Implications of Ecological Niche Differentiation in Marine Bacteria for Microbial Management in Aquaculture to Prevent Bacterial Disease

Tom Defoirdt

PLOS Pathogens: published November 10, 2016 | https://doi.org/10.1371/journal.ppat.1005843

Chromatin Biology Impacts Adaptive Evolution of Filamentous Plant Pathogens

Michael F. Seidl, David E. Cook, Bart P. H. J. Thomma

PLOS Pathogens: published November 3, 2016 | https://doi.org/10.1371/journal.ppat.1005920

The Role of Reactive Oxygen Species in Modulating the Caenorhabditis elegans Immune Response

Katie C. McCallum, Danielle A. Garsin

PLOS Pathogens: published November 10, 2016 | https://doi.org/10.1371/journal.ppat.1005923

Fungal KATs/KDACs: A New Highway to Better Antifungal Drugs?

Karl Kuchler, Sabrina Jenull, Raju Shivarathri, Neeraj Chauhan

PLOS Pathogens: published November 10, 2016 | https://doi.org/10.1371/journal.ppat.1005938

Postharvest Disease of Banana Caused by Fusarium musae: A Public Health Concern?

David Triest, Marijke Hendrickx

PLOS Pathogens: published November 17, 2016 | https://doi.org/10.1371/journal.ppat.1005940

The Strange Lifestyle of Multipartite Viruses

Anne Sicard, Yannis Michalakis, Serafín Gutiérrez, Stéphane Blanc

PLOS Pathogens: published November 3, 2016 | https://doi.org/10.1371/journal.ppat.1005819

Microsporidia: Why Make Nucleotides if You Can Steal Them?

Paul Dean, Robert P. Hirt, T. Martin Embley

PLOS Pathogens: published November 17, 2016 | https://doi.org/10.1371/journal.ppat.1005870

Acute Malaria Induces PD1⁺CTLA4⁺ Effector T Cells with Cell-Extrinsic Suppressor Function

Maria Sophia Mackroth, Annemieke Abel, Christiane Steeg, Julian Schulze zur Wiesch, Thomas Jacobs

PLOS Pathogens: published November 1, 2016 | https://doi.org/10.1371/journal.ppat.1005909

Variant Exported Blood-Stage Proteins Encoded by Plasmodium Multigene Families Are Expressed in Liver Stages Where They Are Exported into the Parasitophorous Vacuole

Aurélie Fougère, Andrew P. Jackson, Dafni Paraskevi Bechtsi, Joanna A. M. Braks, Takeshi Annoura, Jannik Fonager, Roberta Spaccapelo, Jai Ramesar, Séverine Chevalley-Maurel, Onny Klop, Annelies M. A. van der Laan, Hans J. Tanke, Clemens H. M. Kocken, Erica M. Pasini, Shahid M. Khan, Ulrike Böhme, Christiaan van Ooij, Thomas D. Otto, Chris J. Janse, Blandine Franke-Fayard

PLOS Pathogens: published November 16, 2016 | https://doi.org/10.1371/journal.ppat.1005917

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1. Correction: Variant Exported Blood-Stage Proteins Encoded by Plasmodium Multigene Families Are Expressed in Liver Stages Where They Are Exported into the Parasitophorous Vacuole
2. Correction: Variant Exported Blood-Stage Proteins Encoded by Plasmodium Multigene Families Are Expressed in Liver Stages Where They Are Exported into the Parasitophorous Vacuole

Cathelicidin Insufficiency in Patients with Fatal Leptospirosis

Janet C. Lindow, Elsio A. Wunder Jr, Stephen J. Popper, Jin-na Min, Praveen Mannam, Anup Srivastava, Yi Yao, Kathryn P. Hacker, Khadir Raddassi, Patty J. Lee, Ruth R. Montgomery, Albert C. Shaw, Jose E. Hagan, Guilherme C. Araújo, Nivison Nery Jr, David A. Relman, Charles C. Kim, Mitermayer G. Reis, Albert I. Ko

PLOS Pathogens: published November 3, 2016 | https://doi.org/10.1371/journal.ppat.1005943

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1. Correction: Cathelicidin Insufficiency in Patients with Fatal Leptospirosis

The Kallikrein-Kinin System: A Novel Mediator of IL-17-Driven Anti-Candida Immunity in the Kidney

Kritika Ramani, Abhishek V. Garg, Chetan V. Jawale, Heather R. Conti, Natasha Whibley, Edwin K. Jackson, Sruti S. Shiva, William Horne, Jay K. Kolls, Sarah L. Gaffen, Partha S. Biswas

PLOS Pathogens: published November 4, 2016 | https://doi.org/10.1371/journal.ppat.1005952

Dissemination and Mechanism for the MCR-1 Colistin Resistance

Rongsui Gao, Yongfei Hu, Zhencui Li, Jian Sun, Qingjing Wang, Jingxia Lin, Huiyan Ye, Fei Liu, Swaminath Srinivas, Defeng Li, Baoli Zhu, Ya-Hong Liu, Guo-Bao Tian, Youjun Feng

PLOS Pathogens: published November 28, 2016 | https://doi.org/10.1371/journal.ppat.1005957

Tissue Degeneration following Loss of Schistosoma mansoni cbp1 Is Associated with Increased Stem Cell Proliferation and Parasite Death In Vivo

Julie N. R. Collins, James J. Collins III

PLOS Pathogens: published November 3, 2016 | https://doi.org/10.1371/journal.ppat.1005963

HIV Cell-to-Cell Spread Results in Earlier Onset of Viral Gene Expression by Multiple Infections per Cell

Mikaël Boullé, Thorsten G. Müller, Sabrina Dähling, Yashica Ganga, Laurelle Jackson, Deeqa Mahamed, Lance Oom, Gila Lustig, Richard A. Neher, Alex Sigal

PLOS Pathogens: published November 3, 2016 | https://doi.org/10.1371/journal.ppat.1005964

Activation of Bicyclic Nitro-drugs by a Novel Nitroreductase (NTR2) in Leishmania

Susan Wyllie, Adam J. Roberts, Suzanne Norval, Stephen Patterson, Bernardo J. Foth, Matthew Berriman, Kevin D. Read, Alan H. Fairlamb

PLOS Pathogens: published November 3, 2016 | https://doi.org/10.1371/journal.ppat.1005971

Evolution of Fitness Cost-Neutral Mutant PfCRT Conferring P. falciparum 4-Aminoquinoline Drug Resistance Is Accompanied by Altered Parasite Metabolism and Digestive Vacuole Physiology

Stanislaw J. Gabryszewski, Satish K. Dhingra, Jill M. Combrinck, Ian A. Lewis, Paul S. Callaghan, Matthew R. Hassett, Amila Siriwardana, Philipp P. Henrich, Andrew H. Lee, Nina F. Gnädig, Lise Musset, Manuel Llinás, Timothy J. Egan, Paul D. Roepe, David A. Fidock

PLOS Pathogens: published November 10, 2016 | https://doi.org/10.1371/journal.ppat.1005976

Ubiquitin-Dependent Modification of Skeletal Muscle by the Parasitic Nematode, Trichinella spiralis

Rhiannon R. White, Amy H. Ponsford, Michael P. Weekes, Rachel B. Rodrigues, David B. Ascher, Marco Mol, Murray E. Selkirk, Steven P. Gygi, Christopher M. Sanderson, Katerina Artavanis-Tsakonas

PLOS Pathogens: published November 21, 2016 | https://doi.org/10.1371/journal.ppat.1005977

Structure of a Spumaretrovirus Gag Central Domain Reveals an Ancient Retroviral Capsid

Neil J. Ball, Giuseppe Nicastro, Moumita Dutta, Dominic J. Pollard, David C. Goldstone, Marta Sanz-Ramos, Andres Ramos, Erik Müllers, Kristin Stirnnagel, Nicole Stanke, Dirk Lindemann, Jonathan P. Stoye, William R. Taylor, Peter B. Rosenthal, Ian A. Taylor

PLOS Pathogens: published November 9, 2016 | https://doi.org/10.1371/journal.ppat.1005981

Potent and Broad Inhibition of HIV-1 by a Peptide from the gp41 Heptad Repeat-2 Domain Conjugated to the CXCR4 Amino Terminus

George J. Leslie, Jianbin Wang, Max W. Richardson, Beth S. Haggarty, Kevin L. Hua, Jennifer Duong, Anthony J. Secreto, Andrea P. O. Jordon, Josephine Romano, Kritika E. Kumar, Joshua J. DeClercq, Philip D. Gregory, Carl H. June, Michael J. Root, James L. Riley, Michael C. Holmes, James A. Hoxie

PLOS Pathogens: published November 17, 2016 | https://doi.org/10.1371/journal.ppat.1005983

The KSHV K1 Protein Modulates AMPK Function to Enhance Cell Survival

Penny M. Anders, Zhigang Zhang, Prasana M. Bhende, Louise Giffin, Blossom Damania

PLOS Pathogens: published November 9, 2016 | https://doi.org/10.1371/journal.ppat.1005985

Mycobacterium abscessus-Induced Granuloma Formation Is Strictly Dependent on TNF Signaling and Neutrophil Trafficking

Audrey Bernut, Mai Nguyen-Chi, Iman Halloum, Jean-Louis Herrmann, Georges Lutfalla, Laurent Kremer

PLOS Pathogens: published November 2, 2016 | https://doi.org/10.1371/journal.ppat.1005986

Swimming Motility Mediates the Formation of Neutrophil Extracellular Traps Induced by Flagellated Pseudomonas aeruginosa

Madison Floyd, Matthew Winn, Christian Cullen, Payel Sil, Benoit Chassaing, Dae-goon Yoo, Andrew T. Gewirtz, Joanna B. Goldberg, Linda L. McCarter, Balázs Rada

PLOS Pathogens: published November 17, 2016 | https://doi.org/10.1371/journal.ppat.1005987

Saturation Mutagenesis of the HIV-1 Envelope CD4 Binding Loop Reveals Residues Controlling Distinct Trimer Conformations

Maria Duenas-Decamp, Li Jiang, Daniel Bolon, Paul R. Clapham

PLOS Pathogens: published November 7, 2016 | https://doi.org/10.1371/journal.ppat.1005988

Diversification in the HIV-1 Envelope Hyper-variable Domains V2, V4, and V5 and Higher Probability of Transmitted/Founder Envelope Glycosylation Favor the Development of Heterologous Neutralization Breadth

S. Abigail Smith, Samantha L. Burton, William Kilembe, Shabir Lakhi, Etienne Karita, Matt Price, Susan Allen, Eric Hunter, Cynthia A. Derdeyn

PLOS Pathogens: published November 16, 2016 | https://doi.org/10.1371/journal.ppat.1005989

Mechanistic Studies and Modeling Reveal the Origin of Differential Inhibition of Gag Polymorphic Viruses by HIV-1 Maturation Inhibitors

Zeyu Lin, Joseph Cantone, Hao Lu, Beata Nowicka-Sans, Tricia Protack, Tian Yuan, Hong Yang, Zheng Liu, Dieter Drexler, Alicia Regueiro-Ren, Nicholas A. Meanwell, Mark Cockett, Mark Krystal, Max Lataillade, Ira B. Dicker

PLOS Pathogens: published November 28, 2016 | https://doi.org/10.1371/journal.ppat.1005990

A Trematode Parasite Derived Growth Factor Binds and Exerts Influences on Host Immune Functions via Host Cytokine Receptor Complexes

Azad A. Sulaiman, Katarzyna Zolnierczyk, Ornampai Japa, Jonathan P. Owen, Ben C. Maddison, Richard D. Emes, Jane E. Hodgkinson, Kevin C. Gough, Robin J. Flynn

PLOS Pathogens: published November 2, 2016 | https://doi.org/10.1371/journal.ppat.1005991

Autographa californica Multiple Nucleopolyhedrovirus Ac34 Protein Retains Cellular Actin-Related Protein 2/3 Complex in the Nucleus by Subversion of CRM1-Dependent Nuclear Export

Jingfang Mu, Yongli Zhang, Yangyang Hu, Xue Hu, Yuan Zhou, He Zhao, Rongjuan Pei, Chunchen Wu, Jizheng Chen, Han Zhao, Kai Yang, Monique M. van Oers, Xinwen Chen, Yun Wang

PLOS Pathogens: published November 1, 2016 | https://doi.org/10.1371/journal.ppat.1005994

Subset- and Antigen-Specific Effects of Treg on CD8+ T Cell Responses in Chronic HIV Infection

Maria Nikolova, Aurélie Wiedemann, Maria Muhtarova, Daniela Achkova, Christine Lacabaratz, Yves Lévy

PLOS Pathogens: published November 9, 2016 | https://doi.org/10.1371/journal.ppat.1005995

A Mouse Model of Chronic West Nile Virus Disease

Jessica B. Graham, Jessica L. Swarts, Courtney Wilkins, Sunil Thomas, Richard Green, Aimee Sekine, Kathleen M. Voss, Renee C. Ireton, Michael Mooney, Gabrielle Choonoo, Darla R. Miller, Piper M. Treuting, Fernando Pardo Manuel de Villena, Martin T. Ferris, Shannon McWeeney, Michael Gale Jr., Jennifer M. Lund

PLOS Pathogens: published November 2, 2016 | https://doi.org/10.1371/journal.ppat.1005996

Modulation of the Immune Response by Nematode Secreted Acetylcholinesterase Revealed by Heterologous Expression in Trypanosoma musculi

Rachel Vaux, Corinna Schnoeller, Rita Berkachy, Luke B. Roberts, Jana Hagen, Kleoniki Gounaris, Murray E. Selkirk

PLOS Pathogens: published November 1, 2016 | https://doi.org/10.1371/journal.ppat.1005998

IFNAR1-Signalling Obstructs ICOS-mediated Humoral Immunity during Non-lethal Blood-Stage Plasmodium Infection

Ismail Sebina, Kylie R. James, Megan S. F. Soon, Lily G. Fogg, Shannon E. Best, Fabian de Labastida Rivera, Marcela Montes de Oca, Fiona H. Amante, Bryce S. Thomas, Lynette Beattie, Fernando Souza-Fonseca-Guimaraes, Mark J. Smyth, Paul J. Hertzog, Geoffrey R. Hill, Andreas Hutloff, Christian R. Engwerda, Ashraful Haque

PLOS Pathogens: published November 3, 2016 | https://doi.org/10.1371/journal.ppat.1005999

The Listeria monocytogenes PASTA Kinase PrkA and Its Substrate YvcK Are Required for Cell Wall Homeostasis, Metabolism, and Virulence

Daniel A. Pensinger, Kyle M. Boldon, Grischa Y. Chen, William J. B. Vincent, Kyle Sherman, Meng Xiong, Adam J. Schaenzer, Emily R. Forster, Jörn Coers, Rob Striker, John-Demian Sauer

PLOS Pathogens: published November 2, 2016 | https://doi.org/10.1371/journal.ppat.1006001

Zika (PRVABC59) Infection Is Associated with T cell Infiltration and Neurodegeneration in CNS of Immunocompetent Neonatal C57Bl/6 Mice

Mohanraj Manangeeswaran, Derek D. C. Ireland, Daniela Verthelyi

PLOS Pathogens: published November 17, 2016 | https://doi.org/10.1371/journal.ppat.1006004

Human Cytomegalovirus miR-UL148D Facilitates Latent Viral Infection by Targeting Host Cell Immediate Early Response Gene 5

Chaoyun Pan, Dihan Zhu, Yan Wang, Limin Li, Donghai Li, Fenyong Liu, Chen-Yu Zhang, Ke Zen

PLOS Pathogens: published November 8, 2016 | https://doi.org/10.1371/journal.ppat.1006007

The Epstein-Barr Virus Immunoevasins BCRF1 and BPLF1 Are Expressed by a Mechanism Independent of the Canonical Late Pre-initiation Complex

Jessica McKenzie, Francesc Lopez-Giraldez, Henri-Jacques Delecluse, Ann Walsh, Ayman El-Guindy

PLOS Pathogens: published November 17, 2016 | https://doi.org/10.1371/journal.ppat.1006008

Pyrimidine Salvage Enzymes Are Essential for De Novo Biosynthesis of Deoxypyrimidine Nucleotides in Trypanosoma brucei

Christopher Leija, Filipa Rijo-Ferreira, Lisa N. Kinch, Nick V. Grishin, Nicole Nischan, Jennifer J. Kohler, Zeping Hu, Margaret A. Phillips

PLOS Pathogens: published November 7, 2016 | https://doi.org/10.1371/journal.ppat.1006010

Cytoadhesion to gC1qR through Plasmodium falciparum Erythrocyte Membrane Protein 1 in Severe Malaria

Ariel Magallón-Tejada, Sónia Machevo, Pau Cisteró, Thomas Lavstsen, Pedro Aide, Mercedes Rubio, Alfons Jiménez, Louise Turner, Aida Valmaseda, Himanshu Gupta, Briegel De Las Salas, Inacio Mandomando, Christian W. Wang, Jens E. V. Petersen, Jose Muñoz, Joaquim Gascón, Eusebio Macete, Pedro L. Alonso, Chetan E. Chitnis, Quique Bassat, Alfredo Mayor

PLOS Pathogens: published November 11, 2016 | https://doi.org/10.1371/journal.ppat.1006011

Genome-Wide Estimation of the Spontaneous Mutation Rate of Human Adenovirus 5 by High-Fidelity Deep Sequencing

Jennifer Risso-Ballester, José M. Cuevas, Rafael Sanjuán

PLOS Pathogens: published November 8, 2016 | https://doi.org/10.1371/journal.ppat.1006013

Cross-Species Rhesus Cytomegalovirus Infection of Cynomolgus Macaques

Benjamin J. Burwitz, Daniel Malouli, Benjamin N. Bimber, Jason S. Reed, Abigail B. Ventura, Meaghan H. Hancock, Luke S. Uebelhoer, Amruta Bhusari, Katherine B. Hammond, Renee G. Espinosa Trethewy, Alex Klug, Alfred W. Legasse, Michael K. Axthelm, Jay A. Nelson, Byung S. Park, Daniel N. Streblow, Scott G. Hansen, Louis J. Picker, Klaus Früh, Jonah B. Sacha

PLOS Pathogens: published November 9, 2016 | https://doi.org/10.1371/journal.ppat.1006014

Isolation of a Defective Prion Mutant from Natural Scrapie

Ilaria Vanni, Sergio Migliore, Gian Mario Cosseddu, Michele Angelo Di Bari, Laura Pirisinu, Claudia D’Agostino, Geraldina Riccardi, Umberto Agrimi, Romolo Nonno

PLOS Pathogens: published November 23, 2016 | https://doi.org/10.1371/journal.ppat.1006016

Co-regulation of Iron Metabolism and Virulence Associated Functions by Iron and XibR, a Novel Iron Binding Transcription Factor, in the Plant Pathogen Xanthomonas

Sheo Shankar Pandey, Pradeep Kumar Patnana, Santosh Kumar Lomada, Archana Tomar, Subhadeep Chatterjee

PLOS Pathogens: published November 30, 2016 | https://doi.org/10.1371/journal.ppat.1006019

Merkel Cell Polyomavirus Small T Antigen Promotes Pro-Glycolytic Metabolic Perturbations Required for Transformation

Christian Berrios, Megha Padi, Mark A. Keibler, Donglim Esther Park, Vadim Molla, Jingwei Cheng, Soo Mi Lee, Gregory Stephanopoulos, John Quackenbush, James A. DeCaprio

PLOS Pathogens: published November 23, 2016 | https://doi.org/10.1371/journal.ppat.1006020

Blocking Synthesis of the Variant Surface Glycoprotein Coat in Trypanosoma brucei Leads to an Increase in Macrophage Phagocytosis Due to Reduced Clearance of Surface Coat Antibodies

Jackie L. Y. Cheung, Nadina V. Wand, Cher-Pheng Ooi, Sophie Ridewood, Richard J. Wheeler, Gloria Rudenko

PLOS Pathogens: published November 28, 2016 | https://doi.org/10.1371/journal.ppat.1006023

Dynamic in vivo mutations within the ica operon during persistence of Staphylococcus aureus in the airways of cystic fibrosis patients

Bianca Schwartbeck, Johannes Birtel, Janina Treffon, Lars Langhanki, Alexander Mellmann, Devika Kale, Janina Kahl, Nina Hirschhausen, Claudia Neumann, Jean C. Lee, Friedrich Götz, Holger Rohde, Hanae Henke, Peter Küster, Georg Peters, Barbara C. Kahl

PLOS Pathogens: published November 30, 2016 | https://doi.org/10.1371/journal.ppat.1006024

Chemokine Levels in the Penile Coronal Sulcus Correlate with HIV-1 Acquisition and Are Reduced by Male Circumcision in Rakai, Uganda

Jessica L. Prodger, Ronald H. Gray, Brett Shannon, Kamnoosh Shahabi, Xiangrong Kong, Kate Grabowski, Godfrey Kigozi, Fred Nalugoda, David Serwadda, Maria J. Wawer, Steven J. Reynolds, Cindy M. Liu, Aaron A. R. Tobian, Rupert Kaul

PLOS Pathogens: published November 29, 2016 | https://doi.org/10.1371/journal.ppat.1006025

Transcriptomic Analysis Implicates the p53 Signaling Pathway in the Establishment of HIV-1 Latency in Central Memory CD4 T Cells in an In Vitro Model

Cory H. White, Bastiaan Moesker, Nadejda Beliakova-Bethell, Laura J. Martins, Celsa A. Spina, David M. Margolis, Douglas D. Richman, Vicente Planelles, Alberto Bosque, Christopher H. Woelk

PLOS Pathogens: published November 29, 2016 | https://doi.org/10.1371/journal.ppat.1006026

K63-Linked Ubiquitination Targets Toxoplasma gondii for Endo-lysosomal Destruction in IFNγ-Stimulated Human Cells

Barbara Clough, Joseph D. Wright, Pedro M. Pereira, Elizabeth M. Hirst, Ashleigh C. Johnston, Ricardo Henriques, Eva-Maria Frickel

PLOS Pathogens: published November 22, 2016 | https://doi.org/10.1371/journal.ppat.1006027

Unravelling the Genome-Wide Contributions of Specific 2-Alkyl-4-Quinolones and PqsE to Quorum Sensing in Pseudomonas aeruginosa

Giordano Rampioni, Marilena Falcone, Stephan Heeb, Emanuela Frangipani, Matthew P. Fletcher, Jean-Frédéric Dubern, Paolo Visca, Livia Leoni, Miguel Cámara, Paul Williams

PLOS Pathogens: published November 16, 2016 | https://doi.org/10.1371/journal.ppat.1006029

T Cell Receptor Vβ Staining Identifies the Malignant Clone in Adult T cell Leukemia and Reveals Killing of Leukemia Cells by Autologous CD8⁺ T cells

Aileen G. Rowan, Aviva Witkover, Anat Melamed, Yuetsu Tanaka, Lucy B. M. Cook, Paul Fields, Graham P. Taylor, Charles R. M. Bangham

PLOS Pathogens: published November 28, 2016 | https://doi.org/10.1371/journal.ppat.1006030

miR-34 Modulates Innate Immunity and Ecdysone Signaling in Drosophila

Xiao-Peng Xiong, Krishna Kurthkoti, Kung-Yen Chang, Jian-Liang Li, Xingjie Ren, Jian-Quan Ni, Tariq M. Rana, Rui Zhou

PLOS Pathogens: published November 28, 2016 | https://doi.org/10.1371/journal.ppat.1006034

The Two-Component System ArlRS and Alterations in Metabolism Enable Staphylococcus aureus to Resist Calprotectin-Induced Manganese Starvation

Jana N. Radin, Jessica L. Kelliher, Paola K. Párraga Solórzano, Thomas E. Kehl-Fie

PLOS Pathogens: published November 30, 2016 | https://doi.org/10.1371/journal.ppat.1006040

Azidothymidine Sensitizes Primary Effusion Lymphoma Cells to Kaposi Sarcoma-Associated Herpesvirus-Specific CD4+ T Cell Control and Inhibits vIRF3 Function

Samantha J. Williamson, Samantha M. Nicol, Michael Stürzl, Shereen Sabbah, Andrew D. Hislop

PLOS Pathogens: published November 28, 2016 | https://doi.org/10.1371/journal.ppat.1006042