- RBC-GEM: A genome-scale metabolic model for systems biology of the human red blood cell
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Research Article | published 12 Mar 2025 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1012109
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- Quantitative and Kinetic Proteomics Reveal ApoE Isoform-dependent Proteostasis Adaptations in Mouse Brain
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Research Article | published 12 Dec 2024 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1012407
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- SPARTA: Interpretable functional classification of microbiomes and detection of hidden cumulative effects
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Research Article | published 18 Nov 2024 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1012577
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- Reliability of plastid and mitochondrial localisation prediction declines rapidly with the evolutionary distance to the training set increasing
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Research Article | published 11 Nov 2024 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1012575
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- GPMelt: A hierarchical Gaussian process framework to explore the dark meltome of thermal proteome profiling experiments
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Methods | published 27 Sep 2024 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1011632
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- The neglected giants: Uncovering the prevalence and functional groups of huge proteins in proteomes
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Research Article | published 16 Sep 2024 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1012459
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- Machine learning prediction of malaria vaccine efficacy based on antibody profiles
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Research Article | published 07 Jun 2024 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1012131
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- Identification of Low-Complexity Domains by Compositional Signatures Reveals Class-Specific Frequencies and Functions Across the Domains of Life
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Research Article | published 15 May 2024 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1011372
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- ECOD domain classification of 48 whole proteomes from AlphaFold Structure Database using DPAM2
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Research Article | published 28 Feb 2024 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1011586
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- StressME: Unified computing framework of Escherichia coli metabolism, gene expression, and stress responses
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Research Article | published 12 Feb 2024 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1011865
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- Plasticity of growth laws tunes resource allocation strategies in bacteria
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Research Article | published 08 Jan 2024 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1011735
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- Beam search decoder for enhancing sequence decoding speed in single-molecule peptide sequencing data
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Research Article | published 07 Nov 2023 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1011345
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- Pervasive, conserved secondary structure in highly charged protein regions
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Research Article | published 16 Oct 2023 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1011565
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- Flux balance analysis-based metabolic modeling of microbial secondary metabolism: Current status and outlook
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Review | published 24 Aug 2023 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1011391
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- Comparative Clustering (CompaCt) of eukaryote complexomes identifies novel interactions and sheds light on protein complex evolution
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Research Article | published 07 Aug 2023 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1011090
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