Fungal manipulation of hormone-regulated plant defense

Fungi have adapted to diverse habitats and ecological niches, including the complex plant systems. Success of the pathogenic or symbiotic fungi in colonizing the plant tissue depends on their ability to modulate the host defense signaling [1]. Strategies that impart such abilities in fungi include the use of effector proteins that directly disrupt phytohormone-based defense signaling pathways and/or the deployment of mimics of specific plant molecules to evade recognition and the subsequent host immune response [1, 2]. Recent exciting findings have provided insight into a novel strategy whereby the fungal pathogens utilize the endogenous phytohormone-mimics and/or relevant metabolic enzymes to suppress host immunity. These studies strongly suggest that fungal metabolites, in addition to effector proteins, can chemically shape and maintain distinct pathogenic or symbiotic interkingdom relationships between plants and fungi.


Introduction
Fungi have adapted to diverse habitats and ecological niches, including the complex plant systems. Success of the pathogenic or symbiotic fungi in colonizing the plant tissue depends on their ability to modulate the host defense signaling [1]. Strategies that impart such abilities in fungi include the use of effector proteins that directly disrupt phytohormone-based defense signaling pathways and/or the deployment of mimics of specific plant molecules to evade recognition and the subsequent host immune response [1,2]. Recent exciting findings have provided insight into a novel strategy whereby the fungal pathogens utilize the endogenous phytohormone-mimics and/or relevant metabolic enzymes to suppress host immunity. These studies strongly suggest that fungal metabolites, in addition to effector proteins, can chemically shape and maintain distinct pathogenic or symbiotic interkingdom relationships between plants and fungi.

Host-derived hormones as targets of fungal effectors
Fungal pathogens either establish a biotrophic relationship, in which the host plant is kept alive, or are necrotrophic and rampantly kill the invaded host cells to feed on the dead material. Hemibiotrophs begin their invasive lifestyle as biotrophs and, once established, switch to necrotrophy. During host invasion and colonization, fungal pathogens typically target phytohormones such as salicylic acid (SA), jasmonic acid (JA), or ethylene (ET), which are primarily involved in the host defense response, or modulate growth hormones like indole-3-acetic acid (IAA), abscisic acid (ABA), cytokinin (CK), or gibberellin (GA), which can also regulate immune signaling in plants [1]. For instance, the biotrophic fungal pathogen Ustilago maydis secretes the chorismate mutase (Cmu1) into the invaded host cells to interfere with the plant SA pathway during disease development in maize [3]. Chorismate is a common substrate/precursor that can be metabolized to amino acids such as phenylalanine or tyrosine via prephenate or utilized in the biosynthesis of SA via isochorismate [4]. Thus, the fungal Cmu1 likely indirectly blocks the synthesis of host SA by channeling the plant-derived chorismate to preferentially produce prephenate (and subsequently the amino acids) instead of isochorismate. Furthermore, U. maydis also produces a salicylate hydroxylase, Shy1, which degrades the hostderived SA and helps in biotrophic invasion [5]. Interestingly, SHY1 expression is activated in the presence of SA. Thus, it appears that U. maydis has a robust strategy to suppress SA-mediated plant immunity by blocking the synthesis of fresh SA while degrading the existing hormonal pool in the host. While SHY1 orthologs have been reported only in a few fungal genera, a1111111111 a1111111111 a1111111111 a1111111111 a1111111111 chorismate mutase is found in various plant-associated microbes, and its secretion is likely to be a common strategy for modulating the host defense response.
Another biotrophic fungus, Puccinia graminis f. sp. tritici, expresses a tryptophan 2-monooxygenase (Pgt-IaaM) specifically in the specialized invaginating structure called the haustorium, leading to excess accumulation of host-derived IAA during establishment of the pathogenic interaction in wheat [6].
Several necrotrophic fungi utilize various low-molecular-weight phytotoxic metabolites to influence the accumulation of defense-related plant hormones or employ their own phytohormone-mimics to suppress the plant immunity and/or aid in disease progression [7]. The necrotrophic phytopathogen Botrytis cinerea induces the accumulation of a conjugated form of plant IAA (IAA-Aspartate or IAA-Asp) to promote disease development in Arabidopsis thaliana. Preliminary studies indicate that the host-derived IAA-Asp supports in planta invasive growth by regulating the transcription of virulence genes in the fungal pathogen [8]. IAA-Asp is believed to represent a biologically inactive derivative. Thus, it has been hypothesized that accumulation of host IAA-Asp promotes disease by inducing the expression of specific virulence genes in the phytopathogen rather than via cross talk with other phytohormones or as a direct effect on the overall growth of the fungal pathogen. Interestingly, B. cinerea also secretes an exopolysaccharide as an elicitor of the host SA pathway to eventually suppress the JA-mediated signaling during invasion of tomato plants [9].
Intriguingly, Sclerotinia sclerotiorum has the ability to degrade host-derived SA during necrotrophic growth [10]. However, it remains to be established if such degradation contributes to fungal pathogenesis via modulation of plant immunity during invasive growth. The oomycete Hyaloperonospora arabidopsidis attenuates the phytohormone signaling pathways via the RxL44 effector protein, containing the highly conserved arginine (R), a random amino acid (x), leucine (L), and another arginine (R) sequence motif, that targets the host mediator complex subunit MED19a, which is a positive regulator of SA-triggered immunity in A. thaliana [11]. These findings clearly highlight the distinct strategies evolved by fungal and oomycete pathogens to target/utilize phytohormones to chemically disable plant immunity.

Fungal phytohormone-mimics as suppressors of plant immunity
A breakthrough discovery showed how the rice-blast fungus Magnaporthe oryzae produces and secretes an analog of a phytohormone to modulate host immunity [12]. The antibiotic biosynthesis monooxygenase (Abm) in M. oryzae converts intrinsically produced as well as hostderived JA into 12-hydroxyjasmonic acid (12OH-JA) during establishment of the blast disease in rice ( [12] ; Fig 1). Secreted fungal 12OH-JA blocks JA-mediated signaling (which typically involves perception of jasmonate by the plant F-box protein Coi1 and subsequent degradation of the target repressor Jaz9 [13]) to suppress the defense response during host penetration and the biotrophic growth thereafter. In the absence of the Abm function, M. oryzae accumulates methyl JA (MeJA), which strongly induces the defense response in rice plants (Fig 1). Interestingly, fungal 12OH-JA and Abm are secreted before and after host penetration, respectively. This suggests that the fungal hydroxylated JA acts as an effector metabolite and helps M. oryzae in preparing the host for successful entry, while the monooxygenase serves as an effector peptide that aids subsequent tissue colonization (Fig 1). Plants are known to produce 12OH-JA [14]; however, the corresponding enzyme involved in the synthesis of hydroxylated JA in plants has remained elusive thus far. Interestingly, orthologs of M. oryzae ABM have been found only in several symbiotic bacterial species, suggesting that the blast pathogen lineage acquired ABM likely via horizontal gene transfer from rhizosphere bacteria. Phytopathogens such as Fusarium oxysporum and Aspergillus flavus are known to produce oxilipins, including the plant JA mimics [15]. However, the absence of clear orthologs of M. oryzae ABM in these fungal pathogens makes it intriguing whether such fungal oxylipins are tailored differently, if at all, to evade or suppress the host immune response.
In addition to JA, M. oryzae also produces CK using the Cytokinin Synthesis 1 (CKS1) [16]. The inability to produce CK, specifically, impairs the in planta growth in the CKS1 mutant due to a precocious induction of the defense response in the invaded rice leaves. It was found that the fungus-derived CKs were likely involved in dampening the host immunity and in mobilizing host nutrients at the site of invasion [16]. M. oryzae has the ability to produce ABA, too. A recent study showed that the endogenously produced ABA helps M. oryzae in proper pathogenic development and host invasion, likely via the suppression of plant immunity [17].
These studies highlight the chemical arms race that has shaped the interaction between M. oryzae and rice [12,16] in conjunction with stage-specific fungal development and metabolism [18][19][20][21].
Just like the pathogenic counterparts, the symbiotic fungi, too, secrete effectors and/or host-mimic molecules to modulate the plant defense machinery to establish mutually beneficial associations [22]. The secreted effector MiSSP7 (Mycorrhiza-induced Small Secreted Protein 7) from Laccaria bicolor interacts with PtJaz6, which is a negative regulator of JA-induced gene expression in poplar trees [23]. Thus, MiSSP7 blocks JA-mediated defense signaling by preventing degradation of the PtJaz6 repressor in the host. It would be interesting to assess whether Abm could functionally replace MiSSP7 in L. bicolor and if 12OH-JA, the aforementioned metabolite from M. oryzae, targets a Jaz-like repressor of JA signaling in rice.
Similarly, 2 separate studies suggest that down-regulation of the ET pathway by the arbuscular mycorrhizal (AM) fungus is crucial for the establishment of symbiotic associations in the roots [24][25][26]. Indeed, the AM fungus Glomus intraradices suppresses ET signaling by secreting SP7, which directly targets the ET-responsive transcription factor ERF19 [27]. Intriguingly, the ectomycorrhizal truffle species Tuber melanosporum and T. borchii produce endogenous ET, which likely manipulates the hormonal signaling in the host and thus induces morphological changes in the roots [28]. It is possible that such ectomycorrhizaderived ET could also be involved in modulating the host immunity during establishment of the symbiotic interaction.
The emerging areas of metabogenomics would further help in revealing the secrets of the chemical communication between plant hosts and fungi. Overall, there is a great potential for new and/or as-yet-uncharacterized chemical molecules at the fungus-host interface, for improving the growth potential and inducing disease resistance in plants, and for agribiotech applications in precision agriculture.