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Systems biology

Curating models from BioModels: Developing a workflow for creating OMEX files

Jin Xu, Lucian Smith

Benchmarking methods for computing local sensitivities in ordinary differential equation models at dynamic and steady states

Polina Lakrisenko, Dilan Pathirana, Daniel Weindl, Jan Hasenauer

Path-enhanced graph convolutional networks for node classification without features

Qingju Jiao, Peige Zhao, [ ... ], Guoying Liu

Informative and adaptive distances and summary statistics in sequential approximate Bayesian computation

Yannik Schälte, Jan Hasenauer

Spatial distribution of the Shannon entropy for mass spectrometry imaging

Lili Xu, Kenji Kikushima, [ ... ], Mitsutoshi Setou

scAEGAN: Unification of single-cell genomics data by adversarial learning of latent space correspondences

Sumeer Ahmad Khan, Robert Lehmann, [ ... ], Jesper Tegner

BioSANS: A software package for symbolic and numeric biological simulation

Erickson Fajiculay, Chao-Ping Hsu

Chloroquine and COVID-19—A systems biology model uncovers the drug’s detrimental effect on autophagy and explains its failure

Orsolya Kapuy, Tamás Korcsmáros

Exploring the evolution of biochemical models at the network level

Tom Gebhardt, Vasundra Touré, [ ... ], Martin Scharm

Countering reproducibility issues in mathematical models with software engineering techniques: A case study using a one-dimensional mathematical model of the atrioventricular node

Christopher Schölzel, Valeria Blesius, [ ... ], Andreas Dominik

Antimicrobial activity of methanolic extracts of Vernonia cinerea against Xanthomonas oryzae and identification of their compounds using in silico techniques

Tushar Joshi, Satish Chandra Pandey, [ ... ], Subhash Chandra

Systems epidemiology and cancer: A review of the National Institutes of Health extramural grant portfolio 2013–2018

Marissa M. Shams-White, Rolando Barajas, [ ... ], Leah E. Mechanic

Executable biochemical space for specification and analysis of biochemical systems

Matej Troják, David Šafránek, Lukrécia Mertová, Luboš Brim

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