Infectious viral shedding of SARS-CoV-2 Delta following vaccination: A longitudinal cohort study

• Miguel Garcia-Knight ,

  Contributed equally to this work with: Miguel Garcia-Knight, Khamal Anglin, Michel Tassetto

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Writing – original draft, Writing – review & editing

  Affiliation Department of Microbiology and Immunology, UCSF, California, United States of America

  https://orcid.org/0000-0001-9556-3719

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• Khamal Anglin ,

  Contributed equally to this work with: Miguel Garcia-Knight, Khamal Anglin, Michel Tassetto

  Roles Conceptualization, Data curation, Formal analysis, Methodology, Writing – original draft, Writing – review & editing

  Affiliations Department of Epidemiology and Biostatistics, University of California, San Francisco, California, United States of America, Institute for Global Health Sciences, University of California, San Francisco, California, United States of America

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• Michel Tassetto ,

  Contributed equally to this work with: Miguel Garcia-Knight, Khamal Anglin, Michel Tassetto

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Writing – original draft, Writing – review & editing

  Affiliation Department of Microbiology and Immunology, UCSF, California, United States of America

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• Scott Lu,

  Roles Data curation, Formal analysis, Methodology, Writing – original draft

  Affiliations Department of Epidemiology and Biostatistics, University of California, San Francisco, California, United States of America, Institute for Global Health Sciences, University of California, San Francisco, California, United States of America

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• Amethyst Zhang,

  Roles Data curation

  Affiliation Department of Microbiology and Immunology, UCSF, California, United States of America

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• Sarah A. Goldberg,

  Roles Data curation

  Affiliations Department of Epidemiology and Biostatistics, University of California, San Francisco, California, United States of America, Institute for Global Health Sciences, University of California, San Francisco, California, United States of America

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• Adam Catching,

  Roles Data curation, Visualization

  Affiliation Department of Microbiology and Immunology, UCSF, California, United States of America

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• Michelle C. Davidson,

  Roles Data curation, Project administration

  Affiliation School of Medicine, University of California, San Francisco, California, United States of America

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• Joshua R. Shak,

  Roles Data curation, Methodology

  Affiliations School of Medicine, University of California, San Francisco, California, United States of America, San Francisco VA Medical Center, San Francisco, California, United States of America

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• Mariela Romero,

  Roles Investigation

  Affiliations Department of Epidemiology and Biostatistics, University of California, San Francisco, California, United States of America, Institute for Global Health Sciences, University of California, San Francisco, California, United States of America

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• Jesus Pineda-Ramirez,

  Roles Investigation, Methodology

  Affiliations Department of Epidemiology and Biostatistics, University of California, San Francisco, California, United States of America, Institute for Global Health Sciences, University of California, San Francisco, California, United States of America

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• Ruth Diaz-Sanchez,

  Roles Investigation, Methodology

  Affiliations Department of Epidemiology and Biostatistics, University of California, San Francisco, California, United States of America, Institute for Global Health Sciences, University of California, San Francisco, California, United States of America

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• Paulina Rugart,

  Roles Investigation, Methodology

  Affiliations Department of Epidemiology and Biostatistics, University of California, San Francisco, California, United States of America, Institute for Global Health Sciences, University of California, San Francisco, California, United States of America

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• Kevin Donohue,

  Roles Investigation, Methodology

  Affiliation School of Medicine, University of California, San Francisco, California, United States of America

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• Jonathan Massachi,

  Roles Investigation, Methodology

  Affiliation School of Medicine, University of California, San Francisco, California, United States of America

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• Hannah M. Sans,

  Roles Investigation, Methodology

  Affiliation School of Medicine, University of California, San Francisco, California, United States of America

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• Manuella Djomaleu,

  Roles Investigation, Methodology

  Affiliation School of Medicine, University of California, San Francisco, California, United States of America

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• Sujata Mathur,

  Roles Investigation, Methodology

  Affiliations Department of Epidemiology and Biostatistics, University of California, San Francisco, California, United States of America, Institute for Global Health Sciences, University of California, San Francisco, California, United States of America

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• Venice Servellita,

  Roles Investigation, Methodology

  Affiliation Division of Infectious Diseases, UCSF, California, United States of America

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• David McIlwain,

  Roles Investigation, Methodology, Writing – review & editing

  Affiliation Department of Microbiology and Immunology, Stanford, California, United States of America

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• Brice Gaudiliere,

  Roles Investigation, Methodology

  Affiliation Department of Microbiology and Immunology, Stanford, California, United States of America

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• Jessica Chen,

  Roles Investigation, Methodology

  Affiliations Department of Epidemiology and Biostatistics, University of California, San Francisco, California, United States of America, Institute for Global Health Sciences, University of California, San Francisco, California, United States of America

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• Enrique O. Martinez,

  Roles Investigation, Methodology

  Affiliations Department of Epidemiology and Biostatistics, University of California, San Francisco, California, United States of America, Institute for Global Health Sciences, University of California, San Francisco, California, United States of America

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• Jacqueline M. Tavs,

  Roles Investigation, Methodology

  Affiliations Department of Epidemiology and Biostatistics, University of California, San Francisco, California, United States of America, Institute for Global Health Sciences, University of California, San Francisco, California, United States of America

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• Grace Bronstone,

  Roles Resources

  Affiliations Department of Epidemiology and Biostatistics, University of California, San Francisco, California, United States of America, Institute for Global Health Sciences, University of California, San Francisco, California, United States of America

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• Jacob Weiss,

  Roles Resources

  Affiliations Department of Epidemiology and Biostatistics, University of California, San Francisco, California, United States of America, Institute for Global Health Sciences, University of California, San Francisco, California, United States of America

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• John T. Watson,

  Roles Resources

  Affiliation Respiratory Viruses Branch, Division of Viral Diseases, CDC, Atlanta, Georgia, United States of America

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• Melissa Briggs-Hagen,

  Roles Project administration, Resources

  Affiliation Respiratory Viruses Branch, Division of Viral Diseases, CDC, Atlanta, Georgia, United States of America

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• Glen R. Abedi,

  Roles Resources

  Affiliation Respiratory Viruses Branch, Division of Viral Diseases, CDC, Atlanta, Georgia, United States of America

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• George W. Rutherford,

  Roles Resources

  Affiliations Department of Epidemiology and Biostatistics, University of California, San Francisco, California, United States of America, Institute for Global Health Sciences, University of California, San Francisco, California, United States of America

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• Steven G. Deeks,

  Roles Resources

  Affiliation Division of HIV, Infectious Disease, and Global Medicine, UCSF, California, United States of America

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• Charles Chiu,

  Roles Investigation, Resources

  Affiliation Division of Infectious Diseases, UCSF, California, United States of America

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• Sharon Saydah,

  Roles Project administration, Resources

  Affiliation Respiratory Viruses Branch, Division of Viral Diseases, CDC, Atlanta, Georgia, United States of America

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• Michael J. Peluso,

  Roles Resources

  Affiliation Division of HIV, Infectious Disease, and Global Medicine, UCSF, California, United States of America

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• Claire M. Midgley,

  Roles Conceptualization, Project administration

  Affiliation Respiratory Viruses Branch, Division of Viral Diseases, CDC, Atlanta, Georgia, United States of America

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• Jeffrey N. Martin,

  Roles Conceptualization, Project administration

  Affiliation Department of Epidemiology and Biostatistics, University of California, San Francisco, California, United States of America

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• Raul Andino ,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Project administration, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: raul.andino@ucsf.edu (RA); dan.kelly@ucsf.edu (JDK)

  Affiliation Department of Microbiology and Immunology, UCSF, California, United States of America

  https://orcid.org/0000-0001-5503-9349

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•  [ ... ],
• J. Daniel Kelly

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Project administration, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: raul.andino@ucsf.edu (RA); dan.kelly@ucsf.edu (JDK)

  Affiliations Department of Epidemiology and Biostatistics, University of California, San Francisco, California, United States of America, Institute for Global Health Sciences, University of California, San Francisco, California, United States of America, San Francisco VA Medical Center, San Francisco, California, United States of America, F.I. Proctor Foundation, University of California, San Francisco, California, United States of America

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