High-Throughput Sequencing of Arabidopsis microRNAs: Evidence for Frequent Birth and Death of MIRNA Genes

Noah Fahlgren; Miya D. Howell; Kristin D. Kasschau; Elisabeth J. Chapman; Christopher M. Sullivan; Jason S. Cumbie; Scott A. Givan; Theresa F. Law; Sarah R. Grant; Jeffery L. Dangl; James C. Carrington

doi:10.1371/journal.pone.0000219

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Open Access

Peer-reviewed

Research Article

High-Throughput Sequencing of Arabidopsis microRNAs: Evidence for Frequent Birth and Death of MIRNA Genes

Noah Fahlgren,

Affiliations Center for Genome Research and Biocomputing, Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America, Molecular and Cellular Biology Graduate Program, Oregon State University, Corvallis, Oregon, United States of America
⨯
Miya D. Howell,

Affiliation Center for Genome Research and Biocomputing, Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America
⨯
Kristin D. Kasschau,

Affiliation Center for Genome Research and Biocomputing, Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America
⨯
Elisabeth J. Chapman,

Affiliations Center for Genome Research and Biocomputing, Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America, Molecular and Cellular Biology Graduate Program, Oregon State University, Corvallis, Oregon, United States of America
⨯
Christopher M. Sullivan,

Affiliation Center for Genome Research and Biocomputing, Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America
⨯
Jason S. Cumbie,

Affiliation Center for Genome Research and Biocomputing, Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America
⨯
Scott A. Givan,

Affiliation Center for Genome Research and Biocomputing, Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America
⨯
Theresa F. Law,

Affiliation Department of Biology, University of North Carolina, Chapel Hill, North Carolina, United States of America
⨯
Sarah R. Grant,

Affiliation Department of Biology, University of North Carolina, Chapel Hill, North Carolina, United States of America
⨯
Jeffery L. Dangl,

Affiliation Department of Biology, University of North Carolina, Chapel Hill, North Carolina, United States of America
⨯
James C. Carrington

*To whom correspondence should be addressed. E-mail: carrington@cgrb.oregonstate.edu

Affiliation Center for Genome Research and Biocomputing, Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America
⨯

High-Throughput Sequencing of Arabidopsis microRNAs: Evidence for Frequent Birth and Death of MIRNA Genes

Noah Fahlgren,
Miya D. Howell,
Kristin D. Kasschau,
Elisabeth J. Chapman,
Christopher M. Sullivan,
Jason S. Cumbie,
Scott A. Givan,
Theresa F. Law,
Sarah R. Grant,
Jeffery L. Dangl

Published: February 14, 2007
https://doi.org/10.1371/journal.pone.0000219

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MicroRNAs
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Small interfering RNA
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Genetic loci
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Arabidopsis thaliana
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Sequence alignment
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Transcription factors
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RNA sequencing
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RNA folding
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