- Bayesian modeling of the impact of antibiotic resistance on the efficiency of MRSA decolonization
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Research Article | published 26 Oct 2023 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1010898
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- Examining the impact of ICU population interaction structure on modeled colonization dynamics of Staphylococcus aureus
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Research Article | published 25 Jul 2022 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1010352
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- Mass spectrometry and machine learning for the accurate diagnosis of benzylpenicillin and multidrug resistance of Staphylococcus aureus in bovine mastitis
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Research Article | published 11 Jun 2021 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1009108
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- Modelling pathogen spread in a healthcare network: Indirect patient movements
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Research Article | published 30 Nov 2020 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1008442
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- Predicting antimicrobial resistance using conserved genes
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Research Article | published 19 Oct 2020 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1008319
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- Medusa: Software to build and analyze ensembles of genome-scale metabolic network reconstructions
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Research Article | published 29 Apr 2020 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1007847
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- Machine learning with random subspace ensembles identifies antimicrobial resistance determinants from pan-genomes of three pathogens
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Research Article | published 02 Mar 2020 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1007608
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- Where did you come from, where did you go: Refining metagenomic analysis tools for horizontal gene transfer characterisation
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Research Article | published 23 Jul 2019 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1007208
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- Identifying determinants of persistent MRSA bacteremia using mathematical modeling
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Research Article | published 11 Jul 2019 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1007087
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- Host contact dynamics shapes richness and dominance of pathogen strains
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Research Article | published 21 May 2019 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1006530
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- A Bayesian model of acquisition and clearance of bacterial colonization incorporating within-host variation
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Research Article | published 22 Apr 2019 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1006534
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- A computational knowledge-base elucidates the response of Staphylococcus aureus to different media types
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Research Article | published 09 Jan 2019 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1006644
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- Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks
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Research Article | published 18 May 2017 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1005495
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- Dynamic Modelling Reveals ‘Hotspots’ on the Pathway to Enzyme-Substrate Complex Formation
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Research Article | published 11 Mar 2016 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1004811
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- Variations in the Binding Pocket of an Inhibitor of the Bacterial Division Protein FtsZ across Genotypes and Species
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Research Article | published 26 Mar 2015 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1004117
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