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Multiple alignment calculation  
PLOS One  
Identification of a potential interspecies reassortant rotavirus G and avastrovirus 2 co-infection from black-headed gull (Chroicocephalus ridibundus) in Hungary

Péter Pankovics, Károly Takáts, Péter Urbán, Róbert Mátics, Gábor Reuter, Ákos Boros

Research Article | published 24 Mar 2025 PLOS ONE

https://doi.org/10.1371/journal.pone.0317400

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WDR75: An essential protein for ribosome assembly undergoing purifying selection

Lauren Lee, Justen B. Whittall

Research Article | published 11 Feb 2025 PLOS ONE

https://doi.org/10.1371/journal.pone.0318395

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Bioinformatics analysis of myelin-microbe interactions suggests multiple types of molecular mimicry in the pathogenesis of multiple sclerosis

Ali Bigdeli, Mostafa Ghaderi-Zefrehei, Bluma J. Lesch, Mehrdad Behmanesh, S. Shahriar Arab

Research Article | published 30 Dec 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0308817

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Engineered red Opto-mGluR6 Opsins, a red-shifted optogenetic excitation tool, an in vitro study

Hoda Shamsnajafabadi, Zahra-Soheila Soheili, Mehdi Sadeghi, Shahram Samiee, Pouria Ghasemi, Mohammad Ismail Zibaii, Hamid Gholami Pourbadie, Hamid Ahmadieh, Ehsan Ranaei Pirmardan, Najmeh Salehi, Dorsa Samiee, Ali Kashanian

Research Article | published 24 Oct 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0311102

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Analysis of a new negevirus-like sequence from Bemisia tabaci unveils a potential new taxon linking nelorpi- and centiviruses

Diego F. Quito-Avila, Edison Reyes-Proaño, Gerardo Armijos-Capa, Ricardo I. Alcalá Briseño, Robert Alvarez, Francisco F. Flores

Research Article | published 16 May 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0303838

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Mottle: Accurate pairwise substitution distance at high divergence through the exploitation of short-read mappers and gradient descent

Alisa Prusokiene, Neil Boonham, Adrian Fox, Thomas P. Howard

Research Article | published 21 Mar 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0298834

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SVvalidation: A long-read-based validation method for genomic structural variation

Yan Zheng, Xuequn Shang

Research Article | published 05 Jan 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0291741

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SAKE: Strobemer-assisted k-mer extraction

Miika Leinonen, Leena Salmela

Research Article | published 29 Nov 2023 PLOS ONE

https://doi.org/10.1371/journal.pone.0294415

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AlignStatPlot: An R package and online tool for robust sequence alignment statistics and innovative visualization of big data

Alsamman M. Alsamman, Achraf El Allali, Morad M. Mokhtar, Khaled Al-Sham’aa, Ahmed E. Nassar, Khaled H. Mousa, Zakaria Kehel

Research Article | published 20 Sep 2023 PLOS ONE

https://doi.org/10.1371/journal.pone.0291204

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The difficulty of aligning intrinsically disordered protein sequences as assessed by conservation and phylogeny

Andrew C. Riley, Daniel A. Ashlock, Steffen P. Graether

Research Article | published 13 Jul 2023 PLOS ONE

https://doi.org/10.1371/journal.pone.0288388

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On closing the inopportune gap with consistency transformation and iterative refinement

Mario João Jr., Alexandre C. Sena, Vinod E. F. Rebello

Research Article | published 13 Jul 2023 PLOS ONE

https://doi.org/10.1371/journal.pone.0287483

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Mirage2’s high-quality spliced protein-to-genome mappings produce accurate multiple-sequence alignments of isoforms

Alexander J. Nord, Travis J. Wheeler

Research Article | published 08 May 2023 PLOS ONE

https://doi.org/10.1371/journal.pone.0285225

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Telomerase RNA plays a major role in the completion of the life cycle in Ustilago maydis and shares conserved domains with other Ustilaginales

Juan Antonio Sanpedro-Luna, José Juan Jacinto-Vázquez, Estela Anastacio-Marcelino, Carmen María Posadas-Gutiérrez, Iván Olmos-Pineda, Jesús Antonio González-Bernal, Moisés Carcaño-Montiel, Leticia Vega-Alvarado, Candelario Vázquez-Cruz, Patricia Sánchez-Alonso

Research Article | published 23 Mar 2023 PLOS ONE

https://doi.org/10.1371/journal.pone.0281251

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Ancient multiplicity in cyclic nucleotide-gated (CNG) cation channel repertoire was reduced in the ancestor of Olfactores before re-expansion by whole genome duplications in vertebrates

David Lagman, Helen J. Haines, Xesús M. Abalo, Dan Larhammar

Research Article | published 30 Dec 2022 PLOS ONE

https://doi.org/10.1371/journal.pone.0279548

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Genomic analysis of SARS-CoV-2 variants of concern circulating in Hawai’i to facilitate public-health policies

David P. Maison, Sean B. Cleveland, Vivek R. Nerurkar

Research Article | published 01 Dec 2022 PLOS ONE

https://doi.org/10.1371/journal.pone.0278287

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