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PLOS Computational Biology  
Evolution of cooperation in multichannel games on multiplex networks

Amit Basak, Supratim Sengupta

Research Article | published 19 Dec 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012678

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Assessing the effect of model specification and prior sensitivity on Bayesian tests of temporal signal

John H. Tay, Arthur Kocher, Sebastian Duchene

Research Article | published 06 Nov 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012371

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Noise leads to the perceived increase in evolutionary rates over short time scales

Brian C. O’Meara, Jeremy M. Beaulieu

Research Article | published 13 Sep 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012458

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A phylogenetic method linking nucleotide substitution rates to rates of continuous trait evolution

Patrick Gemmell, Timothy B. Sackton, Scott V. Edwards, Jun S. Liu

Research Article | published 24 Apr 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1011995

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Evolutionary graph theory beyond pairwise interactions: Higher-order network motifs shape times to fixation in structured populations

Yang Ping Kuo, Oana Carja

Research Article | published 15 Mar 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1011905

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Combining the dynamic model and deep neural networks to identify the intensity of interventions during COVID-19 pandemic

Mengqi He, Sanyi Tang, Yanni Xiao

Research Article | published 18 Oct 2023 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1011535

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Atomistic simulation of protein evolution reveals sequence covariation and time-dependent fluctuations of site-specific substitution rates

Christoffer Norn, Ingemar André

Research Article | published 24 Mar 2023 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1010262

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Primate protein-ligand interfaces exhibit significant conservation and unveil human-specific evolutionary drivers

Sean B. King, Mona Singh

Research Article | published 23 Mar 2023 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1010966

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Social dilemmas of sociality due to beneficial and costly contagion

Daniel B. Cooney, Dylan H. Morris, Simon A. Levin, Daniel I. Rubenstein, Pawel Romanczuk

Research Article | published 21 Nov 2022 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1010670

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How public can public goods be? Environmental context shapes the evolutionary ecology of partially private goods

Brian A. Lerch, Derek A. Smith, Thomas Koffel, Sarah C. Bagby, Karen C. Abbott

Research Article | published 01 Nov 2022 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1010666

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Engineering indel and substitution variants of diverse and ancient enzymes using Graphical Representation of Ancestral Sequence Predictions (GRASP)

Gabriel Foley, Ariane Mora, Connie M. Ross, Scott Bottoms, Leander Sützl, Marnie L. Lamprecht, Julian Zaugg, Alexandra Essebier, Brad Balderson, Rhys Newell, Raine E. S. Thomson, Bostjan Kobe, Ross T. Barnard, Luke Guddat, Gerhard Schenk, Jörg Carsten, Yosephine Gumulya, Burkhard Rost, Dietmar Haltrich, Volker Sieber, Elizabeth M. J. Gillam, Mikael Bodén

Research Article | published 24 Oct 2022 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1010633

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Phase-locking patterns underlying effective communication in exact firing rate models of neural networks

David Reyner-Parra, Gemma Huguet

Research Article | published 18 May 2022 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1009342

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Comparative genomic analysis reveals varying levels of mammalian adaptation to coronavirus infections

Sean B. King, Mona Singh

Research Article | published 18 Nov 2021 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1009560

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Modeling the impact of single-cell stochasticity and size control on the population growth rate in asymmetrically dividing cells

Felix Barber, Jiseon Min, Andrew W. Murray, Ariel Amir

Research Article | published 21 Jun 2021 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1009080

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How does feedback from phage infections influence the evolution of phase variation in Campylobacter?

Simran K. Sandhu, Christopher D. Bayliss, Andrew Yu. Morozov

Research Article | published 14 Jun 2021 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1009067

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