15 Jan 2010: Nathanson CG, Tarnita CE, Nowak MA (2010) Correction: Calculating Evolutionary Dynamics in Structured Populations. PLOS Computational Biology 6(1): 10.1371/annotation/064a9048-e6f7-4cf8-b259-f40cfb6696ba. https://doi.org/10.1371/annotation/064a9048-e6f7-4cf8-b259-f40cfb6696ba View correction
Evolution is shaping the world around us. At the core of every evolutionary process is a population of reproducing individuals. The outcome of an evolutionary process depends on population structure. Here we provide a general formula for calculating evolutionary dynamics in a wide class of structured populations. This class includes the recently introduced “games in phenotype space” and “evolutionary set theory.” There can be local interactions for determining the relative fitness of individuals, but we require global updating, which means all individuals compete uniformly for reproduction. We study the competition of two strategies in the context of an evolutionary game and determine which strategy is favored in the limit of weak selection. We derive an intuitive formula for the structure coefficient, σ, and provide a method for efficient numerical calculation.
At the center of any evolutionary process is a population of reproducing individuals. The structure of this population can greatly affect the outcome of evolution. If the fitness of an individual is determined by its interactions with others, then we are in the world of evolutionary game theory. The population structure specifies who interacts with whom. We derive a simple formula that holds for a wide class of such evolutionary processes. This formula provides an efficient computational method for studying evolutionary dynamics in structured populations.
Citation: Nathanson CG, Tarnita CE, Nowak MA (2009) Calculating Evolutionary Dynamics in Structured Populations. PLoS Comput Biol 5(12): e1000615. https://doi.org/10.1371/journal.pcbi.1000615
Editor: Carl T. Bergstrom, University of Washington, United States of America
Received: August 12, 2009; Accepted: November 16, 2009; Published: December 18, 2009
Copyright: © 2009 Nathanson et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Funding: This work was supported by the John Templeton Foundation, the NSF/NIH joint program in mathematical biology (NIH grant R01GM078986), the Bill and Melinda Gates Foundation (Grand Challenges grant 37874) and Jeffrey Epstein. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
Competing interests: The authors have declared that no competing interests exist.
Constant selection implies that the fitness of individuals does not depend on the composition of the population. In general, however, the success of individuals is affected by what others are doing. Then we are in the realm of game theory – or evolutionary game theory –. The latter is the study of frequency dependent selection; the fitness of individuals is typically assumed to be a linear function of the frequencies of strategies (or phenotypes) in the population. The population is trying to adapt on a dynamic fitness landscape; the changes in the fitness landscape are caused by the population that moves over it . There is also a close relationship between evolutionary game theory and ecology : the success of a species in an ecosystem depends on its own abundance and the abundance of other species.
The classical approach to evolutionary game dynamics is based on deterministic differential equations describing infinitely large, well-mixed populations ,. In a well-mixed population any two individuals interact equally likely. Some recent approaches consider stochastic evolutionary dynamics in populations of finite size ,. Evolutionary game dynamics are also affected by population structure –. For example, a well-mixed population typically opposes evolution of cooperation, while a structured population can promote it. There is also a long standing tradition of studying spatial models in ecology –, population genetics , and inclusive fitness theory –.
Evolutionary graph theory is an extension of spatial games, which are normally studied on regular lattices, to general graphs –. The graph determines who meets whom and reflects physical structure or social networks. The payoff of individuals is derived from local interactions with their neighbors on the graph. Moreover, individuals compete locally with their neighbors for reproduction. These two processes can also be described by separate graphs .
‘Games in phenotype space’  represent another type of spatial model for evolutionary dynamics, which is motivated by the idea of tag based cooperation –. In addition to behavioral strategies, individuals express other phenotypic features which serve as markers of identification. In one version of the model, individuals interact only with those who carry the same phenotypic marker. This approach can lead to a clustering in phenotype space, which can promote evolution of cooperation .
‘Evolutionary set theory’ represents another type of spatial model . Each individual can belong to several sets. At a particular time, some sets have many members, while others are empty. Individuals interact with others in the same set and thereby derive a payoff. Individuals update their set memberships and strategies by global comparison with others. Successful strategies spawn imitators, and successful sets attract more members. Therefore, the population structure is described by an ever changing, dynamical graph. Evolutionary dynamics in set structured populations can favor cooperators over defectors.
In all three frameworks – evolutionary graph theory, games in phenotype space and evolutionary set theory – the fitness of individuals is a consequence of local interactions. In evolutionary graph theory there is also a local update rule: individuals learn from their neighbors on the graph or compete with nearby individuals for placing offspring. For evolutionary set theory, however,  assumes global updating: individuals can learn from all others in the population and adopt their strategies and set memberships. Global updating is also a feature of the model for games in phenotype space . The approach that is presented in this paper requires global updating. Therefore, our result holds for evolutionary set theory and for games in phenotype space, but does not apply to evolutionary graph theory.
Consider a game between two strategies, and . If two players interact, both get payoff ; if interacts with , then gets and gets ; if two players interact, both get . These interactions are represented by the payoff matrix(1)We consider a population of finite size . Each individual uses either strategy or . In the framework that we investigate here, the population structure specifies how people interact to derive their payoff. It could be that some individuals interact while others do not, or that some individuals interact stronger or more frequently than others. For example, in evolutionary set theory individuals interact with others who are in the same set and two individuals interact as many times as they have sets in common; in games in phenotype space, individuals interact with others who share the same phenotype.
Based on these interactions, individuals derive a cumulative payoff, . The fitness of an individual is given by where the parameter characterizes the intensity of selection. In this paper we consider the limit of weak selection, .
Reproduction is proportional to fitness but subject to mutation. With probability the offspring adopts the strategy of the parent. With probability a random strategy is chosen (which is either or ).
A state of the population contains all information that can affect the payoffs of players. It assigns to each player a strategy ( or ) and a ‘location’ (in space, phenotype space etc). Thus, one can think of a state as a binary vector which specifies the strategy of each individual, together with a real matrix whose -th entry specifies the weight of the interaction of individual with . For example, in evolutionary set theory, the -th entry of this matrix gives the number of sets and have in common . Note that this matrix is not necessarily symmetric: the weight of 's interaction with might be different from the weight of 's interaction with . In this paper, whenever we refer to the number of interactions between individuals, we always count them with their weights or multiplicities.
For our proof we assume a finite state space and we study the Markov process defined by gameplay together with the update rule on this state space. The Markov process has a unique stationary distribution defined over all states.
It is shown in  that for weak selection, the condition that is more abundant than in the stationary distribution of the mutation-selection process described above can be written as(2)Therefore, the crucial condition specifying which strategy is more abundant is a linear inequality in the payoff values, . The structure coefficient, , can depend on the population structure, the update rule, the population size and the mutation rate, but not on the payoff values, and . This ‘structural dominance’ condition (2) holds for a wide variety of population structures and update rules, including games in well mixed populations ,, games on graphs –, games in phenotype space  and games in set structured populations .
For a large well-mixed population we obtain . Therefore, the standard risk-dominance type condition, , specifies if is more abundant than . Spatial structure leads to values that are greater than 1. The larger the greater is the deviation from the well mixed population. For very large strategy is more abundant than if . Therefore, spatial structure promotes Pareto efficiency over risk dominance . If a spatial model generates then it is a mechanism for the evolution of cooperation .
Here we derive a formula for that holds for all processes satisfying two conditions:
- global updating, which means individuals compete uniformly with all others for reproduction and
- constant birth or death rate which means the payoff from the game can affect either the birth rate or the death rate but not both.
These assumptions are fulfilled, for example, by games in phenotype space  and by games on sets . They do not hold, however, for games on graphs . The first assumption is necessary because our calculation requires that the update rule depends only on fitness, and not on locality. Local update rules are less well-behaved and can even lead to negative values of . The second assumption insures that the change in the frequency of players is due only to a change in selection. Without this second assumption the conditions would be more complicated.
For each state of the system, let be the number of individuals using strategy ; the number of individuals using strategy is . Furthermore, let denote the total number of encounters that individuals have with other individuals. Note that every pair is counted twice because each individual in the pair has an encounter with another individual. As specified before, whenever we say ‘number of interactions’ we count the interactions together with their weights (if such weights occur in the model). Let denote the total number of interactions that an individual has with individuals. Our main result is that the structure coefficient, , can be written as(3)The notation means that the quantity is averaged over all states of the stochastic process under neutral drift, ; each term of the average is weighted by the frequency of the corresponding state in the stationary distribution. Intuitively, captures how much more likely it is, on average, for an individual to play with his own kind rather than with the other kind. An illustration of this formula is shown in Figure 1.
Suppose there is a ‘spatial’ process which has two mixed states. These two states must have the same frequency in the stationary distribution at neutrality, because the process cannot introduce asymmetries between and at neutrality. Each mixed state can be described by a weighted, directed graph: in a state with players, let be the probability that an plays with another and let be the probability that an plays with a . These probabilities are enough since for the calculation of we only need the edges and the edges. Note also that the pure states, all- and all-, do not contribute to the calculation. We obtain .
This formula suggests a simple numerical algorithm for calculating the -factor for any spatial process with global updating. We let the process run for a very long time assuming that all individuals have the same fitness. Thus, we simulate mutation and neutral drift on a spatial structure. For each state we evaluate , , and . We add up all terms to get the numerator in eq (3). We add up all terms to get the denominator. The resulting can be used for any game given by the payoff matrix (1) to determine if strategy is more frequent than strategy in the limit of weak selection.
The rigorous proof of eq (3) is given in Appendix A; here we provide an intuition for it. For symmetry reasons, at neutrality, we have the following identities and . Using these symmetries together with our formula (3), we rewrite condition (2) as(4)Denoting by the average number of interactions of individuals with individuals, we can further rewrite eq. (4) as(5)Here is the frequency of individuals, is the average payoff of an -individual and is the average payoff of a -individual. These are and .
A standard replicator equation for deterministic evolutionary game dynamics of two strategies in a well-mixed population can be written as where is the time derivative of the change due to selection and and denote the average payoffs for and if the frequency of is . This equation describes how selection alone changes the frequency of strategy over time. Hence, the condition that strategy is favored by selection is where the average is now taken over all states of the mutation-selection process, in the presence of game (). In the limit of weak selection, one can write the first-order Taylor expansion of this inequality to obtain . Since at neutrality the average change in the frequency of is zero, our condition for strategy to be favored over strategy becomes which is precisely inequality (5). Therefore inequality (5) has a very intuitive interpretation.
Evolution of cooperation
As a particular game we can study the evolution of cooperation. Consider the simplified Prisoner's Dilemma payoff matrix:(6)This means cooperators, , pay a cost for others to receive a benefit, . Defectors, , pay no cost and distribute no benefits. The game is a Prisoner's Dilemma if .
As shown in , if we use equation (2) we can always write the critical benefit-to-cost ratio as(7)provided . If the benefit-to-cost ratio exceeds this critical value, then cooperators are more abundant than defectors in the mutation-selection equilibrium of the stochastic process for weak selection. A higher corresponds to a lower benefit-to-cost ratio and is thus better for the evolution of cooperation.
From eqs (3) and (7) we can write(8)This formula is very useful for finding the critical benefit-to-cost ratio numerically. Moreover, we can rewrite the critical benefit-to-cost ratio in terms of average number of interactions rather than total number of interactions as(9)These equations provide intuitive formulations of the critical benefit-to-cost ratio for processes with global updating.
Computational example: Evolutionary dynamics on sets
Our new formula for (eq. 3) gives a simple numerical algorithm for calculating this quantity in any spatial process with global updating and constant birth or death rate. We simulate this process under neutral drift for many generations. For each state we evaluate , , and . We add up all products to get the numerator in eq (3), and then we add up all products to get the denominator. The resulting can be used for any game given by the payoff matrix (1) to determine if strategy is more frequent than strategy in the limit of weak selection.
In this section we use the simple numerical algorithm suggested by our formula (3) to find for evolutionary dynamics on sets . In that paper, the authors compute an exact analytic formula for that depends on the parameters of their model. We compare our simulated estimates for with their theoretical values and find perfect agreement (Figure 2). Furthermore, we use our computational method to calculate in an extension of the original model. An analytic solution for this extended model has not yet been found. Thus our simulated estimates constitute the first “solution” of this extended model (Figure 3).
We test our simulation procedure against the analytic results of the set model of . Parameters used are and . or is the number of sets an individual is in, is the strategy mutation, and is the set mutation. We run simulations for generations. We use a low strategy mutation in (A) and a high strategy mutation in (B).
An individual can be in 1, 2, or 3 sets; when he mutates set membership, the number of sets he joins is drawn with uniform probability. Parameter values are , ; is the strategy mutation rate and is the set mutation rate. We run the simulation using the method of eq. (3) for generations. Dots indicate simulated results, which are interpolated with a smooth curve. This variable set membership model has not yet been solved analytically. (A) The interpolated curve for small strategy mutation compared to the analytical result for or . (B) The interpolated curve for high strategy mutation rate compared to the analytical result for or .
The original set-structured model describes a population of individuals distributed over sets. Individuals interact with others who belong to the same set. Two individuals interact as many times as they have sets in common, and these interactions lead to payoffs from a game as described in general in Section 2. Reproductive updating follows a Wright-Fisher process, where individuals are selected with replacement to seed the next generation. The more fit an individual, the more likely it is to be chosen as a parent. An offspring adopts the parent's strategy with probability , as described in Section 2. The offspring adopts the parent's set memberships, but this inheritance is also subject to mutation; with probability , an offspring adopts a random list of set memberships. This updating process can be thought of as imitation-based dynamics where both strategies and set memberships are subject to selection .
To obtain exact analytical calculations, it is assumed that each individual belongs to exactly sets. In Figure 2, we pick values for , and and plot as a function of the set mutation rate, . The continuous curves are based on the analytic formula for derived in . The new numerical algorithm generates the data points. There is perfect agreement between these two methods.
In Figure 3, we consider a variant of this model. Instead of belonging to exactly sets, individuals now belong to at most sets. With probability , an offspring adopts a random list of at most memberships, the length of which is uniformly random. So far there exists no analytical solution for this model but we can use eq. (3) to compute numerically. We interpolate the numerical results with smooth curves. We observe that for low mutation, Fig. 3(A), the case gives a which is smaller than the case. Hence, for low mutation, allowing people to be in at most sets turns out to be worse for cooperation than restricting them to be in exactly sets. However, for high strategy mutation, Fig. 3(B), the for is greater than the one for . Hence, for high strategy mutation, allowing individuals to be in at most sets seems to be better for cooperation than restricting them to be in exactly sets. This suggests that there exists an intermediate strategy mutation rate where the two cases are similar.
It has been shown that evolutionary dynamics in a structured population can be described by a single parameter, , if we are merely interested in the question, which of the two competing strategies, or , is more abundant in the limit of weak selection . Payoff matrix (1) describes the interaction between the two strategies and and the inequality specifies that is more abundant than in the mutation-selection equilibrium. In general the parameter can depend on the population structure (which specifies who interacts with whom for accumulating payoff and for evolutionary updating), the population size and the mutation rates; but it does not depend on the entries of the payoff matrix. The parameter has been explicitly calculated for a number of models including games on graphs, games in phenotype space, games in set structured populations and a simple model of multi-level selection .
Here we provide a general formula for the factor, which holds for the case of global updating. Global updating means that all members of the population compete globally (as opposed to locally) for reproduction. For example, global updating arises in the following way: one individual reproduces and another random individual dies (in order to maintain constant population size); the offspring of the first individual might inherit (up to mutation) the strategy and the ‘location’ of the parent. Global updating is a feature of models for games in phenotype space  and for games on sets .
Our main result, eq (3), provides both an intuitive description of what the factor is and an efficient way for numerical computation.
Materials and Methods
Here we give the proof of equation (3). It is based on the following three claims which we prove in the next subsection:
First, we show that for structures and update rules with either constant death rate or constant birth rate the condition(10)for strategy to be favored over strategy is equivalent to(11)where and are the total birth and death rates of players and is the change due to selection averaged over all states of the system, weighted by the probability that the system is in each state. The change due to selection in the frequency of in each state is the difference between the number of 's that are born and the number of 's that die.
We show that for global updating, condition (11) is equivalent to(12)Here denotes the average over the stationary distribution in the neutral process, .
Finally we claim that, in the limit of weak selection, for structures satisfying global updating and constant death or birth, the difference between the birth rate and death rate of an individual in state can be written in terms of the payoff of individual as:(13)where is the total payoff of players in the given state .
Combining the three claims, we conclude that condition (10) is equivalent to(14)Using the weighted number of interactions between players, we can rewrite the total payoffs in any given state asThus, condition (14) is equivalent to(16)However, since , by symmetry at neutrality we have that and . Hence (16) is equivalent to(17)where(18)This concludes the proof of the main result. Below we give the proofs for the three claims made above.
Proofs of Claims
Proof of Claim 1.
By assumption, either birth or death has a fixed rate; assume without loss of generality that death is constant with rate . In a given state, the expected change in the frequency of individuals is(19)We simplify this equation using the following three relations: since the population size is fixed; and since the death rate is constant and, finally . Moreover, we know that on average selection and mutation balance each other, so the average total change in the frequency of individuals is zero, i.e. . Using all these into (19) we conclude that(20)This proves the claim. Note that this claim holds for any intensity of selection.
Proof of Claim 2.
As in , we are assuming that the transition probabilities are differentiable functions of at . Then, in the limit of weak selection, we can write the first-order Taylor expansion of at (21)For global updating, the average change due to selection in the neutral process is zero, i.e. . Moreover, using the product rule, we write:(22)Here we used the fact that for neutrality, under global updating in a fixed population size, individuals have equal birth and death rates; hence, for all states . This gives the desired result.
Proof of Claim 3.
Again, we assume without loss of generality that the death rate is constant, equal to . In neutrality, all individuals have effective payoff . As noted in the proof of Claim 2, an individual has equal birth and death rates at neutrality, . Thus, in the limit of weak selection, we can write the first-order Taylor expansion at and obtain(23)When , the birth rate of each individual depends on the effective payoff of any other individual, which itself is a function of : . Hence (23) can be rewritten using the chain rule as(24)Because the population size is fixed, we have . Hence, summing (24) we obtain(25)When all individuals have the same fitness. Therefore, by the symmetry imposed by global updating, we have: for all and and for all and . It thus follows from (25) that for each (26)Thus, we can rewrite (24) aswhich gives the desired result.
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