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DNA transcription  
PLOS Biology  
Alternative TSS use is widespread in Cryptococcus fungi in response to environmental cues and regulated genome-wide by the transcription factor Tur1

Thi Tuong Vi Dang, Corinne Maufrais, Jessie Colin, Frédérique Moyrand, Isabelle Mouyna, Jean-Yves Coppée, Chinaemerem U. Onyishi, Joanna Lipecka, Ida Chiara Guerrera, Robin C. May, Guilhem Janbon

Research Article | published 25 Jul 2024 PLOS Biology

https://doi.org/10.1371/journal.pbio.3002724

Views: 1798Citations: 1Saves: 2 • Shares: 0

Promoter recruitment drives the emergence of proto-genes in a long-term evolution experiment with Escherichia coli

Md. Hassan uz-Zaman, Simon D’Alton, Jeffrey E. Barrick, Howard Ochman

Research Article | published 07 May 2024 PLOS Biology

https://doi.org/10.1371/journal.pbio.3002418

Views: 3728Citations: 2Saves: 5 • Shares: 74

Structural and functional characterization of AfsR, an SARP family transcriptional activator of antibiotic biosynthesis in Streptomyces

Yiqun Wang, Xu Yang, Feng Yu, Zixin Deng, Shuangjun Lin, Jianting Zheng

Research Article | published 01 Mar 2024 PLOS Biology

https://doi.org/10.1371/journal.pbio.3002528

Views: 2874Citations: 5Saves: 9 • Shares: 7

Transcription induces context-dependent remodeling of chromatin architecture during differentiation

Sanjay Chahar, Yousra Ben Zouari, Hossein Salari, Dominique Kobi, Manon Maroquenne, Cathie Erb, Anne M. Molitor, Audrey Mossler, Nezih Karasu, Daniel Jost, Tom Sexton

Research Article | published 04 Dec 2023 PLOS Biology

https://doi.org/10.1371/journal.pbio.3002424

Views: 3031Citations: 9Saves: 17 • Shares: 43

Systematic and scalable genome-wide essentiality mapping to identify nonessential genes in phages

Denish Piya, Nicholas Nolan, Madeline L. Moore, Luis A. Ramirez Hernandez, Brady F. Cress, Ry Young, Adam P. Arkin, Vivek K. Mutalik

Methods and Resources | published 04 Dec 2023 PLOS Biology

https://doi.org/10.1371/journal.pbio.3002416

Views: 5434Citations: 14Saves: 39 • Shares: 84

Systematic characterization of photoperiodic gene expression patterns reveals diverse seasonal transcriptional systems in Arabidopsis

Chun Chung Leung, Daniel A. Tarté, Lilijana S. Oliver, Qingqing Wang, Joshua M. Gendron

Methods and Resources | published 12 Sep 2023 PLOS Biology

https://doi.org/10.1371/journal.pbio.3002283

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Combating castration-resistant prostate cancer by co-targeting the epigenetic regulators EZH2 and HDAC

Amy E. Schade, Ryan Kuzmickas, Carrie L. Rodriguez, Kaia Mattioli, Miriam Enos, Alycia Gardner, Karen Cichowski

Short Reports | published 27 Apr 2023 PLOS Biology

https://doi.org/10.1371/journal.pbio.3002038

Views: 4893Citations: 16Saves: 17 • Shares: 7

Gre factors help Salmonella adapt to oxidative stress by improving transcription elongation and fidelity of metabolic genes

Sashi Kant, James Karl A. Till, Lin Liu, Alyssa Margolis, Siva Uppalapati, Ju-Sim Kim, Andres Vazquez-Torres

Research Article | published 04 Apr 2023 PLOS Biology

https://doi.org/10.1371/journal.pbio.3002051

Views: 3407Citations: 11Saves: 10 • Shares: 7

TXNIP loss expands Myc-dependent transcriptional programs by increasing Myc genomic binding

Tian-Yeh Lim, Blake R. Wilde, Mallory L. Thomas, Kristin E. Murphy, Jeffery M. Vahrenkamp, Megan E. Conway, Katherine E. Varley, Jason Gertz, Donald E. Ayer

Research Article | published 17 Mar 2023 PLOS Biology

https://doi.org/10.1371/journal.pbio.3001778

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EGR1 drives cell proliferation by directly stimulating TFEB transcription in response to starvation

Marcella Cesana, Gennaro Tufano, Francesco Panariello, Nicolina Zampelli, Susanna Ambrosio, Rossella De Cegli, Margherita Mutarelli, Lorenzo Vaccaro, Micheal J. Ziller, Davide Cacchiarelli, Diego L. Medina, Andrea Ballabio

Short Reports | published 08 Mar 2023 PLOS Biology

https://doi.org/10.1371/journal.pbio.3002034

Views: 3327Citations: 11Saves: 21 • Shares: 10

Combined modelling of mRNA decay dynamics and single-molecule imaging in the Drosophila embryo uncovers a role for P-bodies in 5′ to 3′ degradation

Lauren Forbes Beadle, Jennifer C. Love, Yuliya Shapovalova, Artem Artemev, Magnus Rattray, Hilary L. Ashe

Research Article | published 17 Jan 2023 PLOS Biology

https://doi.org/10.1371/journal.pbio.3001956

Views: 3580Citations: 17Saves: 13 • Shares: 12

The RNA export and RNA decay complexes THO and TRAMP prevent transcription-replication conflicts, DNA breaks, and CAG repeat contractions

Rebecca E. Brown, Xiaofeng A. Su, Stacey Fair, Katherine Wu, Lauren Verra, Robyn Jong, Kristin Andrykovich, Catherine H. Freudenreich

Research Article | published 27 Dec 2022 PLOS Biology

https://doi.org/10.1371/journal.pbio.3001940

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ERK1/2 signalling dynamics promote neural differentiation by regulating chromatin accessibility and the polycomb repressive complex

Claudia I. Semprich, Lindsay Davidson, Adriana Amorim Torres, Harshil Patel, James Briscoe, Vicki Metzis, Kate G. Storey

Research Article | published 01 Dec 2022 PLOS Biology

https://doi.org/10.1371/journal.pbio.3000221

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Global genome decompaction leads to stochastic activation of gene expression as a first step toward fate commitment in human hematopoietic cells

Romuald Parmentier, Laëtitia Racine, Alice Moussy, Sophie Chantalat, Ravi Sudharshan, Nan Papili Gao, Daniel Stockholm, Guillaume Corre, Geneviève Fourel, Jean-François Deleuze, Rudiyanto Gunawan, Andras Paldi

Research Article | published 26 Oct 2022 PLOS Biology

https://doi.org/10.1371/journal.pbio.3001849

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Endomitosis controls tissue-specific gene expression during development

Lotte M. van Rijnberk, Ramon Barrull-Mascaró, Reinier L. van der Palen, Erik S. Schild, Hendrik C. Korswagen, Matilde Galli

Research Article | published 24 May 2022 PLOS Biology

https://doi.org/10.1371/journal.pbio.3001597

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