- Computational modelling identifies primary mediators of crosstalk between DNA damage and oxidative stress responses
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Research Article | published 10 Mar 2025 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1012844
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- Quantitative evaluation of DNA damage repair dynamics to elucidate predictors of autism vs. cancer in individuals with germline PTEN variants
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Research Article | published 02 Oct 2024 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1012449
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- Reusable rule-based cell cycle model explains compartment-resolved dynamics of 16 observables in RPE-1 cells
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Research Article | published 08 Jan 2024 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1011151
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- A quantitative modelling approach for DNA repair on a population scale
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Research Article | published 12 Sep 2022 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1010488
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- Model-based translation of DNA damage signaling dynamics across cell types
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Research Article | published 08 Jul 2022 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1010264
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- LncRNAs of Saccharomyces cerevisiae bypass the cell cycle arrest imposed by ethanol stress
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Research Article | published 19 May 2022 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1010081
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- A modular approach for modeling the cell cycle based on functional response curves
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Research Article | published 11 Aug 2021 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1009008
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- Hi-C implementation of genome structure for in silico models of radiation-induced DNA damage
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Research Article | published 16 Dec 2020 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1008476
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- Nuclear plasticity increases susceptibility to damage during confined migration
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Research Article | published 09 Oct 2020 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1008300
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- The Beacon Calculus: A formal method for the flexible and concise modelling of biological systems
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Research Article | published 09 Mar 2020 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1007651
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- Determinants of drug-target interactions at the single cell level
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Research Article | published 20 Dec 2018 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1006601
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- Activation of the DNA-repair mechanism through NBS1 and MRE11 diffusion
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Research Article | published 27 Jul 2018 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1006362
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- Mechanical evolution of DNA double-strand breaks in the nucleosome
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Research Article | published 14 Jun 2018 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1006224
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- A model of the onset of the senescence associated secretory phenotype after DNA damage induced senescence
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Research Article | published 04 Dec 2017 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1005741
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- BeWith: A Between-Within method to discover relationships between cancer modules via integrated analysis of mutual exclusivity, co-occurrence and functional interactions
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Research Article | published 12 Oct 2017 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1005695
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