Hypoxia within solid tumors resulting from increased oxygen consumption and abnormal vascularization limits the effectiveness of cancer therapies. This image depicts the oxygen gradient of a hypoxic tumor growing in a vascularized bed interjacent of arterial and venous nodes. Here, the tumor has altered the vasculature, reducing venular oxygen transport. Using these models of vascular oxygen transport, Belcher et al explored how the tumor oxygenation potential of hemoglobin-based oxygen carriers (HBOCs) can differ between mice and humans. Specifically, they estimated which clinically measurable properties of the tumor may help translate HBOC facilitated tumor oxygenation from murine models to the clinic.
Image Credit: Donald Belcher, The Ohio State University
Education
Ten simple rules to increase computational skills among biologists with Code Clubs
PLOS Computational Biology: published August 27, 2020 | https://doi.org/10.1371/journal.pcbi.1008119
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Ten simple rules to power drug discovery with data science
PLOS Computational Biology: published August 27, 2020 | https://doi.org/10.1371/journal.pcbi.1008126
Research Articles
Multiplexing information flow through dynamic signalling systems
PLOS Computational Biology: published August 3, 2020 | https://doi.org/10.1371/journal.pcbi.1008076
Task-evoked activity quenches neural correlations and variability across cortical areas
PLOS Computational Biology: published August 3, 2020 | https://doi.org/10.1371/journal.pcbi.1007983
Combining hypoxia-activated prodrugs and radiotherapy in silico: Impact of treatment scheduling and the intra-tumoural oxygen landscape
PLOS Computational Biology: published August 3, 2020 | https://doi.org/10.1371/journal.pcbi.1008041
Optimising efficacy of antibiotics against systemic infection by varying dosage quantities and times
PLOS Computational Biology: published August 3, 2020 | https://doi.org/10.1371/journal.pcbi.1008037
Flexible neural connectivity under constraints on total connection strength
PLOS Computational Biology: published August 3, 2020 | https://doi.org/10.1371/journal.pcbi.1008080
Predicting precision grip grasp locations on three-dimensional objects
PLOS Computational Biology: published August 4, 2020 | https://doi.org/10.1371/journal.pcbi.1008081
Effect of magnitude and variability of energy of activation in multisite ultrasensitive biochemical processes
PLOS Computational Biology: published August 6, 2020 | https://doi.org/10.1371/journal.pcbi.1007966
A machine learning and network framework to discover new indications for small molecules
PLOS Computational Biology: published August 7, 2020 | https://doi.org/10.1371/journal.pcbi.1008098
Presynaptic inhibition rapidly stabilises recurrent excitation in the face of plasticity
PLOS Computational Biology: published August 7, 2020 | https://doi.org/10.1371/journal.pcbi.1008118
Achieving stable dynamics in neural circuits
PLOS Computational Biology: published August 7, 2020 | https://doi.org/10.1371/journal.pcbi.1007659
Reliable estimation of membrane curvature for cryo-electron tomography
PLOS Computational Biology: published August 10, 2020 | https://doi.org/10.1371/journal.pcbi.1007962
Facilitating the propagation of spiking activity in feedforward networks by including feedback
PLOS Computational Biology: published August 10, 2020 | https://doi.org/10.1371/journal.pcbi.1008033
In silico co-factor balance estimation using constraint-based modelling informs metabolic engineering in Escherichia coli
PLOS Computational Biology: published August 10, 2020 | https://doi.org/10.1371/journal.pcbi.1008125
Order matters: How covert value updating during sequential option sampling shapes economic preference
PLOS Computational Biology: published August 11, 2020 | https://doi.org/10.1371/journal.pcbi.1007920
Engineering recurrent neural networks from task-relevant manifolds and dynamics
PLOS Computational Biology: published August 12, 2020 | https://doi.org/10.1371/journal.pcbi.1008128
Genotype networks of 80 quantitative Arabidopsis thaliana phenotypes reveal phenotypic evolvability despite pervasive epistasis
PLOS Computational Biology: published August 13, 2020 | https://doi.org/10.1371/journal.pcbi.1008082
Inferring the ancestry of parents and grandparents from genetic data
PLOS Computational Biology: published August 14, 2020 | https://doi.org/10.1371/journal.pcbi.1008065
Information transmission from NFkB signaling dynamics to gene expression
PLOS Computational Biology: published August 14, 2020 | https://doi.org/10.1371/journal.pcbi.1008011
Machine Learning based histology phenotyping to investigate the epidemiologic and genetic basis of adipocyte morphology and cardiometabolic traits
PLOS Computational Biology: published August 14, 2020 | https://doi.org/10.1371/journal.pcbi.1008044
A computational model of induced pluripotent stem-cell derived cardiomyocytes for high throughput risk stratification of KCNQ1 genetic variants
PLOS Computational Biology: published August 14, 2020 | https://doi.org/10.1371/journal.pcbi.1008109
Drug-target binding quantitatively predicts optimal antibiotic dose levels in quinolones
PLOS Computational Biology: published August 14, 2020 | https://doi.org/10.1371/journal.pcbi.1008106
Vector genetics, insecticide resistance and gene drives: An agent-based modeling approach to evaluate malaria transmission and elimination
PLOS Computational Biology: published August 14, 2020 | https://doi.org/10.1371/journal.pcbi.1008121
In silico discovery and biological validation of ligands of FAD synthase, a promising new antimicrobial target
PLOS Computational Biology: published August 14, 2020 | https://doi.org/10.1371/journal.pcbi.1007898
Model-driven analysis of mutant fitness experiments improves genome-scale metabolic models of Zymomonas mobilis ZM4
PLOS Computational Biology: published August 17, 2020 | https://doi.org/10.1371/journal.pcbi.1008137
Deconvolving the contributions of cell-type heterogeneity on cortical gene expression
PLOS Computational Biology: published August 17, 2020 | https://doi.org/10.1371/journal.pcbi.1008120
Cardiac and renal function interactions in heart failure with reduced ejection fraction: A mathematical modeling analysis
PLOS Computational Biology: published August 17, 2020 | https://doi.org/10.1371/journal.pcbi.1008074
Real-time estimation of disease activity in emerging outbreaks using internet search information
PLOS Computational Biology: published August 17, 2020 | https://doi.org/10.1371/journal.pcbi.1008117
A Bayesian phylogenetic hidden Markov model for B cell receptor sequence analysis
PLOS Computational Biology: published August 17, 2020 | https://doi.org/10.1371/journal.pcbi.1008030
Modeling time-varying brain networks with a self-tuning optimized Kalman filter
PLOS Computational Biology: published August 17, 2020 | https://doi.org/10.1371/journal.pcbi.1007566
Mathematical modelling reveals cellular dynamics within tumour spheroids
PLOS Computational Biology: published August 18, 2020 | https://doi.org/10.1371/journal.pcbi.1007961
JBrowse Connect: A server API to connect JBrowse instances and users
PLOS Computational Biology: published August 18, 2020 | https://doi.org/10.1371/journal.pcbi.1007261
Modeling microbial cross-feeding at intermediate scale portrays community dynamics and species coexistence
PLOS Computational Biology: published August 18, 2020 | https://doi.org/10.1371/journal.pcbi.1008135
Mathematical model and tool to explore shorter multi-drug therapy options for active pulmonary tuberculosis
PLOS Computational Biology: published August 18, 2020 | https://doi.org/10.1371/journal.pcbi.1008107
Understanding multivariate brain activity: Evaluating the effect of voxelwise noise correlations on population codes in functional magnetic resonance imaging
PLOS Computational Biology: published August 18, 2020 | https://doi.org/10.1371/journal.pcbi.1008153
Visual perception of liquids: Insights from deep neural networks
PLOS Computational Biology: published August 19, 2020 | https://doi.org/10.1371/journal.pcbi.1008018
Dynamic estimation of auditory temporal response functions via state-space models with Gaussian mixture process noise
PLOS Computational Biology: published August 19, 2020 | https://doi.org/10.1371/journal.pcbi.1008172
Tumor vascular status controls oxygen delivery facilitated by infused polymerized hemoglobins with varying oxygen affinity
PLOS Computational Biology: published August 20, 2020 | https://doi.org/10.1371/journal.pcbi.1008157
Epithelial organ shape is generated by patterned actomyosin contractility and maintained by the extracellular matrix
PLOS Computational Biology: published August 20, 2020 | https://doi.org/10.1371/journal.pcbi.1008105
Early exposure to broadly neutralizing antibodies may trigger a dynamical switch from progressive disease to lasting control of SHIV infection
PLOS Computational Biology: published August 20, 2020 | https://doi.org/10.1371/journal.pcbi.1008064
Template-based mapping of dynamic motifs in tissue morphogenesis
PLOS Computational Biology: published August 21, 2020 | https://doi.org/10.1371/journal.pcbi.1008049
Managing disease outbreaks: The importance of vector mobility and spatially heterogeneous control
PLOS Computational Biology: published August 21, 2020 | https://doi.org/10.1371/journal.pcbi.1008136
Simulating flow induced migration in vascular remodelling
PLOS Computational Biology: published August 21, 2020 | https://doi.org/10.1371/journal.pcbi.1007874
A novel single-cell based method for breast cancer prognosis
PLOS Computational Biology: published August 24, 2020 | https://doi.org/10.1371/journal.pcbi.1008133
Cell signaling model for arterial mechanobiology
PLOS Computational Biology: published August 24, 2020 | https://doi.org/10.1371/journal.pcbi.1008161
Firing rate homeostasis counteracts changes in stability of recurrent neural networks caused by synapse loss in Alzheimer’s disease
PLOS Computational Biology: published August 25, 2020 | https://doi.org/10.1371/journal.pcbi.1007790
Partitioning stable and unstable expression level variation in cell populations: A theoretical framework and its application to the T cell receptor
PLOS Computational Biology: published August 25, 2020 | https://doi.org/10.1371/journal.pcbi.1007910
A steady-state model of microbial acclimation to substrate limitation
PLOS Computational Biology: published August 26, 2020 | https://doi.org/10.1371/journal.pcbi.1008140
Determining the interaction status and evolutionary fate of duplicated homomeric proteins
PLOS Computational Biology: published August 27, 2020 | https://doi.org/10.1371/journal.pcbi.1008145
Buildup and bistability in auditory streaming as an evidence accumulation process with saturation
PLOS Computational Biology: published August 27, 2020 | https://doi.org/10.1371/journal.pcbi.1008152
Computational estimates of mechanical constraints on cell migration through the extracellular matrix
PLOS Computational Biology: published August 27, 2020 | https://doi.org/10.1371/journal.pcbi.1008160
Modeling microbial metabolic trade-offs in a chemostat
PLOS Computational Biology: published August 28, 2020 | https://doi.org/10.1371/journal.pcbi.1008156
Computer-guided binding mode identification and affinity improvement of an LRR protein binder without structure determination
PLOS Computational Biology: published August 31, 2020 | https://doi.org/10.1371/journal.pcbi.1008150