Peer Review History
Original SubmissionNovember 12, 2020 |
---|
Dear Mr Brummaier, Thank you very much for submitting your manuscript "Burden of soil-transmitted helminth infection in pregnant refugees and migrants on the Thailand-Myanmar border: results from a retrospective cohort" for consideration at PLOS Neglected Tropical Diseases. As with all papers reviewed by the journal, your manuscript was reviewed by members of the editorial board and by several independent reviewers. In light of the reviews (below this email), we would like to invite the resubmission of a significantly-revised version that takes into account the reviewers' comments. We cannot make any decision about publication until we have seen the revised manuscript and your response to the reviewers' comments. Your revised manuscript is also likely to be sent to reviewers for further evaluation. When you are ready to resubmit, please upload the following: [1] A letter containing a detailed list of your responses to the review comments and a description of the changes you have made in the manuscript. Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. [2] Two versions of the revised manuscript: one with either highlights or tracked changes denoting where the text has been changed; the other a clean version (uploaded as the manuscript file). Important additional instructions are given below your reviewer comments. Please prepare and submit your revised manuscript within 60 days. If you anticipate any delay, please let us know the expected resubmission date by replying to this email. Please note that revised manuscripts received after the 60-day due date may require evaluation and peer review similar to newly submitted manuscripts. Thank you again for your submission. We hope that our editorial process has been constructive so far, and we welcome your feedback at any time. Please don't hesitate to contact us if you have any questions or comments. Sincerely, Keke Fairfax, PhD Deputy Editor PLOS Neglected Tropical Diseases Keke Fairfax Deputy Editor PLOS Neglected Tropical Diseases *********************** Reviewer's Responses to Questions Key Review Criteria Required for Acceptance? As you describe the new analyses required for acceptance, please consider the following: Methods -Are the objectives of the study clearly articulated with a clear testable hypothesis stated? -Is the study design appropriate to address the stated objectives? -Is the population clearly described and appropriate for the hypothesis being tested? -Is the sample size sufficient to ensure adequate power to address the hypothesis being tested? -Were correct statistical analysis used to support conclusions? -Are there concerns about ethical or regulatory requirements being met? Reviewer #1: see general comments Reviewer #2: Given the primary objectives of the study, it was expected that the evidence would be used to inform health policy and practice in the two study populations of migrants and refugees in terms of timing and frequency of antenatal care and public health interventions like deworming and iron supplementation. Given also the significant difference in the occurrence of STH infection in the two study populations, an appreciation of what is currently being provided in terms of antenatal care in the respective settings would be warranted and, if necessary, appropriate population-specific remedial action proposed. An analysis of relevant outcomes, again in the two populations separately, would seem the most beneficial in terms of subsequent health interventions that should be considered by health authorities. Therefore all analyses should, as a minimum, be disaggregated by population. The rationale for undertaking exploratory analyses is missing. For example, an examination of the association between STH and anemia is not informative, as this association is well known and one would design a different study to examine such an association anyway (e.g. STH diagnosis would be based on a different test). The rationale for all exploratory analyses therefore should be clarified or the analyses should be removed. Retrospective data can certainly be used to explore the study’s primary objectives. But there are limitations to this type of data. Selection bias is one such limitation. Selection bias here can occur from missing important numbers of pregnant women in the database, or limiting the numbers of women in certain analyses because of incomplete data. To give one example, as ANC was known to only be fully operational at the end of 2013 in the study populations until the end of 2016, why were data to be analyzed not restricted to the three full years of 2014, 2015 and 2016? It should be kept in mind that the ‘prevalence’ reported in this study is a 54-month cumulative prevalence. It would be helpful to annualize this figure. It might then be clarified whether STH is, or is not, of public health importance in these populations and that relevant health policy and practice should be reviewed. Also, as migrant and refugee populations were found to be significantly different in terms of STH infection (despite the measurement error), all analyses should be performed for each of these study populations separately. The question of trimester is always problematic. WHO defines the first 16 weeks of pregnancy as the first trimester, so why was 14 weeks used in this study (line 200)? (WHO. Integrated Management of Pregnancy and Childbirth. Pregnancy, Childbirth, Postpartum and Newborn Care: A guide for Essential Practice. WHO, 2015; see page 180.) At a minimum, the data need to re-analyzed with the WHO definition of trimester. The definition of trimester is important as this will affect the estimate of the number of miscarriages (line 200). All instances referring to trimester in the text and tables require revision. The measurement of the STH infection itself is problematic and subject to measurement error. WHO recommends that the Kato-Katz method be used to assess the prevalence and intensity of STH infection in order to then implement a preventive chemotherapy program in endemic areas. As a non-standardized diagnostic test was used in this study, with unknown estimates of species-specific sensitivity and specificity, it is difficult to interpret the results. Therefore, the accuracy of the estimates of prevalence and intensity for monoinfections, or the prevalence of multiple species infections, is unknown, and any analysis using these figures is subject to measurement error. This is one of the reasons for dropping the exploratory analyses. It is unclear why the 6.3% due to multiple stool testing from the same individuals was not removed from all analyses…They bias the results if they are not removed. Reviewer #3: The study population, objectives, design and ethics are well described and appropriate statistical analyses are employed to support their conclusions. -------------------- Results -Does the analysis presented match the analysis plan? -Are the results clearly and completely presented? -Are the figures (Tables, Images) of sufficient quality for clarity? Reviewer #1: see general comments Reviewer #2: All results tables, figures and supplementary material need to be reconsidered given the above comments. Reviewer #3: Results are clearly presented in line with the study objectives. However, I identified a few issues below, these need to be addressed 1. A couple of numbers in the text do not match what is indicated in the tables, let the authors be consistent with this. 2. Lines 256 – 258: STH infections were detected earlier… The numbers on line 257 e.g. 14+2(9+0 – 22+4) do not match the numbers in Table 1 3. Table S2: what is the motivation for showing STH neg while for the other mono infections it shows positivity? Wouldn’t it be better if all infections showed the same thing (either positivity or negativity)? 4. Lines 269 – 281: The denominators are 4041 and 8701 for refugee and migrant populations respectively. This contradicts the figures in Table 1 i.e. 3909 and 8517 respectively. Please ensure that this is well explained. 5. Line 289: In an adjusted logistic regression model… I think that the potential confounders adjusted for need to be mentioned, perhaps in the methods section. 6. Lines 293 – 294: would you consider a trend test to confirm the result that the intensity of infection was associated with anaemia? 7. Lines 307 – 309: in an unadjusted analysis… you have reported adjusted analyses before, why not for this result also? 8. Please make Figure 3 clearer, it looks fuzzy at the moment 9. Lines 315 – 316: when adjusting for confounders, … please mention these confounders in the methods section. I know they appear in supplementary information but it might be better to include them in the main text. -------------------- Conclusions -Are the conclusions supported by the data presented? -Are the limitations of analysis clearly described? -Do the authors discuss how these data can be helpful to advance our understanding of the topic under study? -Is public health relevance addressed? Reviewer #1: see general comments Reviewer #2: The discussion also then should be focussed on the primary objectives to inform public health interventions to the two study populations. There is considerable repetition of results in the discussion which can be removed. All mention of benzimidazole efficacy should be removed as this was not adequately investigated in this study. Reviewer #3: Conclusions are supported by the data and limitations are largely well described, save for the statistical power for association analyses. Public health relevance is addressed, though I think a bit more of this needs to appear in the abstract! -------------------- Editorial and Data Presentation Modifications? Use this section for editorial suggestions as well as relatively minor modifications of existing data that would enhance clarity. If the only modifications needed are minor and/or editorial, you may wish to recommend “Minor Revision” or “Accept”. Reviewer #1: see general comments Reviewer #2: (No Response) Reviewer #3: (No Response) -------------------- Summary and General Comments Use this section to provide overall comments, discuss strengths/weaknesses of the study, novelty, significance, general execution and scholarship. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. If requesting major revision, please articulate the new experiments that are needed. Reviewer #1: Burden of soil-transmitted helminth infection in pregnant refugees and migrants on the Thailand-Myanmar border: results from a retrospective cohort. By Brummaier et al General comment The article is well written and the experiment is well conducted but in my opinion this paper has an important drawback: The authors do not recognize that the women population selected presents low level of STH infection (around 20%) principally due to A lumbricoides and therefore their experiment had no possibility to show any morbidity caused by the parasites. A population with so low STH prevalence of hookworm (1%-6%) and T. trichiura (2.4%) do not qualify for preventive chemotherapy according the WHO recommendations (please refers to WHO guidelines 2017:“ Preventive chemotherapy, using single-dose albendazole (400 mg) or mebendazole (500 mg), is recommended as a public health intervention for pregnant women, after the first trimester living in areas where both: (i) the baseline prevalence of hookworm and/or T. trichiura infection is 20% or higher among pregnant women, and (ii) anaemia is a severe public health problem, with a prevalence of 40% or higher among pregnant women.”) The reason why PC is not recommended in populations of women where the prevalence of Hookworm and T. trichiura is lower than 20% is because at this level of prevalence the only infections present are the ones of light intensity that are not expected to cause morbidity. I think that an experiment conducted in this population with so low pevalence had no possibility to demonstrate any morbidity caused by the parasites and therefore is probably unnecessary. However, there is a specific reason why suggest to reject this article despite the fact that I considered well written and resulting from a well conducted experiment: Unfortunately, researchers that conduct systematic review are frequently not experienced on the specific disease but only on the methodology for conducting the review; as consequence, especially in the area of deworming, when the results of studies similar to the ones I am reviewing here (no possibility to demonstrate an effect because of the low prevalence) are summarized with the ones conducted in population where the level of parasites warrant intervention, they produce serious distortion of the results of the systematic review and therefore are leading to inapropriate conclusion. This is why I consider this kind of articles not only unnecessary but counterproductive and therefore I reccomend rejection. Reviewer #2: This manuscript details a retrospective review of cumulative data (recorded between 2013 and 2017) from screening for STH infection among migrant and refugee pregnant women living in camps along the Thai-Myanmar border. It is actually unclear why the study’s objective was to describe and compare STH infection between these two study populations. Describe yes, but why compare? Would results influence screening procedures or deworming policy/practice? If this was the intent, it needs to be made clearer. Reviewer #3: This is a very well-written paper about the burden of STH infection in a pregnant population living on the Thailand-Myanmar border. Authors compare the prevalence of different STH species between a migrant population and a population of refugees in a camp, they also report an exploratory analysis on associations between STH infection, maternal health and pregnancy outcomes. I think though, that the authors need to acknowledge the limitation of lack of statistical power for the exploratory association analyses or else confirm that this is not a problem. -------------------- PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Reviewer #3: Yes: Lawrence Lubyayi Figure Files: While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Data Requirements: Please note that, as a condition of publication, PLOS' data policy requires that you make available all data used to draw the conclusions outlined in your manuscript. Data must be deposited in an appropriate repository, included within the body of the manuscript, or uploaded as supporting information. This includes all numerical values that were used to generate graphs, histograms etc.. For an example see here: http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001908#s5. Reproducibility: To enhance the reproducibility of your results, PLOS recommends that you deposit laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see https://journals.plos.org/plosntds/s/submission-guidelines#loc-methods |
Revision 1 |
Dear Mr Brummaier, We are pleased to inform you that your manuscript 'Burden of soil-transmitted helminth infection in pregnant refugees and migrants on the Thailand-Myanmar border: results from a retrospective cohort' has been provisionally accepted for publication in PLOS Neglected Tropical Diseases. Before your manuscript can be formally accepted you will need to complete some formatting changes, which you will receive in a follow up email. A member of our team will be in touch with a set of requests. Please note that your manuscript will not be scheduled for publication until you have made the required changes, so a swift response is appreciated. IMPORTANT: The editorial review process is now complete. PLOS will only permit corrections to spelling, formatting or significant scientific errors from this point onwards. Requests for major changes, or any which affect the scientific understanding of your work, will cause delays to the publication date of your manuscript. Should you, your institution's press office or the journal office choose to press release your paper, you will automatically be opted out of early publication. We ask that you notify us now if you or your institution is planning to press release the article. All press must be co-ordinated with PLOS. Thank you again for supporting Open Access publishing; we are looking forward to publishing your work in PLOS Neglected Tropical Diseases. Best regards, Keke C Fairfax, PhD Deputy Editor PLOS Neglected Tropical Diseases Keke Fairfax Deputy Editor PLOS Neglected Tropical Diseases *********************************************************** |
Formally Accepted |
Dear Mr Brummaier, We are delighted to inform you that your manuscript, "Burden of soil-transmitted helminth infection in pregnant refugees and migrants on the Thailand-Myanmar border: results from a retrospective cohort," has been formally accepted for publication in PLOS Neglected Tropical Diseases. We have now passed your article onto the PLOS Production Department who will complete the rest of the publication process. All authors will receive a confirmation email upon publication. The corresponding author will soon be receiving a typeset proof for review, to ensure errors have not been introduced during production. Please review the PDF proof of your manuscript carefully, as this is the last chance to correct any scientific or type-setting errors. Please note that major changes, or those which affect the scientific understanding of the work, will likely cause delays to the publication date of your manuscript. Note: Proofs for Front Matter articles (Editorial, Viewpoint, Symposium, Review, etc...) are generated on a different schedule and may not be made available as quickly. Soon after your final files are uploaded, the early version of your manuscript will be published online unless you opted out of this process. The date of the early version will be your article's publication date. The final article will be published to the same URL, and all versions of the paper will be accessible to readers. Thank you again for supporting open-access publishing; we are looking forward to publishing your work in PLOS Neglected Tropical Diseases. Best regards, Shaden Kamhawi co-Editor-in-Chief PLOS Neglected Tropical Diseases Paul Brindley co-Editor-in-Chief PLOS Neglected Tropical Diseases |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .