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DNA structure  
PLOS One  
Deciphering the structural consequences of R83 and R152 methylation on DNA polymerase β using molecular modeling

Amit Srivastava, Haitham Idriss, Gobind Das, Sufian Abedrabbo, Mohd Sahir Shamsir, Dirar Homouz

Research Article | published 12 Mar 2025 PLOS ONE

https://doi.org/10.1371/journal.pone.0318614

Views: 253Citations: 0Saves: 0 • Shares: 0

Identification of critical amino acids in the DNA binding domain of LuxO: Lessons from a constitutive active LuxO

Shradha Surin, Richa Singh, Manpreet Kaur, Gourab Basu Choudhury, Himanshu Sen, Chetna Dureja, Saumen Datta, Saumya Raychaudhuri

Research Article | published 17 Sep 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0310444

Views: 762Citations: 0Saves: 1 • Shares: 1

A label-free G-quadruplex aptamer/gold nanoparticle-based colorimetric biosensor for rapid detection of bovine viral diarrhea virus genotype 1

Parisa Rabiei, Hassan Mohabatkar, Mandana Behbahani

Research Article | published 30 Jul 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0293561

Views: 884Citations: 2Saves: 0 • Shares: 0

Several supplementary concepts for applied category-theoretical states over an extended Petri net using an example relating to genetic coding: Toward an abstract algebraic formulation of molecular/genetic biology

Jitsuki Sawamura, Shigeru Morishita, Jun Ishigooka

Research Article | published 07 Jun 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0302710

Views: 1714Citations: 0Saves: 0 • Shares: 0

Formamide denaturation of double-stranded DNA for fluorescence in situ hybridization (FISH) distorts nanoscale chromatin structure

Anne R. Shim, Jane Frederick, Emily M. Pujadas, Tiffany Kuo, I. Chae Ye, Joshua A. Pritchard, Cody L. Dunton, Paola Carrillo Gonzalez, Nicolas Acosta, Surbhi Jain, Nicholas M. Anthony, Luay M. Almassalha, Igal Szleifer, Vadim Backman

Research Article | published 28 May 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0301000

Views: 2938Citations: 5Saves: 7 • Shares: 3

Building an ab initio solvated DNA model using Euclidean neural networks

Alex J. Lee, Joshua A. Rackers, Shivesh Pathak, William P. Bricker

Research Article | published 15 Feb 2024 PLOS ONE

https://doi.org/10.1371/journal.pone.0297502

Views: 735Citations: 1Saves: 0 • Shares: 0

The evolutionary loss of the Eh1 motif in FoxE1 in the lineage of placental mammals

Mahak Sharma, Victoria M. Larow, Nataliia Dobychina, Daniel S. Kessler, Maria M. Krasilnikova, Sergey Yaklichkin

Research Article | published 27 Dec 2023 PLOS ONE

https://doi.org/10.1371/journal.pone.0296176

Views: 785Citations: 0Saves: 1 • Shares: 3

DNAJB3 attenuates ER stress through direct interaction with AKT

Zeyaul Islam, Abdoulaye Diane, Namat Khattab, Mohammed Dehbi, Paul Thornalley, Prasanna R. Kolatkar

Research Article | published 18 Aug 2023 PLOS ONE

https://doi.org/10.1371/journal.pone.0290340

Views: 966Citations: 2Saves: 11 • Shares: 0

Multidimensional scaling methods can reconstruct genomic DNA loops using Hi-C data properties

Ryo Ishibashi

Research Article | published 17 Aug 2023 PLOS ONE

https://doi.org/10.1371/journal.pone.0289651

Views: 1117Citations: 0Saves: 1 • Shares: 8

Gradient-mixing LEGO robots for purifying DNA origami nanostructures of multiple components by rate-zonal centrifugation

Jason Sentosa, Franky Djutanta, Brian Horne, Dominic Showkeir, Robert Rezvani, Chloe Leff, Swechchha Pradhan, Rizal F. Hariadi

Research Article | published 19 Jul 2023 PLOS ONE

https://doi.org/10.1371/journal.pone.0283134

Views: 2693Citations: 1Saves: 10 • Shares: 7

Biochemical properties of naturally occurring human bloom helicase variants

Rachel R. Cueny, Sameer Varma, Kristina H. Schmidt, James L. Keck

Research Article | published 02 Jun 2023 PLOS ONE

https://doi.org/10.1371/journal.pone.0281524

Views: 1182Citations: 1Saves: 21 • Shares: 12

Understanding the self-assembly dynamics of A/T absent ‘four-way DNA junctions with sticky ends’ at altered physiological conditions through molecular dynamics simulations

Akanksha Singh, Ramesh Kumar Yadav, Ali Shati, Nitin Kumar Kamboj, Hesham Hasssan, Shiv Bharadwaj, Rashmi Rana, Umesh Yadava

Research Article | published 08 Feb 2023 PLOS ONE

https://doi.org/10.1371/journal.pone.0278755

Views: 1214Citations: 1Saves: 1 • Shares: 1

TBProfiler for automated calling of the association with drug resistance of variants in Mycobacterium tuberculosis

Lennert Verboven, Jody Phelan, Tim H. Heupink, Annelies Van Rie

Research Article | published 30 Dec 2022 PLOS ONE

https://doi.org/10.1371/journal.pone.0279644

Views: 1964Citations: 27Saves: 30 • Shares: 6

Anomalies in dye-terminator DNA sequencing caused by a natural G-quadruplex

George S. Brush

Research Article | published 27 Dec 2022 PLOS ONE

https://doi.org/10.1371/journal.pone.0279423

Views: 830Citations: 0Saves: 1 • Shares: 1

GW-2974 and SCH-442416 modulators of tyrosine kinase and adenosine receptors can also stabilize human telomeric G-quadruplex DNA

Alaa A. Salem, Ismail A. El Haty, Mohammad A. Ghattas

Research Article | published 07 Dec 2022 PLOS ONE

https://doi.org/10.1371/journal.pone.0277963

Views: 849Citations: 2Saves: 5 • Shares: 2

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