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Dengue fever  
PLOS Computational Biology  
Predicting the infecting dengue serotype from antibody titre data using machine learning

Bethan Cracknell Daniels, Darunee Buddhari, Taweewun Hunsawong, Sopon Iamsirithaworn, Aaron R. Farmer, Derek A. T. Cummings, Kathryn B. Anderson, Ilaria Dorigatti

Research Article | published 23 Dec 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012188

Views: 694Citations: 0Saves: 15 • Shares: 1

Modelling the impact of JNJ-1802, a first-in-class dengue inhibitor blocking the NS3-NS4B interaction, on in-vitro DENV-2 dynamics

Clare P. McCormack, Olivia Goethals, Nele Goeyvaerts, Xavier D. Woot de Trixhe, Peggy Geluykens, Doortje Borrenberghs, Neil M. Ferguson, Oliver Ackaert, Ilaria Dorigatti

Research Article | published 06 Dec 2023 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1011662

Views: 2455Citations: 3Saves: 19 • Shares: 1

A simulation-based method to inform serosurvey design for estimating the force of infection using existing blood samples

Anna Vicco, Clare P. McCormack, Belen Pedrique, John H. Amuasi, Anthony Afum-Adjei Awuah, Christian Obirikorang, Nicole S. Struck, Eva Lorenz, Jürgen May, Isabela Ribeiro, Gathsaurie Neelika Malavige, Christl A. Donnelly, Ilaria Dorigatti

Research Article | published 27 Nov 2023 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1011666

Views: 1289Citations: 0Saves: 25 • Shares: 11

When does humoral memory enhance infection?

Ariel Nikas, Hasan Ahmed, Mia R. Moore, Veronika I. Zarnitsyna, Rustom Antia

Research Article | published 21 Aug 2023 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1011377

Views: 983Citations: 2Saves: 5 • Shares: 1

AIRRscape: An interactive tool for exploring B-cell receptor repertoires and antibody responses

Eric Waltari, Saba Nafees, Krista M. McCutcheon, Joan Wong, John E. Pak

Research Article | published 20 Sep 2022 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1010052

Views: 2907Citations: 5Saves: 21 • Shares: 6

An ensemble forecast system for tracking dynamics of dengue outbreaks and its validation in China

Yuliang Chen, Tao Liu, Xiaolin Yu, Qinghui Zeng, Zixi Cai, Haisheng Wu, Qingying Zhang, Jianpeng Xiao, Wenjun Ma, Sen Pei, Pi Guo

Research Article | published 27 Jun 2022 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1010218

Views: 2841Citations: 9Saves: 38 • Shares: 7

Addressing delayed case reporting in infectious disease forecast modeling

Lauren J. Beesley, Dave Osthus, Sara Y. Del Valle

Research Article | published 03 Jun 2022 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1010115

Views: 2135Citations: 11Saves: 38 • Shares: 6

Short-term and long-term epidemiological impacts of sustained vector control in various dengue endemic settings: A modelling study

Haoyang Sun, Joel Koo, Borame L. Dickens, Hannah E. Clapham, Alex R. Cook

Research Article | published 01 Apr 2022 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1009979

Views: 2103Citations: 5Saves: 32 • Shares: 4

Fine-scale estimation of effective reproduction numbers for dengue surveillance

Janet Ong, Stacy Soh, Soon Hoe Ho, Annabel Seah, Borame Sue Dickens, Ken Wei Tan, Joel Ruihan Koo, Alex R. Cook, Daniel R. Richards, Leon Yan-Feng Gaw, Lee Ching Ng, Jue Tao Lim

Research Article | published 20 Jan 2022 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1009791

Views: 2561Citations: 8Saves: 38 • Shares: 5

Spatial and temporal invasion dynamics of the 2014–2017 Zika and chikungunya epidemics in Colombia

Kelly Charniga, Zulma M. Cucunubá, Marcela Mercado, Franklyn Prieto, Martha Ospina, Pierre Nouvellet, Christl A. Donnelly

Research Article | published 02 Jul 2021 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1009174

Views: 2733Citations: 7Saves: 30 • Shares: 19

Disease-driven reduction in human mobility influences human-mosquito contacts and dengue transmission dynamics

Kathryn L. Schaber, T. Alex Perkins, Alun L. Lloyd, Lance A. Waller, Uriel Kitron, Valerie A. Paz-Soldan, John P. Elder, Alan L. Rothman, David J. Civitello, William H. Elson, Amy C. Morrison, Thomas W. Scott, Gonzalo M. Vazquez-Prokopec

Research Article | published 19 Jan 2021 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1008627

Views: 3036Citations: 24Saves: 72 • Shares: 5

Time varying methods to infer extremes in dengue transmission dynamics

Jue Tao Lim, Yiting Han, Borame Sue Lee Dickens, Lee Ching Ng, Alex R. Cook

Research Article | published 12 Oct 2020 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1008279

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Inference on dengue epidemics with Bayesian regime switching models

Jue Tao Lim, Borame Sue Dickens, Sun Haoyang, Ng Lee Ching, Alex R. Cook

Research Article | published 01 May 2020 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1007839

Views: 3850Citations: 16Saves: 39 • Shares: 7

Optimizing the deployment of ultra-low volume and targeted indoor residual spraying for dengue outbreak response

Sean M. Cavany, Guido España, Alun L. Lloyd, Lance A. Waller, Uriel Kitron, Helvio Astete, William H. Elson, Gonzalo M. Vazquez-Prokopec, Thomas W. Scott, Amy C. Morrison, Robert C. Reiner Jr., T. Alex Perkins

Research Article | published 20 Apr 2020 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1007743

Views: 3335Citations: 35Saves: 102 • Shares: 15

Nowcasting by Bayesian Smoothing: A flexible, generalizable model for real-time epidemic tracking

Sarah F. McGough, Michael A. Johansson, Marc Lipsitch, Nicolas A. Menzies

Research Article | published 06 Apr 2020 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1007735

Views: 11500Citations: 104Saves: 96 • Shares: 54

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