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Genomics statistics

Reevaluating Assembly Evaluations with Feature Response Curves: GAGE and Assemblathons

Francesco Vezzi, Giuseppe Narzisi, Bud Mishra

When Does Choice of Accuracy Measure Alter Imputation Accuracy Assessments?

Shelina Ramnarine, Juan Zhang, [ ... ], Nancy L. Saccone

QuorUM: An Error Corrector for Illumina Reads

Guillaume Marçais, James A. Yorke, Aleksey Zimin

Fine-Scale Patterns of Population Stratification Confound Rare Variant Association Tests

Timothy D. O’Connor, Adam Kiezun, [ ... ], Joshua M. Akey

ODoSE: A Webserver for Genome-Wide Calculation of Adaptive Divergence in Prokaryotes

Michiel Vos, Tim A. H. te Beek, [ ... ], Mark W. J. van Passel

PSCC: Sensitive and Reliable Population-Scale Copy Number Variation Detection Method Based on Low Coverage Sequencing

Xuchao Li, Shengpei Chen, [ ... ], Xiuqing Zhang

Contig-Layout-Authenticator (CLA): A Combinatorial Approach to Ordering and Scaffolding of Bacterial Contigs for Comparative Genomics and Molecular Epidemiology

Sabiha Shaik, Narender Kumar, [ ... ], Niyaz Ahmed

Statistical power and utility of meta-analysis methods for cross-phenotype genome-wide association studies

Zhaozhong Zhu, Verneri Anttila, Jordan W. Smoller, Phil H. Lee

Inferring Genome-Wide Recombination Landscapes from Advanced Intercross Lines: Application to Yeast Crosses

Christopher J. R. Illingworth, Leopold Parts, [ ... ], Ville Mustonen

A Latent Variable Partial Least Squares Path Modeling Approach to Regional Association and Polygenic Effect with Applications to a Human Obesity Study

Fuzhong Xue, Shengxu Li, [ ... ], Jing Hua Zhao

A Comparison of Aggregate P-Value Methods and Multivariate Statistics for Self-Contained Tests of Metabolic Pathway Analysis

Matthew W. Mitchell

Is useful research data usually shared? An investigation of genome-wide association study summary statistics

Mike Thelwall, Marcus Munafò, [ ... ], Kayvan Kousha

Detecting selection using extended haplotype homozygosity (EHH)-based statistics in unphased or unpolarized data

Alexander Klassmann, Mathieu Gautier

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