Editorial
Ten Simple Rules for Writing a PLOS Ten Simple Rules Article
PLOS Computational Biology: published October 23, 2014 | https://doi.org/10.1371/journal.pcbi.1003858
Message from ISCB
Establishing and Managing a Global Student Network
PLOS Computational Biology: published October 30, 2014 | https://doi.org/10.1371/journal.pcbi.1003920
Perspective
A Reappraisal of How to Build Modular, Reusable Models of Biological Systems
PLOS Computational Biology: published October 2, 2014 | https://doi.org/10.1371/journal.pcbi.1003849
Research Articles
Cell Type Specific Alterations in Interchromosomal Networks across the Cell Cycle
PLOS Computational Biology: published October 2, 2014 | https://doi.org/10.1371/journal.pcbi.1003857
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Synaptic Size Dynamics as an Effectively Stochastic Process
PLOS Computational Biology: published October 2, 2014 | https://doi.org/10.1371/journal.pcbi.1003846
Evidence of Conformational Selection Driving the Formation of Ligand Binding Sites in Protein-Protein Interfaces
PLOS Computational Biology: published October 2, 2014 | https://doi.org/10.1371/journal.pcbi.1003872
Fast Synchronization of Ultradian Oscillators Controlled by Delta-Notch Signaling with Cis-Inhibition
PLOS Computational Biology: published October 2, 2014 | https://doi.org/10.1371/journal.pcbi.1003843
Resolving Anatomical and Functional Structure in Human Brain Organization: Identifying Mesoscale Organization in Weighted Network Representations
PLOS Computational Biology: published October 2, 2014 | https://doi.org/10.1371/journal.pcbi.1003712
Mesoscopic Model and Free Energy Landscape for Protein-DNA Binding Sites: Analysis of Cyanobacterial Promoters
PLOS Computational Biology: published October 2, 2014 | https://doi.org/10.1371/journal.pcbi.1003835
Memory Maintenance in Synapses with Calcium-Based Plasticity in the Presence of Background Activity
PLOS Computational Biology: published October 2, 2014 | https://doi.org/10.1371/journal.pcbi.1003834
Confidence Sharing: An Economic Strategy for Efficient Information Flows in Animal Groups
PLOS Computational Biology: published October 2, 2014 | https://doi.org/10.1371/journal.pcbi.1003862
Expression Profile of the Schistosoma japonicum Degradome Reveals Differential Protease Expression Patterns and Potential Anti-schistosomal Intervention Targets
PLOS Computational Biology: published October 2, 2014 | https://doi.org/10.1371/journal.pcbi.1003856
Natural Isotopic Signatures of Variations in Body Nitrogen Fluxes: A Compartmental Model Analysis
PLOS Computational Biology: published October 2, 2014 | https://doi.org/10.1371/journal.pcbi.1003865
Improving Contact Prediction along Three Dimensions
PLOS Computational Biology: published October 9, 2014 | https://doi.org/10.1371/journal.pcbi.1003847
A Model for Sigma Factor Competition in Bacterial Cells
PLOS Computational Biology: published October 9, 2014 | https://doi.org/10.1371/journal.pcbi.1003845
Hydrophobic Compounds Reshape Membrane Domains
PLOS Computational Biology: published October 9, 2014 | https://doi.org/10.1371/journal.pcbi.1003873
Exploring the miRNA Regulatory Network Using Evolutionary Correlations
PLOS Computational Biology: published October 9, 2014 | https://doi.org/10.1371/journal.pcbi.1003860
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Predicting the Functions and Specificity of Triterpenoid Synthases: A Mechanism-Based Multi-intermediate Docking Approach
PLOS Computational Biology: published October 9, 2014 | https://doi.org/10.1371/journal.pcbi.1003874
In Vivo Volume and Hemoglobin Dynamics of Human Red Blood Cells
PLOS Computational Biology: published October 9, 2014 | https://doi.org/10.1371/journal.pcbi.1003839
The SH2 Domain Regulates c-Abl Kinase Activation by a Cyclin-Like Mechanism and Remodulation of the Hinge Motion
PLOS Computational Biology: published October 9, 2014 | https://doi.org/10.1371/journal.pcbi.1003863
Linear Motif-Mediated Interactions Have Contributed to the Evolution of Modularity in Complex Protein Interaction Networks
PLOS Computational Biology: published October 9, 2014 | https://doi.org/10.1371/journal.pcbi.1003881
Tracking the Sleep Onset Process: An Empirical Model of Behavioral and Physiological Dynamics
PLOS Computational Biology: published October 2, 2014 | https://doi.org/10.1371/journal.pcbi.1003866
Complete Mapping of Substrate Translocation Highlights the Role of LeuT N-terminal Segment in Regulating Transport Cycle
PLOS Computational Biology: published October 9, 2014 | https://doi.org/10.1371/journal.pcbi.1003879
Reconstruction of the Gene Regulatory Network Involved in the Sonic Hedgehog Pathway with a Potential Role in Early Development of the Mouse Brain
PLOS Computational Biology: published October 9, 2014 | https://doi.org/10.1371/journal.pcbi.1003884
Depletion of the Chromatin Looping Proteins CTCF and Cohesin Causes Chromatin Compaction: Insight into Chromatin Folding by Polymer Modelling
PLOS Computational Biology: published October 9, 2014 | https://doi.org/10.1371/journal.pcbi.1003877
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Reactive Searching and Infotaxis in Odor Source Localization
PLOS Computational Biology: published October 16, 2014 | https://doi.org/10.1371/journal.pcbi.1003861
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Spectral Signatures of Reorganised Brain Networks in Disorders of Consciousness
PLOS Computational Biology: published October 16, 2014 | https://doi.org/10.1371/journal.pcbi.1003887
Canonical Correlation Analysis for Gene-Based Pleiotropy Discovery
PLOS Computational Biology: published October 16, 2014 | https://doi.org/10.1371/journal.pcbi.1003876
Likelihood-Based Gene Annotations for Gap Filling and Quality Assessment in Genome-Scale Metabolic Models
PLOS Computational Biology: published October 16, 2014 | https://doi.org/10.1371/journal.pcbi.1003882
Beyond Muscles Stiffness: Importance of State-Estimation to Account for Very Fast Motor Corrections
PLOS Computational Biology: published October 9, 2014 | https://doi.org/10.1371/journal.pcbi.1003869
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Linking Myometrial Physiology to Intrauterine Pressure; How Tissue-Level Contractions Create Uterine Contractions of Labor
PLOS Computational Biology: published October 16, 2014 | https://doi.org/10.1371/journal.pcbi.1003850
Chromatin Loops as Allosteric Modulators of Enhancer-Promoter Interactions
PLOS Computational Biology: published October 23, 2014 | https://doi.org/10.1371/journal.pcbi.1003867
Predicting Chemical Environments of Bacteria from Receptor Signaling
PLOS Computational Biology: published October 23, 2014 | https://doi.org/10.1371/journal.pcbi.1003870
Quantifying the Turnover of Transcriptional Subclasses of HIV-1-Infected Cells
PLOS Computational Biology: published October 23, 2014 | https://doi.org/10.1371/journal.pcbi.1003871
Regression Analysis of Combined Gene Expression Regulation in Acute Myeloid Leukemia
PLOS Computational Biology: published October 23, 2014 | https://doi.org/10.1371/journal.pcbi.1003908
Modeling Dynamics of Cell-to-Cell Variability in TRAIL-Induced Apoptosis Explains Fractional Killing and Predicts Reversible Resistance
PLOS Computational Biology: published October 23, 2014 | https://doi.org/10.1371/journal.pcbi.1003893
Rhythmic Manipulation of Objects with Complex Dynamics: Predictability over Chaos
PLOS Computational Biology: published October 23, 2014 | https://doi.org/10.1371/journal.pcbi.1003900
Lipid Clustering Correlates with Membrane Curvature as Revealed by Molecular Simulations of Complex Lipid Bilayers
PLOS Computational Biology: published October 23, 2014 | https://doi.org/10.1371/journal.pcbi.1003911
Investigating the Structure and Dynamics of the PIK3CA Wild-Type and H1047R Oncogenic Mutant
PLOS Computational Biology: published October 23, 2014 | https://doi.org/10.1371/journal.pcbi.1003895
A Taxonomy of Bacterial Microcompartment Loci Constructed by a Novel Scoring Method
PLOS Computational Biology: published October 23, 2014 | https://doi.org/10.1371/journal.pcbi.1003898
Linking Macroscopic with Microscopic Neuroanatomy Using Synthetic Neuronal Populations
PLOS Computational Biology: published October 23, 2014 | https://doi.org/10.1371/journal.pcbi.1003921
Glycolysis Is Governed by Growth Regime and Simple Enzyme Regulation in Adherent MDCK Cells
PLOS Computational Biology: published October 16, 2014 | https://doi.org/10.1371/journal.pcbi.1003885
Energy Landscape of All-Atom Protein-Protein Interactions Revealed by Multiscale Enhanced Sampling
PLOS Computational Biology: published October 23, 2014 | https://doi.org/10.1371/journal.pcbi.1003901
Ensembles of Spiking Neurons with Noise Support Optimal Probabilistic Inference in a Dynamically Changing Environment
PLOS Computational Biology: published October 23, 2014 | https://doi.org/10.1371/journal.pcbi.1003859
Phosphate Sink Containing Two-Component Signaling Systems as Tunable Threshold Devices
PLOS Computational Biology: published October 30, 2014 | https://doi.org/10.1371/journal.pcbi.1003890
Deducing the Kinetics of Protein Synthesis In Vivo from the Transition Rates Measured In Vitro
PLOS Computational Biology: published October 30, 2014 | https://doi.org/10.1371/journal.pcbi.1003909
Estimating Location without External Cues
PLOS Computational Biology: published October 30, 2014 | https://doi.org/10.1371/journal.pcbi.1003927
dcGOR: An R Package for Analysing Ontologies and Protein Domain Annotations
PLOS Computational Biology: published October 30, 2014 | https://doi.org/10.1371/journal.pcbi.1003929
The Route of HIV Escape from Immune Response Targeting Multiple Sites Is Determined by the Cost-Benefit Tradeoff of Escape Mutations
PLOS Computational Biology: published October 30, 2014 | https://doi.org/10.1371/journal.pcbi.1003878
Putting Theory to the Test: Which Regulatory Mechanisms Can Drive Realistic Growth of a Root?
PLOS Computational Biology: published October 30, 2014 | https://doi.org/10.1371/journal.pcbi.1003910
Robust Identification of Noncoding RNA from Transcriptomes Requires Phylogenetically-Informed Sampling
PLOS Computational Biology: published October 30, 2014 | https://doi.org/10.1371/journal.pcbi.1003907
Bistable Forespore Engulfment in Bacillus subtilis by a Zipper Mechanism in Absence of the Cell Wall
PLOS Computational Biology: published October 30, 2014 | https://doi.org/10.1371/journal.pcbi.1003912
Multiscale Approach to the Determination of the Photoactive Yellow Protein Signaling State Ensemble
PLOS Computational Biology: published October 30, 2014 | https://doi.org/10.1371/journal.pcbi.1003797
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FamSeq: A Variant Calling Program for Family-Based Sequencing Data Using Graphics Processing Units
PLOS Computational Biology: published October 30, 2014 | https://doi.org/10.1371/journal.pcbi.1003880
Corrections
Correction: Inferring on the Intentions of Others by Hierarchical Bayesian Learning
PLOS Computational Biology: published October 16, 2014 | https://doi.org/10.1371/journal.pcbi.1003952
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Correction: Environmental Statistics and Optimal Regulation
PLOS Computational Biology: published October 27, 2014 | https://doi.org/10.1371/journal.pcbi.1003978
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Correction: Systematic Evaluation of Methods for Integration of Transcriptomic Data into Constraint-Based Models of Metabolism
PLOS Computational Biology: published October 27, 2014 | https://doi.org/10.1371/journal.pcbi.1003989
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Correction: Beyond Muscles Stiffness: Importance of State-Estimation to Account for Very Fast Motor Corrections
PLOS Computational Biology: published October 30, 2014 | https://doi.org/10.1371/journal.pcbi.1003996