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Systems biology

Executable biochemical space for specification and analysis of biochemical systems

Matej Troják, David Šafránek, Lukrécia Mertová, Luboš Brim

From systems to biology: A computational analysis of the research articles on systems biology from 1992 to 2013

Yawen Zou, Manfred D. Laubichler

BioVis Explorer: A visual guide for biological data visualization techniques

Andreas Kerren, Kostiantyn Kucher, Yuan-Fang Li, Falk Schreiber

A parallel metaheuristic for large mixed-integer dynamic optimization problems, with applications in computational biology

David R. Penas, David Henriques, [ ... ], Julio R. Banga

Formal reasoning about systems biology using theorem proving

Adnan Rashid, Osman Hasan, Umair Siddique, Sofiène Tahar

An algorithm for constructing the skeleton graph of degenerate systems of linear inequalities

José Manuel Méndez Martínez, Jesús Urías

Driving the Model to Its Limit: Profile Likelihood Based Model Reduction

Tim Maiwald, Helge Hass, [ ... ], Jens Timmer

Experimental Design for Stochastic Models of Nonlinear Signaling Pathways Using an Interval-Wise Linear Noise Approximation and State Estimation

Christoph Zimmer

Statistical Techniques Complement UML When Developing Domain Models of Complex Dynamical Biosystems

Richard A. Williams, Jon Timmis, Eva E. Qwarnstrom

A Hybrid of the Chemical Master Equation and the Gillespie Algorithm for Efficient Stochastic Simulations of Sub-Networks

Jaroslav Albert

ZBIT Bioinformatics Toolbox: A Web-Platform for Systems Biology and Expression Data Analysis

Michael Römer, Johannes Eichner, [ ... ], Andreas Zell

Novel Neuroprotective Multicomponent Therapy for Amyotrophic Lateral Sclerosis Designed by Networked Systems

Mireia Herrando-Grabulosa, Roger Mulet, [ ... ], Caty Casas

A Sparse Reconstruction Approach for Identifying Gene Regulatory Networks Using Steady-State Experiment Data

Wanhong Zhang, Tong Zhou

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