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Human genomics  
PLOS One  
Detection of hepatitis B virus mRNA from single cell RNA sequencing data without prior knowledge

Nicolaas Van Renne, Thomas Vanwolleghem

Research Article | published 11 Feb 2025 PLOS ONE

https://doi.org/10.1371/journal.pone.0314060

Views: 324Citations: 0Saves: 1 • Shares: 2

Comparisons of performances of structural variants detection algorithms in solitary or combination strategy

De-Min Duan, Chinyi Cheng, Yu-Shu Huang, An-ko Chung, Pin-Xuan Chen, Yu-An Chen, Jacob Shujui Hsu, Pei-Lung Chen

Research Article | published 06 Feb 2025 PLOS ONE

https://doi.org/10.1371/journal.pone.0314982

Views: 458Citations: 0Saves: 0 • Shares: 1

A genomics learning framework for undergraduates

Laura K. Reed, Adam J. Kleinschmit, Vincent Buonaccorsi, Arthur G. Hunt, Douglas Chalker, Jason Williams, Christopher J. Jones, Juan-Carlos Martinez-Cruzado, Anne Rosenwald

Research Article | published 09 Jan 2025 PLOS ONE

https://doi.org/10.1371/journal.pone.0313124

Views: 4004Citations: 0Saves: 1 • Shares: 90

Hypermethylation at 45S rDNA promoter in cancers

Trang Thi Quynh Tran, Trang Hien Do, Tung The Pham, Phương Thi Thu Luu, Oanh Minh Pham, Uyen Quynh Nguyen, Linh Dieu Vuong, Quang Ngoc Nguyen, Tuan Van Mai, Son Van Ho, Than Thi Nguyen, Lan Thi Thuong Vo

Research Article | published 07 Jan 2025 PLOS ONE

https://doi.org/10.1371/journal.pone.0311085

Views: 419Citations: 0Saves: 0 • Shares: 0

An appropriate DNA input for bisulfite conversion reveals LINE-1 and Alu hypermethylation in tissues and circulating cell-free DNA from cancers

Trang Thi Quynh Tran, Tung The Pham, Than Thi Nguyen, Trang Hien Do, Phuong Thi Thu Luu, Uyen Quynh Nguyen, Linh Dieu Vuong, Quang Ngoc Nguyen, Son Van Ho, Hang Viet Dao, Tong Van Hoang, Lan Thi Thuong Vo

Research Article | published 30 Dec 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0316394

Views: 625Citations: 0Saves: 0 • Shares: 0

Comparative analysis of whole exome sequencing kits for the canine genome

Jinhee Jang, Yong-Jik Lee, Soohyun Ko, A. M. Abd El-Aty, Ibrahim Gecili, Ji Hoon Jeong, ChangHyuk Kwon, Tae Woo Jung

Research Article | published 04 Nov 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0312203

Views: 532Citations: 0Saves: 0 • Shares: 0

Nearby and non-nested genes in the human genome have more similar genotype tissue expression

Jiahong Dong, Stephen Brown, Kevin Truong

Research Article | published 18 Sep 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0307360

Views: 573Citations: 0Saves: 0 • Shares: 0

Puzzle Hi-C: An accurate scaffolding software

Guoliang Lin, Zhiru Huang, Tingsong Yue, Jing Chai, Yan Li, Huimin Yang, Wanting Qin, Guobing Yang, Robert W. Murphy, Ya-ping Zhang, Zijie Zhang, Wei Zhou, Jing Luo

Research Article | published 15 Jul 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0298564

Views: 717Citations: 0Saves: 0 • Shares: 0

Acute strength exercise training impacts differently the HERV-W expression and inflammatory biomarkers in resistance exercise training individuals

Lucas Vinicius Morais, Samuel Nascimento dos Santos, Tabatah Hellen Gomes, Camila Malta Romano, Patricia Colombo-Souza, Jonatas Bussador Amaral, Marina Tiemi Shio, Lucas Melo Neves, André Luis Lacerda Bachi, Carolina Nunes França, Luiz Henrique da Silva Nali

Research Article | published 16 May 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0303798

Views: 811Citations: 0Saves: 18 • Shares: 2

Relationships between genomic dissipation and de novo SNP evolution

Zackery E. Plyler, Christopher W. McAtee, Aubrey E. Hill, Michael R. Crowley, Janice M. Tindall, Samuel R. Tindall, Disha Joshi, Eric J. Sorscher

Research Article | published 16 May 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0303257

Views: 538Citations: 1Saves: 0 • Shares: 0

Leveraging genomic signatures of oral microbiome-associated antibiotic resistance genes for diagnosing pancreatic cancer

Xiaojing Shen, Xiaolin Zhu, Hairong Liu, Rongtao Yuan, Qingyuan Guo, Peng Zhao

Research Article | published 30 Apr 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0302361

Views: 683Citations: 0Saves: 3 • Shares: 0

A hepatitis B virus (HBV) sequence variation graph improves alignment and sample-specific consensus sequence construction

Dylan Duchen, Steven J. Clipman, Candelaria Vergara, Chloe L. Thio, David L. Thomas, Priya Duggal, Genevieve L. Wojcik

Research Article | published 26 Apr 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0301069

Views: 796Citations: 1Saves: 5 • Shares: 1

A comparison of software for analysis of rare and common short tandem repeat (STR) variation using human genome sequences from clinical and population-based samples

John W. Oketch, Louise V. Wain, Edward J. Hollox

Research Article | published 01 Apr 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0300545

Views: 1265Citations: 4Saves: 17 • Shares: 5

CRISPR-Cas9-guided amplification-free genomic diagnosis for familial hypercholesterolemia using nanopore sequencing

Sijia Xu, Hiroki Shiomi, Yugo Yamashita, Satoshi Koyama, Takahiro Horie, Osamu Baba, Masahiro Kimura, Yasuhiro Nakashima, Naoya Sowa, Koji Hasegawa, Ayako Suzuki, Yutaka Suzuki, Takeshi Kimura, Koh Ono

Research Article | published 20 Mar 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0297231

Views: 1786Citations: 4Saves: 1 • Shares: 2

HaplotagLR: An efficient and configurable utility for haplotagging long reads

Monica J. Holmes, Babak Mahjour, Christopher P. Castro, Gregory A. Farnum, Adam G. Diehl, Alan P. Boyle

Research Article | published 13 Mar 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0298688

Views: 836Citations: 1Saves: 0 • Shares: 0

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