About the Authors
- Paul J. McLaren
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Contributed equally to this work with: Paul J. McLaren, Cédric Coulonges
Affiliations School of Life Sciences, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland, Institute of Microbiology, University Hospital Center and University of Lausanne, Lausanne, Switzerland, Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America
- Cédric Coulonges
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Contributed equally to this work with: Paul J. McLaren, Cédric Coulonges
Affiliations Laboratoire Génomique, Bioinformatique, et Applications, EA4627, Chaire de Bioinformatique, Conservatoire National des Arts et Métiers, Paris, France, ANRS Genomic Group (French Agency for Research on AIDS and Hepatitis), Paris, France
- Stephan Ripke
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Affiliations Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America, Center for Human Genetic Research, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts, United States of America
- Leonard van den Berg
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Affiliation Department of Neurology, Rudolf Magnus Institute of Neuroscience, University Medical Center Utrecht, Utrecht, The Netherlands
- Susan Buchbinder
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Affiliation Bridge HIV, San Francisco Department of Public Health, San Francisco, California, United States of America
- Mary Carrington
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Affiliations Cancer and Inflammation Program, Laboratory of Experimental Immunology, SAIC Frederick, Inc., Frederick National Laboratory for Cancer Research, Frederick, Maryland, United States of America, Ragon Institute of MGH, MIT and Harvard, Boston, Massachusetts, United States of America
- Andrea Cossarizza
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Affiliation Department of Surgery, Medicine, Dentistry and Morphological Sciences University of Modena and Reggio Emilia School of Medicine, Modena, Italy
- Judith Dalmau
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Affiliation AIDS Research Institute IrsiCaixa, Institut d'Investigació en Ciències de la Salut Germans Trias i Pujol, Universitat Autònoma de Barcelona, Badalona, Spain
- Steven G. Deeks
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Affiliation Department of Medicine, University of California, San Francisco, California, United States of America
- Olivier Delaneau
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Affiliation Department of Statistics, University of Oxford, Oxford, United Kingdom
- Andrea De Luca
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Affiliations University Division of Infectious Diseases, Siena University Hospital, Siena, Italy, Institute of Clinical infectious Diseases, Università Cattolica del Sacro Cuore, Roma, Italy
- James J. Goedert
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Affiliation Infections and Immunoepidemiology Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, Maryland, United States of America
- David Haas
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Affiliation Vanderbilt University School of Medicine, Nashville, Tennessee, United States of America
- Joshua T. Herbeck
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Affiliation Department of Microbiology, University of Washington, Seattle, Washington, United States of America
- Sekar Kathiresan
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Affiliations Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America, Cardiovascular Research Center and Center for Human Genetic Research, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts, United States of America
- Gregory D. Kirk
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Affiliation Department of Epidemiology, Johns Hopkins University, Baltimore, Maryland, United States of America
- Olivier Lambotte
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Affiliations INSERM U1012, Bicêtre, France, University Paris-Sud, Bicêtre, France, AP-HP, Department of Internal Medicine and Infectious Diseases, Bicêtre Hospital, Bicêtre, France
- Ma Luo
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Affiliations Department of Medical Microbiology, University of Manitoba, Winnipeg, Manitoba, Canada, National Microbiology Laboratory, Winnipeg, Manitoba, Canada
- Simon Mallal
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Affiliation Institute for Immunology & Infectious Diseases, Murdoch University and Pathwest, Perth, Australia
- Daniëlle van Manen
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Current address: Crucell Holland BV, Leiden, The Netherlands.
Affiliation Department of Experimental Immunology, Sanquin Research, Landsteiner Laboratory, and Center for Infectious Diseases and Immunity Amsterdam (CINIMA) at the Academic Medical Center of the University of Amsterdam, Amsterdam, The Netherlands
- Javier Martinez-Picado
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Affiliations AIDS Research Institute IrsiCaixa, Institut d'Investigació en Ciències de la Salut Germans Trias i Pujol, Universitat Autònoma de Barcelona, Badalona, Spain, Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain
- Laurence Meyer
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Affiliations ANRS Genomic Group (French Agency for Research on AIDS and Hepatitis), Paris, France, Inserm, CESP U1018, University Paris-Sud, UMRS 1018, Faculté de Médecine Paris-Sud; AP-HP, Hopital Bicêtre, Epidemiology and Public Health Service, Le Kremlin Bicêtre, France
- José M. Miro
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Affiliation Infectious Diseases Service. Hospital Clinic – IDIBAPS, University of Barcelona, Barcelona, Spain
- James I. Mullins
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Affiliation Department of Microbiology, University of Washington, Seattle, Washington, United States of America
- Niels Obel
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Affiliation Department of Infectious Diseases, The National University Hospital, Rigshospitalet, Copenhagen, Denmark
- Stephen J. O'Brien
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Affiliation Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg, Russia
- Florencia Pereyra
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Affiliations Ragon Institute of MGH, MIT and Harvard, Boston, Massachusetts, United States of America, Division of Infectious Disease, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, United States of America
- Francis A. Plummer
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Affiliations Department of Medical Microbiology, University of Manitoba, Winnipeg, Manitoba, Canada, National Microbiology Laboratory, Winnipeg, Manitoba, Canada
- Guido Poli
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Affiliation Division of Immunology, Transplantation and Infectious Diseases, Vita-Salute San Raffaele University, School of Medicine & San Raffaele Scientific Institute, Milan, Italy
- Ying Qi
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Affiliation Cancer and Inflammation Program, Laboratory of Experimental Immunology, SAIC Frederick, Inc., Frederick National Laboratory for Cancer Research, Frederick, Maryland, United States of America
- Pierre Rucart
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Affiliations Laboratoire Génomique, Bioinformatique, et Applications, EA4627, Chaire de Bioinformatique, Conservatoire National des Arts et Métiers, Paris, France, ANRS Genomic Group (French Agency for Research on AIDS and Hepatitis), Paris, France
- Manj S. Sandhu
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Affiliations Genetic Epidemiology Group, Wellcome Trust Sanger Institute, Hinxton, United Kingdom, Non-Communicable Disease Research Group, Department of Public Health and Primary Care, University of Cambridge, Cambridge, United Kingdom
- Patrick R. Shea
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Affiliation Center for Human Genome Variation, Duke University School of Medicine, Durham, North Carolina, United States of America
- Hanneke Schuitemaker
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Current address: Crucell Holland BV, Leiden, The Netherlands.
Affiliation Department of Experimental Immunology, Sanquin Research, Landsteiner Laboratory, and Center for Infectious Diseases and Immunity Amsterdam (CINIMA) at the Academic Medical Center of the University of Amsterdam, Amsterdam, The Netherlands
- Ioannis Theodorou
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Affiliations ANRS Genomic Group (French Agency for Research on AIDS and Hepatitis), Paris, France, INSERM UMRS 945, Paris, France
- Fredrik Vannberg
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Affiliation School of Biology, Georgia Institute of Technology, Atlanta, Georgia, United States of America
- Jan Veldink
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Affiliation Department of Neurology, Rudolf Magnus Institute of Neuroscience, University Medical Center Utrecht, Utrecht, The Netherlands
- Bruce D. Walker
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Affiliations Ragon Institute of MGH, MIT and Harvard, Boston, Massachusetts, United States of America, Howard Hughes Medical Institute, Chevy Chase, Maryland, United States of America
- Amy Weintrob
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Affiliation Infectious Disease Clinical Research Program, Uniformed Services University of the Health Sciences, Bethesda, Maryland, United States of America
- Cheryl A. Winkler
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Affiliation Basic Research Laboratory, Molecular Genetic Epidemiology Section, Center for Cancer Research, NCI, SAIC-Frederick, Inc., Frederick National Laboratory, Frederick, Maryland, United States of America
- Steven Wolinsky
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Affiliation Division of Infectious Diseases, The Feinberg School of Medicine, Northwestern University, Chicago, Illinois, United States of America
- Amalio Telenti
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Affiliation Institute of Microbiology, University Hospital Center and University of Lausanne, Lausanne, Switzerland
- David B. Goldstein
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Affiliation Center for Human Genome Variation, Duke University School of Medicine, Durham, North Carolina, United States of America
- Paul I. W. de Bakker
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Affiliations Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America, Division of Genetics Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, United States of America, Department of Medical Genetics, University Medical Center Utrecht, Utrecht, The Netherlands, Department of Epidemiology, University Medical Center Utrecht, Utrecht, The Netherlands
- Jean-François Zagury
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Affiliations Laboratoire Génomique, Bioinformatique, et Applications, EA4627, Chaire de Bioinformatique, Conservatoire National des Arts et Métiers, Paris, France, ANRS Genomic Group (French Agency for Research on AIDS and Hepatitis), Paris, France
- Jacques Fellay
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* E-mail: jacques.fellay@epfl.ch
Affiliations School of Life Sciences, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland, Institute of Microbiology, University Hospital Center and University of Lausanne, Lausanne, Switzerland
Competing Interests
The authors have declared that no competing interests exist.
Author Contributions
Conceived and designed the experiments: PJM MC AT DBG PIWdB JFZ JF. Performed the experiments: PJM CC SR. Analyzed the data: PJM CC SR OD PR. Contributed reagents/materials/analysis tools: LvdB SB MC AC JD SGD ADL JJG DH JTH SK GDK OL ML SM DvM JMP LM JMM JIM NO SJO FP FAP GP YQ MSS PRS HS IT FV JV BDW AW CAW SW AT DBG JFZ JF. Wrote the paper: PJM CC JFZ JF.