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Sensitivity analysis revealing the effect of modulating ionic mechanisms on calcium dynamics in simulated human heart failure

  • Maria T. Mora,

    Roles Data curation, Formal analysis, Investigation, Methodology, Software, Visualization, Writing – original draft, Writing – review & editing

    Affiliation Centro de Investigación e Innovación en Bioingeniería, Universitat Politècnica de València, Valencia, Spain

  • Jose M. Ferrero,

    Roles Conceptualization, Project administration, Supervision, Writing – review & editing

    Affiliation Centro de Investigación e Innovación en Bioingeniería, Universitat Politècnica de València, Valencia, Spain

  • Lucia Romero,

    Roles Methodology, Writing – review & editing

    Affiliation Centro de Investigación e Innovación en Bioingeniería, Universitat Politècnica de València, Valencia, Spain

  • Beatriz Trenor

    Roles Conceptualization, Funding acquisition, Methodology, Project administration, Supervision, Visualization, Writing – original draft, Writing – review & editing

    btrenor@eln.upv.es

    Affiliation Centro de Investigación e Innovación en Bioingeniería, Universitat Politècnica de València, Valencia, Spain

Sensitivity analysis revealing the effect of modulating ionic mechanisms on calcium dynamics in simulated human heart failure

  • Maria T. Mora, 
  • Jose M. Ferrero, 
  • Lucia Romero, 
  • Beatriz Trenor
PLOS
x

Abstract

Abnormal intracellular Ca2+ handling is the major contributor to the depressed cardiac contractility observed in heart failure. The electrophysiological remodeling associated with this pathology alters both the action potential and the Ca2+ dynamics, leading to a defective excitation-contraction coupling that ends in mechanical dysfunction. The importance of maintaining a correct intracellular Ca2+ concentration requires a better understanding of its regulation by ionic mechanisms. To study the electrical activity and ionic homeostasis of failing myocytes, a modified version of the O’Hara et al. human action potential model was used, including electrophysiological remodeling. The impact of the main ionic transport mechanisms was analyzed using single-parameter sensitivity analyses, the first of which explored the modulation of electrophysiological characteristics related to Ca2+ exerted by the remodeled parameters. The second sensitivity analysis compared the potential consequences of modulating individual channel conductivities, as one of the main effects of potential drugs, on Ca2+ dynamic properties under both normal conditions and in heart failure. The first analysis revealed the important contribution of the sarcoplasmic reticulum Ca2+-ATPase (SERCA) dysfunction to the altered Ca2+ homeostasis, with the Na+/Ca2+ exchanger (NCX) and other Ca2+ cycling proteins also playing a significant role. Our results highlight the importance of improving the SR uptake function to increase Ca2+ content and restore Ca2+ homeostasis and contractility. The second sensitivity analysis highlights the different response of the failing myocyte versus the healthy myocyte to potential pharmacological actions on single channels. The result of modifying the conductances of the remodeled proteins such as SERCA and NCX in heart failure has less impact on Ca2+ modulation. These differences should be taken into account when designing drug therapies.

Introduction

Heart failure (HF), characterized by contractile dysfunction and arrhythmogenesis, is the final stage of many cardiovascular diseases. To understand the mechanisms that lead to these pathological conditions, a large body of research has focused on the electrophysiological changes in failing myocytes. At the cellular level, the hallmarks of HF are a prolongation of the action potential and alterations in ionic concentrations, such as intracellular Na+ ([Na+]i) and Ca2+ ([Ca2+]i), as a consequence of ion channel remodeling [14].

As intracellular Ca2+ is the main regulator of the cardiac excitation-contraction coupling, mishandling of Ca2+ is directly related to the mechanical dysfunction and certain arrhythmias associated with HF. Specifically, the alterations in Ca2+ dynamics are a decrease of the systolic peak, an increase of the diastolic level, a prolongation of the Ca2+ transient (CaT), and a reduced sarcoplasmic reticulum (SR) Ca2+ load [57], so that it is clear that restoring normal Ca2+ cycling in HF could have beneficial therapeutic effects.

The study of the reduced mechanical performance in failing human myocytes has shown a strong correlation with depressed intracellular Ca2+ transients and it has also been related to altered mRNA levels of Ca2+-handling proteins [8]. Changes in the expression or activity of Ca2+ transport proteins in failing human ventricular myocytes, reviewed elsewhere [913], highlight the significant alteration in proteins involved in Ca2+ removal from the cytosol, such as the sarcoplasmic reticulum Ca2+-ATPase (SERCA) and the Na+/Ca2+ exchanger (NCX), and the existence of an important impaired diastolic Ca2+ release from the SR. On this basis, therapies are now being designed to restore Ca2+ homeostasis by targeting Ca2+-handling proteins [14,15]. Most of these consist of improving SR function by increasing SR Ca2+ uptake or preventing SR Ca2+ leak, although they have not been systematically explored. There are also other ionic transporters involved in the electrophysiology of the heart that have not been analyzed from this point of view.

Pharmacological agents interacting with specific ionic channels can improve the electrical and mechanical properties of the heart. In fact, many studies have focused on the pharmacological effects on the action potential, but less attention has been paid to the effects on Ca2+ dynamics. The need for a better understanding of the mechanisms in this complex electrophysiological system requires a systematic methodology. Mathematical models and computational simulations can help identify and explain interactions and effects that cannot be easily understood experimentally. In cardiac electrophysiology, studies using this approach have provided new findings on the ionic basis of arrhythmogenic processes [16,17], while electromechanical models have highlighted the need for a balanced Ca2+ handling mechanism to prevent cardiac dysfunction, since treatments targeting increased contractility alone are not sufficient [18].

The aim of this study is thus to analyze in silico the alterations of Ca2+ handling in failing human myocytes and to identify possible pharmacological targets that could restore them. The first sensitivity analysis, performed in a HF model, elucidates the main mechanisms responsible for the alterations of Ca2+ homeostasis in such pathological conditions. Secondly, the comparison of two sensitivity analyses, in normal and failing conditions, reveals differences between both models in the effect of ionic parameters on Ca2+ handling. These findings suggest that pharmacological treatments might not produce the same results in HF as in healthy myocytes, meaning that it may be necessary to adapt the treatment to the specific pathological situation.

Methods

Human action potential model

The most recent and complete human ventricular action potential (AP) model is that of O’Hara et al. (ORd) [19], which provides a detailed description of Ca2+ handling, allowing the analysis of electrophysiological characteristics related to Ca2+. A modified version of this model was used to simulate the electrophysiological activity at the cellular level. The reason for not using the original ORd formulation is that in a 1D multicellular fiber, conduction velocity is low, especially under pathological situations when sodium current is reduced. Thus, the original fast sodium current (INa) formulation was modified by shifting its steady state activation (mss) and inactivation gates (hss and jss), as depicted in Fig 1. Passini et al. [20] had already proposed an optimized formulation for the sodium steady-state inactivation response, which consisted basically of matching ten Tusscher et al. [21] curves by shifting the half potential and changing the slope. The mss was left-shifted, as suggested by Passini et al. [20], but we also modified the slope of the curve. The conductance (GNa) was reduced by 60% to maintain (dV/dt)max in the range of 260 V/s.

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Fig 1. Steady state activation (Left) and inactivation (Right) gates of the fast Na+ current in the different models.

Original O’Hara et al. model (ORd), ten Tusscher et al. model (TT), and the modified ORd model (ORdmm).

https://doi.org/10.1371/journal.pone.0187739.g001

Since it has been reported in voltage-clamp experiments [22] that the late sodium current (INaL) is 0.07% of the value of INa peak at -30 mV after 200 ms, its conductance value (GNaL) was doubled to satisfy this condition. From now on, we will refer to the ORd modified model as the ORdmm.

Simulation protocol

All the simulations in this study were carried out in endocardial cells paced at 1 Hz. Quantitative indicators characterizing Ca2+ dynamics were measured for the last of 1000 beats, after steady-state was reached (Figs 1 and 2 of the S1 File show the last traces of AP and CaT in different simulations). The measured electrophysiological (EP) indicators were: systolic peak and diastolic value of [Ca2+]i, Ca2+ transient (CaT) duration measured as the time from upstroke to 30% and 80% recovery (CaTD30 and CaTD80), rise time of CaT (t10-90) defined as the time from 10% CaT (close to the baseline) to 90% CaT (close to peak) (see Fig 2 for details). Other important concentrations are systolic and diastolic values of Ca2+ reached in the subspace ([Ca2+]ss), representing the space near the T-tubules, and in the sarcoplasmic reticulum (SR), which is divided into the junctional (JSR) and network SR (NSR). AP duration (APD) was measured as the time from the upstroke to 30% and 90% repolarization (APD30 and APD90), as well as the [Na+]i peak.

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Fig 2. Time course of a steady state Ca2+ transient (CaT) and its electrophysiological characteristics.

Systolic [Ca2+]i and diastolic [Ca2+]i, CaT duration measured as the time from upstroke to 30% and 80% recovery (CaTD30 and CaTD80) and 10% to 90% CaT rise time (t10-90).

https://doi.org/10.1371/journal.pone.0187739.g002

Sensitivity analysis of the HF model

An AP model for the failing myocyte was formulated on the basis of experimental observations to reproduce the main EP characteristics under these conditions in failing human ventricular myocytes. Table 1 shows the changes performed in the ORdmm model, following Gomez et al. changes performed in the original ORd model [23]. This electrical remodeling consists of applying a scale factor to maximal conductances of the INaL, the transient outward K+ current (Ito), and the inward rectifier K+ current (IK1), to the time constant of inactivation of the INaLhL), to the maximal fluxes of the Na+/ K+ ATPase current (INaK), the Na+/Ca2+ exchange current (INCX), the Ca2+ uptake via SERCA pump (JSERCA), and the SR Ca2+ leak (Jleak), to the fraction of active binding sites of the Ca+2 calmodulin-dependent protein kinase II (CaMKa), and to the SR Ca2+-dependence of the steady-state activation of ryanodine receptor (RyR) release (Krel,Ca). Further details of these variables can be found in the Supplementary Material (S1 File).

A sensitivity analysis was performed to study the variability of HF remodeling. The ionic parameters altered in HF were varied one at a time with a new scale factor to assess the impact of their variability on Ca2+ dynamics. The baseline model was the ORdmm model with the EP remodeling described in Table 1 (“HF basic”). Different degrees of HF were evaluated: without HF (“no change”), intermediate HF (“50% HF”) and severe HF (“150% HF”), and applied to one parameter at a time in each simulation, as detailed below. First, each remodeled variable was individually modified to its normal value as in the ORdmm model, i.e. without HF, while the others were fixed to the values of the basic HF model. This gave rise to 10 different “no change” models, each one for a specific parameter. The same parameters were similarly varied one at a time to a value representing ±50% of that observed in the HF basic remodeling. In this way we obtained 10 different basic HF models in which only one parameter was at 50% of its HF condition (“50% HF”) and another 10 in which one parameter was increased by 50% of the basic HF remodeling (“150% HF”) (the exact percentages of change are specified in Table 1 in the S1 File). The different sensitivities of the most severe HF condition (“150% HF”) and the “no change” condition were then calculated, as described in Trenor et al. [17], where the indexes’ percentage of change (Dc,p,x) and sensitivities (Sc,p) were calculated as follows: (1) (2) with cp,x being the magnitude of the characteristic “c” when parameter “p” undergoes a change with respect to the basic HF model (x = 1: without HF and x = 2: 150% HF), and cbasic the value of the same property in the basic HF model; Δa is the total interval of change of parameter p. The evaluated EP characteristics are the indicators specified in the simulation protocol section and were obtained from the steady-state APs and CaTs (see Figure A in S1 File). Finally, the calculated sensitivities were normalized to the maximum absolute sensitivity for each particular characteristic to facilitate the detection of the strongest effects.

Sensitivity analysis of the effects of potential drugs

One of the aims of the present work is to study how potential drug-induced alterations in the main ionic currents could modulate important electrophysiological characteristics related to Ca2+ handling in normal and failing hearts. The methodology employed consisted of modulating individual ionic conductances or maximal fluxes by applying a scale factor of ±60%. These variations were considered as a surrogate for enhancement or inhibition of one ionic transport mechanism due to the possible effect of a drug. The targeted currents or fluxes were the main parameters of the model, well known in the EP activity of myocytes: INa, INaL, Ito, the L-type Ca2+ current (ICaL), the rapid delayed rectifier K+ current (IKr), the slow delayed rectifier K+ current (IKs), IK1, INCX, INaK, JSERCA, the SR Ca2+ release flux via RyR (Jrel), Jleak, and the Na+ background current (INab). Since we wanted to study and compare the modulation in normal and failing conditions, these changes were applied to both models separately, obtaining two sensitivity analyses. When the HF model was used, modifications were done by maintaining the electrical remodeling affecting ionic parameters. Once the simulations had been performed, the EP characteristics were measured from the steady-state APs and CaTs (see Figure B in S1 File). For each EP characteristic and parameter, the indexes’ percentage of change (Dc,p,x) and sensitivities (Sc,p) were calculated similarly to those of the first sensitivity analysis (Eqs.1 and 2). In this case, there were two basic models, the ORdmm model with and without HF, and sensitivities were calculated from the variation -60% (x = 1) to +60% (x = 2); Δa remains constant and has a value of 1.2.

In the last step, to identify the parameters with the strongest influence on each EP indicator, the relative sensitivity was calculated as the ratio between each sensitivity and the maximum absolute sensitivity for that particular characteristic.

Results

Impact of HF remodeling variability on Ca2+ dynamics

Firstly, we analyzed the individual effects of the variability on the different ionic parameters remodeled in HF on Ca2+ indicators (see Fig 3), to find the relative sensitivities of all the combinations of EP characteristics (vertical) to parameter variations (horizontal). A color scale, from dark blue to dark red highlights the strongest effects of each indicator (rows). The maximum absolute sensitivity (Sc,p) is shown in each row to indicate the total impact of the parameters on a particular characteristic. In addition to sensitivity values, it is also important to find the dependency directions between the variables. For this, positive and negative signs indicate whether the change of the ionic current and the HF characteristic follow the same tendency or an inverse tendency, respectively.

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Fig 3. Relative sensitivities of the electrophysiological properties to changes in electrophysiological remodeling in the HF model.

In the color scale, dark red indicates maximum relative sensitivity of a particular electrophysiological property to one ionic parameter, whereas dark blue indicates lack of dependency. Signs indicate whether the dependency is direct (+) or inverse (-). Percentages in each box indicate the maximum absolute sensitivity of the EP property in that row to one of the ionic parameters. The modulated parameters are: the late Na+ current (INaL), the time constant of inactivation of the INaLhL), the transient outward current (Ito), the inward rectifier K+ current (IK1), the Na+/K+ pump current (INaK), the Na+/Ca2+ exchanger (INCX), the fraction of active binding sites of the Ca+2 calmodulin-dependent protein kinase II (CaMKa), the sarcoplasmic reticulum (SR) Ca2+ pump (JSERCA), the SR Ca2+ leak (Jleak) and the sensitivity to [Ca2+]JSR of the RyR (Ca2+ sensitivity of Jrel,∞, called Krel,Ca). The electrophysiological properties are: action potential duration (APD90 and APD30), Ca2+ transient duration (CaTD80 and CaTD30), rise time of CaT (t10-90), systolic and diastolic Ca2+ levels in the cytosol ([Ca2+]i), the subsarcolemmal space ([Ca2+]ss), the junctional SR ([Ca2+]JSR) and the network SR ([Ca2+]NSR), and intracellular Na+ peak ([Na+]i).

https://doi.org/10.1371/journal.pone.0187739.g003

From this sensitivity analysis, it can be deduced that INaL and INaK are the most important contributors to APD variations. The enhancement of both currents prolongs APD, but the former has a greater effect on APD90 and the latter on APD30. τhL and INCX also have a mild effect. Fig 4 shows the values of selected EP indicators with the variations of the parameters and the currents that exert a relevant influence. Panel A shows how APD90 is modulated by these parameters.

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Fig 4. Sensitivity of electrophysiological properties to changes in ionic current parameters in the HF model.

Changes in APD90 (panel A), CaTD80 (panel B), systolic and diastolic [Ca2+]i (panels C and D), rise time of CaT (panel E) and SR Ca2+systolic load (panel F) with the ionic parameters labeled. Axis x represents the simulation conditions; for ‘‘HF basic” the remodeling of the basic HF model is considered, for ‘‘No change” the labeled parameter is unchanged as it is in the ORdmm model, for ‘‘50% HF” the HF condition is reduced by 50% in the labeled parameter and for ‘‘150% HF” the HF condition is increased by 50%. The star represents the value of the indicator under simulated normal conditions.

https://doi.org/10.1371/journal.pone.0187739.g004

Interestingly, JSERCA is the major contributor to most of the EP properties related to Ca2+ dynamics (Fig 3). It can be seen in Fig 4 that the SERCA “no change” condition is able to restore these indicators to their normal values, despite EP remodeling in other parameters due to HF. Fig 5 shows the changes in CaT morphology due to SERCA remodeling in HF; a considerable recovery can be obtained by simply restoring the SR Ca2+ uptake function. CaTD shows a negative sensitivity to SERCA and the duration is increased with the inhibition of the pump during HF (Fig 4B, dashed green line). The other ionic parameters with an effect on CaTD are far from the influence of JSERCA. For instance, although the reduction of INaK (dashed red line) has a positive dependence and could help to reduce the duration, the sensitivity value is small. Thus, restoring JSERCA to its normal value would restore the CaTD value of non-failing myocytes (around 400 ms). The CaTD30 sensitivities show a similar tendency to the CaTD80 sensitivities in all the parameters but the values are higher.

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Fig 5. Effect of JSERCA remodeling in HF on CaTs.

Normal (N) vs failing (HF) conditions varying JSERCA from the original value in the ORdmm model (no change) to 150% of its value in HF.

https://doi.org/10.1371/journal.pone.0187739.g005

Another important characteristic of Ca2+ dynamics is the rise time (t10-90). The SERCA pump is the strongest modulator of t10-90. As shown in Fig 3, Jleak and Krel,Ca also affect t10-90, although to a lesser extent than SERCA. Both parameters are related with Ca2+ extrusion from the SR, in the cytosol and the subspace, respectively. Indeed Krel,Ca is the sensitivity of Jrel to [Ca2+]JSR, meaning that a reduction of Krel,Ca leads to a higher release through RyRs. In general, HF conditions slow down the CaT rise, but reduced Krel,Ca helps to accelerate it (Fig 4E, solid red line). The high impact of the abnormal SERCA function, increasing t10-90, is one of the major problems in HF, and the enhancement of INCX (dotted blue line) contributes to a slow rise in CaT, although to a lesser extent.

[Ca2+] in all cell compartments is strongly modulated by the reduced JSERCA in HF. Specifically, systolic [Ca2+]i values decrease when SERCA activity is reduced (Fig 4C), while diastolic concentrations increase (Fig 4D). The influence of INCX (dotted blue line) enhancement is also important and contributes to a general reduction of [Ca2+]i. Reduced INaK (dashed red line) also leads to higher systolic Ca2+. Diastolic values are also sensitive to changes in Jleak and Krel,Ca (dashed blue and solid red lines, respectively). In the subspace, the sensitivity of [Ca2+] to ionic parameters is similar to the sensitivity in the cytoplasm, but with higher sensitivity values of the systolic Ca2+ peak (see rows 8 and 9 in Fig 3).

As the SR Ca2+ load is altered in HF and contributes to CaT changes, Ca2+ concentrations during an AP in this compartment were also analyzed. Both the junction and the network compartments have similar sensitivities to EP remodeling changes. In fact, JSERCA (dashed green line) remains the most important factor in modulating SR Ca2+ load, followed by Jleak, Krel,Ca, and INCX (Fig 4F). Exceptionally, it can be seen that in the JSR, Krel,Ca is the main parameter that affects systolic concentration, closely followed by JSERCA (see row 10 in Fig 3). The negative effect of JSERCA on systolic [Ca2+]JSR is because of the smaller gradient between intracellular and SR [Ca2+], leading to lower Jrel. Consequently, the systolic [Ca2+]JSR minimum peak is less marked and the value becomes more positive as SERCA activity decreases.

The [Na+]i analysis shows high dependence on INaK in an inverse mode, as expected (Fig 3, last row), while the sensitivity of the rest of the parameters is less than 10%.

Sensitivity of the normal and the HF model to potential effects of drugs

Fig 6 summarizes the results of the sensitivity analyses of AP and Ca2+ indicators to the same ionic modulation, simulating potential effects of pharmacological treatments in normal and failing conditions, showing the relative sensitivities on a color scale. The differences between the two models are indicated by the colors as well as by the different maximal sensitivities.

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Fig 6. Relative sensitivities of the electrophysiological properties to modulating effects of potential drugs.

Sensitivities in normal (panel A) and failing conditions (panel B). In the color scale, dark red indicates maximum relative sensitivity of a particular electrophysiological property to one ionic parameter, whereas dark blue indicates lack of dependency. Signs indicate whether the dependency is direct (+) or inverse (-). Percentages in each box indicate the maximum absolute sensitivity of the EP property in that row for all ionic parameters. The modulated parameters are: the fast Na+ current (INa,), the late Na+ current (INaL), the transient outward K+ current (Ito), the L-type Ca2+ current (ICaL), the rapid delayed rectifier K+ current (IKr), the slow delayed rectifier K+ current (IKs), the inward rectifier K+ current (IK1), the Na+/Ca2+ exchange current (INCX), the Na+/K+ pump current (INaK), the Ca2+ uptake via SERCA pump (JSERCA), the SR Ca2+ release flux via RyR (Jrel), the SR Ca2+ leak (Jleak) and the Na+ background current (INab). The electrophysiological properties are: action potential duration (APD90 and APD30), Ca2+ transient duration (CaTD80 and CaTD30), rise time of CaT (t10-90), systolic and diastolic Ca2+ levels in the cytosol ([Ca2+]i), the subsarcolemmal space ([Ca2+]ss), the junctional SR ([Ca2+]JSR) and the network SR ([Ca2+]NSR), and intracellular Na+ peak ([Na+]i).

https://doi.org/10.1371/journal.pone.0187739.g006

The response of normal and failing EP properties to the same changes in the main ionic currents can be seen in this sensitivity analysis. In general, the effects on EP characteristics follow the same tendency in both models, but with different sensitivities in some cases, showing a different response to the same change. Figs 7 and 8 show the most important ionic factors leading to important changes in the different indicators (APD90, APD30 and CaTD80 in Fig 7, and t10-90 and systolic and diastolic [Ca2+]i in Fig 8) in normal and failing myocytes.

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Fig 7. Sensitivity of APD90, APD30 and CaTD80 to the effects of drugs in normal (N) and failing (HF) conditions.

Changes in APD90 (panels A and B), APD30 (panels C and D) and CaTD80 (panels E and F). Axis x represents simulation conditions; for ‘‘0” the basic model is considered, for ‘‘± 60%” the labeled parameter has been changed by this percentage.

https://doi.org/10.1371/journal.pone.0187739.g007

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Fig 8. Sensitivity of t10-90, systolic and diastolic [Ca2+]i to the effects of drugs in normal (N) and failing (HF) conditions.

Changes in the rise time of CaT (panels A and B), in systolic and diastolic [Ca2+]i (panels C, D and E, F). Axis x represents simulation conditions; for ‘‘0” the basic model is considered, for ‘‘±60%” the labeled parameter has been changed by this percentage.

https://doi.org/10.1371/journal.pone.0187739.g008

First, APD is highly sensitive to IKr, which shortens APD when the current is enhanced (Fig 6, rows 1 and 2 of both panels). INaL and ICaL are also important contributors to APD changes. However, in comparison with normal conditions, in HF APD90 is more sensitive to changes in INaL(compare panels A and B of Fig 7, dashed magenta line). Furthermore, APD30 shows a negative dependency on ICaL (dashed brown line) and JSERCA (dashed green line) when these are reduced, which is not seen in normal conditions (Fig 7, panels C and D). Thus, under HF conditions, the INaL block should be more effective in reducing APD90 than in normal conditions, and unexpectedly, an ICaL block or a reduction in JSERCA could have negative effects and increase APD30.

With respect to CaT characteristics in normal conditions, again JSERCA seems to be the major contributor (Fig 6, rows 3–7 of both panels). CaTD has a negative sensitivity to SERCA, and although in HF this ionic transport also has a strong effect, it is less marked than in normal conditions. It can be observed that increasing the JSERCA block in the HF model barely increases CaTD, compared to the lengthening produced in normal conditions (Fig 7, panels E and F, dashed green line). However, the enhancement of Ca2+ uptake reduces CaTD similarly in both conditions. Blocking NCX (dotted blue line) shortens CaTD, but the influence of ICaL (dashed brown line) is reduced in HF in such a way that an enhancement of this current does not improve CaTD. On the other hand, it is to be noted that the effect of changes in IKr on CaTD in the HF model becomes important (Fig 6, row 4, panel B). IKr (dotted red line) block in HF prolongs CaTD, whereas this effect is non-existent in normal conditions. Thus, IKr block in HF could have negative effects on CaTD, in addition to the prolongation of APD.

Regarding CaT rise time (t10-90), a JSERCA block in normal conditions significantly increases this property, acting as the most influential parameter. On the other hand, when it is enhanced, a very slight reduction of t10-90 is observed (Fig 8A, dashed green line). However, in HF, SERCA enhancement significantly contributes to the reduction of t10-90, reaching a value close to the normal rise time (Fig 8B). Similar reductions can be obtained with the INCX block (dotted blue line). ICaL and Jleak also modulate the rise time, especially in HF.

[Ca2+] in all cell compartments is highly regulated by JSERCA, followed by INCX, Jleak, and ICaL (Fig 6, rows 6–12). JSERCA enhancement contributes to the increase of systolic levels and Ca2+ SR load and to the reduction of diastolic levels. However, INCX inhibition increases Ca2+ concentration and has a greater effect than SERCA during systole (Fig 6, row 6). In HF, these parameters have less impact on the Ca2+ peak and the modification of INCX (dotted blue line) and JSERCA (dashed green line) produce smaller variations than those in normal conditions (Fig 8, panels C and D). Diastolic [Ca2+]i presents a similar sensitivity to INCX and JSERCA in HF and normal conditions. However, the INCX block (dotted blue line) has a relevant effect, enhancing diastolic levels and worsening HF changes (Fig 8, panels E and F). In the subspace, responses to variations in ionic currents are similar to those of the cytosol but with higher sensitivity values during the systole (Fig 6, rows 8 and 9).

Ca2+ concentrations in the SR are also regulated by JSERCA, followed by Jleak and INCX. Jrel seems to affect only systolic [Ca2+]JSR in HF, whereas in normal conditions it is a secondary influence (Fig 6, rows 10–12).

Finally, the [Na+]i analysis shows high sensitivity to INaK in an inverse mode. There are no important differences between normal and HF sensitivities, but INaL has a higher impact in HF (Fig 6, last row).

Discussion

Major findings

In this study Ca2+ dynamics and APs were simulated in a human ventricular model (ORdmm) to shed light on the role of some ionic current characteristics and reveal other mechanisms that may take part in Ca2+ cycling during HF. The first sensitivity analysis highlights the strong effect of JSERCA, among other parameters remodeled in HF, on the modulation of Ca2+ indicators. Under HF conditions, depressed SERCA activity worsens all the EP characteristics related to Ca2+, which are the hallmark of HF: CaT rise time, systolic and diastolic [Ca2+], CaT duration and SR Ca2+ content. Enhancing the SERCA uptake function to its normal activity improves all these Ca2+ characteristics and could restore contraction.

The comparison of Ca2+ sensitivities to drug-induced alterations in the main ionic currents in normal and HF conditions reveals some parameters that modulate Ca2+ dynamics in a different way. As blocking IKr has a marked influence in prolonging CaTD in HF in comparison to its effect in normal conditions, IKr blocking drugs should be avoided in HF for their impact not only on APD but also on contractility. Blocking INCX could be beneficial in HF, as it improves CaT rise time, however it could also increase diastolic [Ca2+]i, which worsens contraction. These opposing effects should be taken into account when considering blocking NCX. SERCA enhancement in HF is highly effective in reducing t10-90, but its depressed activity requires extreme enhancement to restore systolic [Ca2+]i.

Comparison with experimental results

In this work the electrophysiological activity of human ventricular myocytes was simulated using the latest human AP model with a detailed formulation of Ca2+ dynamics [19], using Ca2+ cycling formulated from human experimental data. However, the simulated Ca2+ transients and concentrations are generally smaller than those found in the literature, possibly because of the high electrophysiological variability of the experimental data, due in part to the fluorescence-based technique used to measure intracellular Ca2+ [5,7,24]. Despite these drawbacks, simulations are able to mimic Ca2+ transients and reproduce the abnormalities in Ca2+ dynamics observed in failing human hearts. The main alterations are long Ca2+ transients of reduced amplitude and SR with less Ca2+ content [3,25,26].

Some experimental studies have focused on the main ionic transporters taking part in Ca2+ cycling (L-type Ca2+ channels, RyR channels, SERCA, and NCX) to improve contraction [14,15,27,28], and many mechanistic details of Ca2+ dynamics have been discovered to date. The present work was designed to analyze these mechanisms under different conditions (normal and heart failure) to complement the experimental results and increase our understanding of how they work. From our sensitivity analysis, it can be seen that SERCA plays an important role in modulating Ca2+. SERCA’s main function is to remove cytosolic Ca2+ and reintroduce it into the SR during diastole for myocardial relaxation. It is therefore reasonable to assume that reducing SERCA activity would increase diastolic [Ca2+]i, slow the rate of CaT decay, and reduce the SR Ca2+ load. SR Ca2+ store depletion indirectly reduces Ca2+ release and systolic function. In fact, after Ca2+ uptake function inhibition, healthy myocytes showed changes in CaT and SR Ca2+ content, for example using the use of thapsigargin or TBQ in rats [2931]. Under failing conditions, we obtained the same alterations in Ca2+ indicators, which presented a high sensitivity to SERCA, which highlights the strong effect of SERCA on the rest of the ionic mechanisms affected by HF remodeling. Increased inhibition of the SERCA function resulted in higher alteration in Ca2+ dynamics, while the restoration of a normal SR Ca2+ uptake showed a significant improvement of all these EP characteristics. Specific pharmacological agents to enhance SERCA activity have not been developed so far, but our results can be compared with those obtained using gene therapy methods. In agreement with our simulations of SERCA variability in normal conditions, transgenic rabbit cardiomyocytes overexpressing SERCA led to an increased magnitude of CaT and SR content compared to the control [32]. However, Morimoto et al. [33] did not find significant changes in SR Ca2+ content nor in time to peak in transgenic mice, although SERCA overexpression did increase the CaT peak, which could be related with the insignificant effect on t10-90 in normal conditions that we observed in our analysis with enhanced SERCA.

Enhancing SERCA in HF improves cellular Ca2+ homeostasis. SERCA overexpression in failing cells restored Ca2+ handling in rats [34], as well as in humans [35]. In our simulations, a 60% increase in SERCA activity led to the lower recovery of Ca2+ indicators in HF than in normal conditions. Indeed, the depressed activity of the pump in HF is responsible for these discrepancies, and studies should be performed taking into account that different results may be obtained applying the same therapy under normal and failing conditions. Rocchetti et al. [36] observed that istaroxime stimulated SERCA uptake function in failing myocytes, restoring Ca2+ levels and, in contrast to our results, the effect on failing myocytes was higher than on the non-failing ones. However, differences between experiments and simulations should be taken with caution. Our 60% SERCA enhancement represents an increase of the downregulated protein in HF whereas istaroxime seems to restore the abnormal SR Ca+2 uptake function by targeting secondary molecules interacting with the pump, such as PLB. There might be other sources for discrepancies between our simulation results and Rocchetti et al. experiments, such as species differences (guinea pig vs human myocytes), HF stage, and EP remodeling.

The altered NCX activity in HF also has an impact on Ca2+ handling. An increased reverse mode occurs due to [Na+]i accumulation, increasing Ca2+ influx. At the same time, the upregulated forward mode increases Ca2+ efflux, resulting in cellular Ca2+ loss and a reduced SR Ca2+ load. Therefore, most of the consequences of remodeled NCX worsen Ca2+ dynamics and the possible beneficial effect of NCX inhibition has been analyzed in several studies. SEA0400, a NCX inhibitor, did not produce significant changes either in the shape or in the magnitude of the CaT in normal guinea pig or canine myocytes [3739], although Ozdemir et al. [40] observed an increased CaT peak and SR Ca2+ content in pigs. However, positive effects were also observed on Ca2+ homeostasis in transgenic animals with NCX overexpression [41,42], as observed in the present simulations. These results suggest a dependency on the animal model and highlight the need for human experimental data, as well as the careful selection of the pharmacological agent. SN-6, another NCX inhibitor, was found to have a negative inotropic action in normal and failing cardiomyocytes, with a greater reduction of SR Ca2+ content in HF [43]. In this case, the non-specificity of the blocker and the effect on other currents, such as ICaL can affect the results, so that further experimental studies are required to clarify the effects of NCX inhibition, especially in the failing human myocardium.

The third pathway related to sarcoplasmic Ca2+ is its release through RyR channels. In HF, these Ca2+ proteins undergo a slightly increased Ca2+ sensitivity, which favors the Ca2+-induced Ca2+ release process. The main problem in HF is that RyRs become leaky and Ca2+ is released spontaneously during diastole, typically in the form of Ca2+ sparks [44]. As our HF model reproduces the effect of Jleak, contributing to abnormal Ca2+ cycling, its inhibition would thus be beneficial for myocardial contraction. However, in the ORd model, Jleak was formulated independently of the RyR channel, representing a continuous Ca2+ leakage from the SR through the SERCA pump. In this case, it is not possible to compare our results with the effects of any drug able to alleviate this leak. In our simulation study, sensitivity to RyR channels (Jrel) was analyzed independently of Jleak. This ionic mechanism did not have strong effects on Ca2+ dynamics in our simulations, unlike most of the published experimental results. Inducing Ca2+-leak with caffeine or ryanodine in rats reduced CaT amplitude and changed systolic and diastolic concentrations [30]. Tetracaine, an RyR inhibitor, could reverse these variations and restore normal Ca2+ dynamics. Since caffeine decreases SR Ca2+ content, increasing the activity of the RyR does not have a positive inotropic effect [45], but the negative effects are not clear.

Benefits and predictions from systematic sensitivity analyses

Unlike experimental studies, sensitivity analyses are a systematic methodology that allows many parameters to be varied either independently (one at a time) or at the same time, which avoids the difficulty of replicating conditions and allows the control of all the sources of variability that affect experimental results. The selection of the animal species when analyzing cellular electrophysiology is one of the most influential factors. Due to the need for human data and the scarcity of human hearts for experimental purposes, the use of a detailed human model such as the ORd model is extremely useful. Modeling and simulation also allow the assessment of EP characteristics, which cannot be measured experimentally, such as [Ca2+] in different cellular compartments. With this approach, the modification of each parameter is quantified, while this cannot always be done accurately in experiments.

The use of sensitivity analyses has been widely extended to study physiological processes providing valuable predictions [16,17]. Other commonly used methods are multivariate analyses, which can provide additional information to that obtained with single parameter analyses [46,47]. However, we chose the simplicity and intuitive interpretation of the results by changing parameters individually, as this is also an accepted method used in this type of study [16,17]. Once the consistency of the sensitivity analyses results have been verified and compared against available experimental data, predictions can be made of how specific EP indicators are modulated by changes in ionic parameters for which data are not available. In agreement with previous studies, IKr block and INaL enhancement prolong APD, a situation aggravated under failing conditions [4850]. The high sensitivity of [Na+]i to INaK and the increase in [Na+]i due to the dysfunction of this pump in HF extruding less Na+ out of the cell were also as expected [51,52]. This [Na+]i accumulation is related to APD shortening when the electrogenic Na+/K+ pump is inhibited because it increases the NCX reverse mode (outward current) and contributes to cell repolarization [16,17,51,53]. Other modulations of EP characteristics by ionic parameters in HF are less obvious. For instance, blocking ICaL and JSERCA may have negative prolonging effects on APD30 which does not occur under normal conditions. In terms of Ca2+ characteristics, blocking IKr prolongs CaTD. The present simulation results predict that several Ca2+ indicators are unexpectedly more influenced by changes in INCX than changes in SERCA in the failing myocyte. Unfortunately, the supposed beneficial blocking of NCX has negative consequences on diastolic [Ca2+]i (raising its value), while enhancing SERCA always contributes to improving Ca2+ dynamics. These predictions would of course need to be validated using experimental results. The strength of systematic sensitivity analyses is their predictive power and the indications they provide for the design of the required experiments thus contributing to reducing the time and costs involved in drug design.

Limitations of the study

The limitations of the present study are linked, on the one hand, to the use of a mathematical model for the action potential. Despite its validation using human data, there are still some quantitative differences in intracellular Ca2+ levels. Additionally, in some situations, the model does not represent all the ionic mechanisms that are commonly described in the literature as is the case of Jleak which, in the ORd model, was formulated only as a backflux of the SERCA pump. However, in other models [21,54,55], Jleak is considered as a secondary efflux through the RyR channels, sometimes coexisting with a reverse SERCA flux [44]. For this reason, the analysis of the effects of Jleak and Jrel should be taken with caution, i.e. accordingly to the model formulation. Also, in our study, JSERCA was considered separately from the Jleak term, both of them included in the original ORd Jup formulation. Finally, the electrical remodeling associated with HF is not unique [23,5658], as there are discrepancies and variations regarding some ionic currents due to the data generated in different experimental studies.

The scarcity of available human data has hampered the validation of our results, thus affecting their predictive value, and the wide variations in the existing experimental studies on different species and treatments, also make the validation of the simulations difficult.

Supporting information

S1 File. Supplemental material.

Extended Methods and Steady-state conditions.

https://doi.org/10.1371/journal.pone.0187739.s001

(DOCX)

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