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Ontologies

ProKinO: An Ontology for Integrative Analysis of Protein Kinases in Cancer

Gurinder Gosal, Krys J. Kochut, Natarajan Kannan

published 14 Dec 2011

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The Chemical Information Ontology: Provenance and Disambiguation for Chemical Data on the Biological Semantic Web

Janna Hastings, Leonid Chepelev, Egon Willighagen, Nico Adams, Christoph Steinbeck, Michel Dumontier

published 03 Oct 2011

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Robustness Analysis and Behavior Discrimination in Enzymatic Reaction Networks

Alexandre Donzé, Eric Fanchon, Lucie Martine Gattepaille, Oded Maler, Philippe Tracqui

published 27 Sep 2011

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Interoperability between Biomedical Ontologies through Relation Expansion, Upper-Level Ontologies and Automatic Reasoning

Robert Hoehndorf, Michel Dumontier, Anika Oellrich, Dietrich Rebholz-Schuhmann, Paul N. Schofield, Georgios V. Gkoutos

published 18 Jul 2011

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Dietary Protein Restriction during F₀ Pregnancy in Rats Induces Transgenerational Changes in the Hepatic Transcriptome in Female Offspring

Samuel P. Hoile, Karen A. Lillycrop, Nicola A. Thomas, Mark A. Hanson, Graham C. Burdge

published 07 Jul 2011

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Top-Level Categories of Constitutively Organized Material Entities - Suggestions for a Formal Top-Level Ontology

Lars Vogt, Peter Grobe, Björn Quast, Thomas Bartolomaeus

published 21 Apr 2011

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Named Entity Recognition for Bacterial Type IV Secretion Systems

Sophia Ananiadou, Dan Sullivan, William Black, Gina-Anne Levow, Joseph J. Gillespie, Chunhong Mao, Sampo Pyysalo, BalaKrishna Kolluru, Junichi Tsujii, Bruno Sobral

published 29 Mar 2011

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Genes and Gene Ontologies Common to Airflow Obstruction and Emphysema in the Lungs of Patients with COPD

Santiyagu M. Savarimuthu Francis, Jill E. Larsen, Sandra J. Pavey, Edwina E. Duhig, Belinda E. Clarke, Rayleen V. Bowman, Nick K. Hayward, Kwun M. Fong, Ian A. Yang

published 15 Mar 2011

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Do Two Machine-Learning Based Prognostic Signatures for Breast Cancer Capture the Same Biological Processes?

Yotam Drier, Eytan Domany

published 14 Mar 2011

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A Gross Anatomy Ontology for Hymenoptera

Matthew J. Yoder, István Mikó, Katja C. Seltmann, Matthew A. Bertone, Andrew R. Deans

published 29 Dec 2010

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The Illogicality of Stock-Brokers: Psychological Experiments on the Effects of Prior Knowledge and Belief Biases on Logical Reasoning in Stock Trading

Markus Knauff, Claudia Budeck, Ann G. Wolf, Kai Hamburger

published 18 Oct 2010

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Ontology-Based Meta-Analysis of Global Collections of High-Throughput Public Data

Ilya Kupershmidt, Qiaojuan Jane Su, Anoop Grewal, Suman Sundaresh, Inbal Halperin, James Flynn, Mamatha Shekar, Helen Wang, Jenny Park, Wenwu Cui, Gregory D. Wall, Robert Wisotzkey, Satnam Alag, Saeid Akhtari, Mostafa Ronaghi

published 29 Sep 2010

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Adding a Little Reality to Building Ontologies for Biology

Phillip Lord, Robert Stevens

published 03 Sep 2010

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