- Generative AI extracts ecological meaning from the complex three dimensional shapes of bird bills
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Research Article | published 17 Mar 2025 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1012887
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- Interpretable metric learning in comparative metagenomics: The adaptive Haar-like distance
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Methods | published 20 May 2024 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1011543
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- A phylogenetic method linking nucleotide substitution rates to rates of continuous trait evolution
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Research Article | published 24 Apr 2024 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1011995
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- A real data-driven simulation strategy to select an imputation method for mixed-type trait data
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Research Article | published 22 Mar 2023 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1010154
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- Insertions and deletions as phylogenetic signal in an alignment-free context
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Research Article | published 08 Aug 2022 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1010303
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- Inter-paralog amino acid inversion events in large phylogenies of duplicated proteins
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Research Article | published 04 Apr 2022 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1010016
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- A new phylodynamic model of Mycobacterium bovis transmission in a multi-host system uncovers the role of the unobserved reservoir
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Research Article | published 25 Jun 2021 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1009005
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- Mapping molar shapes on signaling pathways
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Research Article | published 14 Dec 2020 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1008436
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- Verbalizing phylogenomic conflict: Representation of node congruence across competing reconstructions of the neoavian explosion
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Research Article | published 15 Feb 2019 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1006493
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- Phylogeny-corrected identification of microbial gene families relevant to human gut colonization
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Research Article | published 09 Aug 2018 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1006242
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- Predicting cryptic links in host-parasite networks
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Research Article | published 25 May 2017 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1005557
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- Phylogenetic Analysis Reveals That ERVs "Die Young" but HERV-H Is Unusually Conserved
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Research Article | published 13 Jun 2016 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1004964
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- Incomplete Lineage Sorting and Hybridization Statistics for Large-Scale Retroposon Insertion Data
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Research Article | published 11 Mar 2016 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1004812
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- Epidemic Reconstruction in a Phylogenetics Framework: Transmission Trees as Partitions of the Node Set
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Research Article | published 30 Dec 2015 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1004613
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- SubClonal Hierarchy Inference from Somatic Mutations: Automatic Reconstruction of Cancer Evolutionary Trees from Multi-region Next Generation Sequencing
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Research Article | published 05 Oct 2015 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1004416
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