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Short-range template switching in great ape genomes explored using pair hidden Markov models

Conor R. Walker, Aylwyn Scally, Nicola De Maio, Nick Goldman

Research Article | published 02 Mar 2021 PLOS Genetics

https://doi.org/10.1371/journal.pgen.1009221

Views: 2851 • Citations: 19 • Saves: 16 • Shares: 14

Duplication and divergence of the retrovirus restriction gene Fv1 in Mus caroli allows protection from multiple retroviruses

Melvyn W. Yap, George R. Young, Renata Varnaite, Serge Morand, Jonathan P. Stoye

Research Article | published 11 Jun 2020 PLOS Genetics

https://doi.org/10.1371/journal.pgen.1008471

Views: 2746 • Citations: 11 • Saves: 18 • Shares: 6

Relaxed constraint and functional divergence of the progesterone receptor (PGR) in the human stem-lineage

Mirna Marinić, Vincent J. Lynch

Research Article | published 17 Apr 2020 PLOS Genetics

https://doi.org/10.1371/journal.pgen.1008666

Views: 4141 • Citations: 10 • Saves: 34 • Shares: 14

Large scale variation in the rate of germ-line de novo mutation, base composition, divergence and diversity in humans

Thomas C. A. Smith, Peter F. Arndt, Adam Eyre-Walker

Research Article | published 28 Mar 2018 PLOS Genetics

https://doi.org/10.1371/journal.pgen.1007254

Views: 6414 • Citations: 82 • Saves: 83 • Shares: 15

Distinguishing functional polymorphism from random variation in the sequences of >10,000 HLA-A, -B and -C alleles

James Robinson, Lisbeth A. Guethlein, Nezih Cereb, Soo Young Yang, Paul J. Norman, Steven G. E. Marsh, Peter Parham

Research Article | published 26 Jun 2017 PLOS Genetics

https://doi.org/10.1371/journal.pgen.1006862

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Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding

Shubha Vij, Heiner Kuhl, Inna S. Kuznetsova, Aleksey Komissarov, Andrey A. Yurchenko, Peter Van Heusden, Siddharth Singh, Natascha M. Thevasagayam, Sai Rama Sridatta Prakki, Kathiresan Purushothaman, Jolly M. Saju, Junhui Jiang, Stanley Kimbung Mbandi, Mario Jonas, Amy Hin Yan Tong, Sarah Mwangi, Doreen Lau, Si Yan Ngoh, Woei Chang Liew, Xueyan Shen, Lawrence S. Hon, James P. Drake, Matthew Boitano, Richard Hall, Chen-Shan Chin, Ramkumar Lachumanan, Jonas Korlach, Vladimir Trifonov, Marsel Kabilov, Alexey Tupikin, Darrell Green, Simon Moxon, Tyler Garvin, Fritz J. Sedlazeck, Gregory W. Vurture, Gopikrishna Gopalapillai, Vinaya Kumar Katneni, Tansyn H. Noble, Vinod Scaria, Sridhar Sivasubbu, Dean R. Jerry, Stephen J. O'Brien, Michael C. Schatz, Tamás Dalmay, Stephen W. Turner, Si Lok, Alan Christoffels, László Orbán

Research Article | published 15 Apr 2016 PLOS Genetics

https://doi.org/10.1371/journal.pgen.1005954

Views: 16652 • Citations: 143 • Saves: 175 • Shares: 32

Bat Accelerated Regions Identify a Bat Forelimb Specific Enhancer in the HoxD Locus

Betty M. Booker, Tara Friedrich, Mandy K. Mason, Julia E. VanderMeer, Jingjing Zhao, Walter L. Eckalbar, Malcolm Logan, Nicola Illing, Katherine S. Pollard, Nadav Ahituv

Research Article | published 28 Mar 2016 PLOS Genetics

https://doi.org/10.1371/journal.pgen.1005738

Views: 10206 • Citations: 62 • Saves: 125 • Shares: 30

H-NS Facilitates Sequence Diversification of Horizontally Transferred DNAs during Their Integration in Host Chromosomes

Koichi Higashi, Toru Tobe, Akinori Kanai, Ebru Uyar, Shu Ishikawa, Yutaka Suzuki, Naotake Ogasawara, Ken Kurokawa, Taku Oshima

Research Article | published 20 Jan 2016 PLOS Genetics

https://doi.org/10.1371/journal.pgen.1005796

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Bacterial Infection Drives the Expression Dynamics of microRNAs and Their isomiRs

Katherine J. Siddle, Ludovic Tailleux, Matthieu Deschamps, Yong-Hwee Eddie Loh, Cécile Deluen, Brigitte Gicquel, Christophe Antoniewski, Luis B. Barreiro, Laurent Farinelli, Lluís Quintana-Murci

Research Article | published 20 Mar 2015 PLOS Genetics

https://doi.org/10.1371/journal.pgen.1005064

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Pervasive Variation of Transcription Factor Orthologs Contributes to Regulatory Network Evolution

Shilpa Nadimpalli, Anton V. Persikov, Mona Singh

Research Article | published 06 Mar 2015 PLOS Genetics

https://doi.org/10.1371/journal.pgen.1005011

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GC-Content Evolution in Bacterial Genomes: The Biased Gene Conversion Hypothesis Expands

Florent Lassalle, Séverine Périan, Thomas Bataillon, Xavier Nesme, Laurent Duret, Vincent Daubin

Research Article | published 06 Feb 2015 PLOS Genetics

https://doi.org/10.1371/journal.pgen.1004941

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Human Developmental Enhancers Conserved between Deuterostomes and Protostomes

Shoa L. Clarke, Julia E. VanderMeer, Aaron M. Wenger, Bruce T. Schaar, Nadav Ahituv, Gill Bejerano

Research Article | published 02 Aug 2012 PLOS Genetics

https://doi.org/10.1371/journal.pgen.1002852

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Localized Plasticity in the Streamlined Genomes of Vinyl Chloride Respiring Dehalococcoides

Paul J. McMurdie, Sebastian F. Behrens, Jochen A. Müller, Jonathan Göke, Kirsti M. Ritalahti, Ryan Wagner, Eugene Goltsman, Alla Lapidus, Susan Holmes, Frank E. Löffler, Alfred M. Spormann

Research Article | published 06 Nov 2009 PLOS Genetics

https://doi.org/10.1371/journal.pgen.1000714

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Widespread Genomic Signatures of Natural Selection in Hominid Evolution

Graham McVicker, David Gordon, Colleen Davis, Phil Green

Research Article | published 08 May 2009 PLOS Genetics

https://doi.org/10.1371/journal.pgen.1000471

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Evolution of Regulatory Sequences in 12 Drosophila Species

Jaebum Kim, Xin He, Saurabh Sinha

Research Article | published 09 Jan 2009 PLOS Genetics

https://doi.org/10.1371/journal.pgen.1000330

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April 2025
SuMoTuWeThFrSa
303112345
6789101112
13141516171819
20212223242526
27282930123
45678910