Within Host Evolution Selects for a Dominant Genotype of Mycobacterium tuberculosis while T Cells Increase Pathogen Genetic Diversity

• Richard Copin,

  Affiliation Division of Infectious Diseases, Department of Medicine, New York University School of Medicine, New York, NY, United States of America

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• Xueying Wang,

  Affiliation Department of Mathematics and Statistics, Washington State University, Pullman, WA, United States of America

  http://orcid.org/0000-0001-6445-8887

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• Eddie Louie,

  Affiliation Division of Infectious Diseases, Department of Medicine, New York University School of Medicine, New York, NY, United States of America

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• Vincent Escuyer,

  Affiliation Microbiology laboratory, Wadsworth Center, New York State Department of Health, Albany, NY, United States of America

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• Mireia Coscolla,

  Affiliations Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, Basel, Switzerland, University of Basel, Basel, Switzerland

  http://orcid.org/0000-0003-0752-0538

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• Sebastien Gagneux,

  Affiliations Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, Basel, Switzerland, University of Basel, Basel, Switzerland

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• Guy H. Palmer,

  Affiliation Paul G. Allen School for Global Animal Health, Washington State University, Pullman, WA, United States of America

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• Joel D. Ernst

  * E-mail: joel.ernst@med.nyu.edu

  Affiliations Division of Infectious Diseases, Department of Medicine, New York University School of Medicine, New York, NY, United States of America, Department of Microbiology, New York University School of Medicine, New York, NY, United States of America, Department of Pathology, New York University School of Medicine, New York, NY, United States of America

  http://orcid.org/0000-0001-9951-6207

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