. R. Machado

Research Article | published 22 Aug 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0307299

Views: 805 • Citations: 2 • Saves: 0 • Shares: 0

Comparative transcriptomics of Venus flytrap (Dionaea muscipula) across stages of prey capture and digestion

Jeremy D. Rentsch, Summer Rose Blanco, James H. Leebens-Mack

Research Article | published 12 Aug 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0305117

Views: 1021 • Citations: 0 • Saves: 0 • Shares: 0

AmiR-P³: An AI-based microRNA prediction pipeline in plants

Sobhan Ataei, Jafar Ahmadi, Sayed-Amir Marashi, Ilia Abolhasani

Research Article | published 01 Aug 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0308016

Views: 966 • Citations: 1 • Saves: 3 • Shares: 4

Reclassification of Botryococcus braunii chemical races into separate species based on a comparative genomics analysis

Devon J. Boland, Ivette Cornejo-Corona, Daniel R. Browne, Rebecca L. Murphy, John Mullet, Shigeru Okada, Timothy P. Devarenne

Research Article | published 29 Jul 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0304144

Views: 1477 • Citations: 2 • Saves: 11 • Shares: 2

Genome-wide identification and expression analysis of TPP gene family under salt stress in peanut (Arachis hypogaea L.)

Yanfeng Zhang, Minxuan Cao, Qiuzhi Li, Fagang Yu

Research Article | published 18 Jul 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0305730

Views: 783 • Citations: 0 • Saves: 0 • Shares: 0

Puzzle Hi-C: An accurate scaffolding software

Guoliang Lin, Zhiru Huang, Tingsong Yue, Jing Chai, Yan Li, Huimin Yang, Wanting Qin, Guobing Yang, Robert W. Murphy, Ya-ping Zhang, Zijie Zhang, Wei Zhou, Jing Luo

Research Article | published 15 Jul 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0298564

Views: 718 • Citations: 0 • Saves: 0 • Shares: 0

Phased chromosome-scale genome assembly of an asexual, allopolyploid root-knot nematode reveals complex subgenomic structure

Michael R. Winter, Adam P. Taranto, Henok Zemene Yimer, Alison Coomer Blundell, Shahid Siddique, Valerie M. Williamson, David H. Lunt

Research Article | published 06 Jun 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0302506

Views: 1072 • Citations: 1 • Saves: 6 • Shares: 6

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