- An Epigenomic fingerprint of human cancers by landscape interrogation of super enhancers at the constituent level
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Research Article | published 09 Feb 2024 PLOS Computational Biology
- Covering Hierarchical Dirichlet Mixture Models on binary data to enhance genomic stratifications in onco-hematology
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Methods | published 02 Feb 2024 PLOS Computational Biology
- Refphase: Multi-sample phasing reveals haplotype-specific copy number heterogeneity
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Research Article | published 23 Oct 2023 PLOS Computational Biology
- A mutation-level covariate model for mutational signatures
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Research Article | published 05 Jun 2023 PLOS Computational Biology
- Metheor: Ultrafast DNA methylation heterogeneity calculation from bisulfite read alignments
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Research Article | published 20 Mar 2023 PLOS Computational Biology
- Regional mutational signature activities in cancer genomes
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Research Article | published 05 Dec 2022 PLOS Computational Biology
- Ten simple rules for a successful international consortium in big data omics
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Editorial | published 20 Oct 2022 PLOS Computational Biology
- CNAViz: An interactive webtool for user-guided segmentation of tumor DNA sequencing data
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Research Article | published 13 Oct 2022 PLOS Computational Biology
- Chromatin accessibility of primary human cancers ties regional mutational processes and signatures with tissues of origin
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Research Article | published 10 Aug 2022 PLOS Computational Biology
- Inferring ongoing cancer evolution from single tumour biopsies using synthetic supervised learning
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Research Article | published 28 Apr 2022 PLOS Computational Biology
- Tumor cell intrinsic and extrinsic features predict prognosis in estrogen receptor positive breast cancer
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Research Article | published 09 Mar 2022 PLOS Computational Biology
- DNA methylation-based classifier and gene expression signatures detect BRCAness in osteosarcoma
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Research Article | published 11 Nov 2021 PLOS Computational Biology
- Deciphering the molecular mechanism of the cancer formation by chromosome structural dynamics
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Research Article | published 09 Nov 2021 PLOS Computational Biology
- miQC: An adaptive probabilistic framework for quality control of single-cell RNA-sequencing data
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Research Article | published 24 Aug 2021 PLOS Computational Biology
- Evaluation and comparison of multi-omics data integration methods for cancer subtyping
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Research Article | published 12 Aug 2021 PLOS Computational Biology
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