Electrical impedance tomography (EIT) is a promising imaging technique for bedside monitoring of lung function. It is easily applicable, cheap and requires no ionizing radiation, but clinical interpretation of EIT-images is still not standardized. One of the reasons for this is the ill-posed nature of EIT, allowing a range of possible images to be produced–rather than a single explicit solution. Thus, to further advance the EIT technology for clinical application, thorough examinations of EIT-image reconstruction settings–i.e., mathematical parameters and addition of a priori (e.g., anatomical) information–is essential. In the present work, regional ventilation distribution profiles derived from different EIT finite-element reconstruction models and settings (for GREIT and Gauss Newton) were compared to regional aeration profiles assessed by the gold-standard of 4-dimensional computed tomography (4DCT) by calculating the root mean squared error (RMSE). Specifically, non-individualized reconstruction models (based on circular and averaged thoracic contours) and individualized reconstruction models (based on true thoracic contours) were compared. Our results suggest that GREIT with noise figure of 0.15 and non-uniform background works best for the assessment of regional ventilation distribution by EIT, as verified versus 4DCT. Furthermore, the RMSE of anteroposterior ventilation profiles decreased from 2.53±0.62% to 1.67±0.49% while correlation increased from 0.77 to 0.89 after embedding anatomical information into the reconstruction models. In conclusion, the present work reveals that anatomically enhanced EIT-image reconstruction is superior to non-individualized reconstruction models, but further investigations in humans, so as to standardize reconstruction settings, is warranted.
Citation: Thürk F, Boehme S, Mudrak D, Kampusch S, Wielandner A, Prosch H, et al. (2017) Effects of individualized electrical impedance tomography and image reconstruction settings upon the assessment of regional ventilation distribution: Comparison to 4-dimensional computed tomography in a porcine model. PLoS ONE 12(8): e0182215. https://doi.org/10.1371/journal.pone.0182215
Editor: Yingchun Zhang, University of Houston, UNITED STATES
Received: January 31, 2017; Accepted: July 16, 2017; Published: August 1, 2017
Copyright: © 2017 Thürk et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Data Availability: All relevant data are within the paper and its Supporting Information files. All model files are available from the Zenodo database (accession number 10.5281/zenodo.575863).
Funding: This study has been funded by the Vienna Science and Technology Fund (WWTF; http://www.wwtf.at/index.php?lang=EN) through project LS 14-069. The funder had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
Competing interests: The authors have declared that no competing interests exist.
Assessing lung function in patients with failing lungs is essential for personalized optimization of ventilator settings–and subsequently, for their clinical outcome . Commonly, global parameters, such as the compliance of the respiratory system, are directly assessed at the patient’s bedside [2,3]. More detailed information on the regional lung condition, on the other hand, is provided by modern imaging technologies. Computed tomography (CT) and other sophisticated radiologic imaging techniques make highly-resolved spatial information accessible, but they yield only single point measurements, require relocation of the patient and are associated with radiation exposure.
A promising technology for the dynamic bedside monitoring of lung function is electrical impedance tomography (EIT), a non-invasive and radiation-free imaging modality. EIT provides 2-dimensional images at high temporal resolution (up to 50 Hz), describing thoracic impedance changes mainly caused by tidal ventilation . The working principle is based on repetitive, rotating injection and measurement of small currents and voltages, respectively, from surface electrodes attached around the thorax. Sophisticated reconstruction algorithms are then applied to obtain EIT-images of low spatial resolution (usually 32x32 pixels) .
Various studies have validated the ability of EIT to display regional ventilation distribution against established imaging modalities like dynamic CT , positron-emission tomography , single photon emission CT , or XENON CT . Furthermore, parameters such as regional lung compliance , regional over-distention , lung inhomogeneity  or cyclic recruitment  can be accurately determined by EIT images, but require defined ventilation maneuvers (e.g., slow inflation, or defined pressure trials).
Despite the above-mentioned potential to dynamically monitor lung function, EIT has not yet been adopted in the routine clinical setting. This is due to the fact that correct interpretation of basic EIT-images requires expert knowledge, and that large clinical trials demonstrating the benefit of EIT-guided ventilation are still missing. Moreover, easily comprehensible and clinically meaningful parameters–produced without the need for specific ventilation maneuvers–are desperately needed. Among several technical challenges of EIT that need to be addressed in order to achieve this goal, one critical issue remains the ill-posed nature of the EIT-image reconstruction. As electrical currents branch out inside the body , no unique solution for the inverse problem exists  and the generated EIT-images highly depend upon reconstruction algorithms and their settings . Usually a finite element model (FEM) is utilized to compute an approximate (forward) solution for the given spatial domain prior to the reconstruction process . Inaccurate shapes of this FEM highly influence the resulting EIT-image, due to mismatching electrical field simulations .
In order to enhance the information content and improve the positional accuracy of EIT-images, it has been proposed to embed a priori anatomical information–such as thoracic body contours and lung boundaries–into EIT-image reconstruction [18,19]. Although some efforts have been made to provide averaged contour models in regard to anthropometric data for different species , most commercially available clinical devices still rely on inaccurate models , and thorough clinical validation studies are missing. Additionally, since no standard has yet been established in EIT reconstruction, different reconstruction algorithms and settings further increase the number of possible EIT-images [16,21]. Recently, the EIT community tried to approach this problem by defining certain quantifiable figures of merit within the Graz consensus Reconstruction algorithm for EIT (GREIT) . Even so, various reconstruction parameters (e.g., regularization term) can still be selected arbitrarily, whereby their influence on the resulting EIT-images and derived parameters has not yet been comprehensively analyzed in-vivo.
In order to address the issues of EIT-image reconstruction, the aim of the present study was first to assess the impact of reconstruction settings for GREIT and Gauss Newton, and to identify optimal reconstruction settings. Secondly, applying these settings, we investigated the impact of different reconstruction models in their ability to assess regional ventilation distribution by comparing the results to the gold-standard technique of 4-dimensional CT (4DCT). All measurements were performed in a piglet animal model because of the high anatomical similarity to human lungs. Tidal ventilation EIT-images were reconstructed by (1) standard circular shape, (2) averaged thoracic body contours, and (3) individualized thoracic body contours. Moreover, EIT-images derived from (2) and (3) were further enhanced by integration of anatomical lung borders to extract pulmonary EIT-pixels only.
Material and methods
After approval by the animal ethics committee of the Medical University of Vienna (ethics approval No. 53/11), N = 13 landrace piglets (average age 81±22 days; weight: 29±6 kg) in total were investigated. Two animals were necessary to implement the setup and the study protocol. A further three animals were required to investigate the impact of the different EIT-image reconstruction settings. Model comparisons were conducted in eight animals. Thus, N = 11 animals could be included for analysis. The present study was carried out in strict accordance with the recommendations in the Guide for the Care and Use of Laboratory Animals of the National Institutes of Health, and all efforts were made to avoid animal suffering . All animal experiments were performed at the facilities of the University of Veterinary Medicine, Vienna, Austria.
Experimental setup and animal treatment
On the day of the experiments, the animals were sedated at the animal housing facilities via intramuscular injection of 0.4 mg kg-1 atropine, 8 mg kg-1 azaperone, 0.2 mg kg-1 midazolam and 3 mg kg-1 s-ketamine. Thereafter, the animals were transported to the operation room, where general anesthesia was induced and maintained with intravenous 10–20 mg kg-1 hr-1 propofol and 5–10 μg kg-1 hr-1 fentanyl. After orotracheal intubation (7.5 to 8.5 ID) the animals were mechanically ventilated (Elisa 800, SALVIA medical GmbH, Germany) in pressure-controlled mode using a protective ventilation regime: Plateau pressure (PInsp) was set so as to achieve a tidal volume (VT) of 6 ml/kg body weight; a positive end-expiratory pressure (PEEP) was set to a level of 5 cm H2O; the fraction of inspired oxygen was set to 0.4; the respiratory rate was adjusted to maintain normocapnia, resulting in 20–30 breaths per minute. Arterial and central venous lines were placed using ultrasound-guided puncture and the Seldinger technique to gain vascular access for routine monitoring. The animals’ body temperatures were kept between 38°C and 39°C via body surface warming. Animals were monitored continuously for depth of anesthesia and cardiopulmonary stability.
Thereafter, the animals were transferred to the CT facility (Emotion 16, Siemens, Germany) and routine monitoring of respiration and hemodynamic parameters was implemented using an Infinity® Delta Monitor (Infinity® Delta Monitor, Dräger Medical, Lübeck, Germany). Dynamic multi-detector (16-slice) CT (4DCT) measurements were performed with slice collimation of 16x0.6 mm and a gantry rotation time of 0.6 seconds, resulting in volume stacks of 4.8 mm in height at a sampling frequency of 1 Hz. The tube potential was set to 70–80 kV and no contrast agent was applied.
The EIT sensor belt was attached around the thorax at approximately the 6th to 8th intercostal space and connected to the EIT measurement device (EIT Pioneer Set, Swisstom AG, Landquart, Switzerland). For this study, we used custom-built EIT sensor belts with 32 active electrodes, which were manufactured on request by Swisstom (Swisstom AG, Landquart, Switzerland). What set the custom-built EIT sensor belt apart from the commercially distributed ones was the connection to active amplification was placed approximately 15 cm below the surface electrode plane. This was achieved by enlarging the conductance textile material of the sensor belt and by isolation of the respective electrodes, so as to avoid any noise during CT acquisition from the metallic components of the amplification circuit. Thus, this custom-built EIT belt had no influence on radiation attenuation and was well suited for synchronized EIT and 4DCT measurements. EIT Measurements were performed with 3 mA injection current at 195 kHz, skip 4 measurement technique  and a 48 Hz sampling frequency.
Before performing the measurements, all recording devices were synchronized to the time-stamp of the CT scanner. At the end of the experiments, the animals were euthanized under deep anesthesia by an overdose of propofol, fentanyl, and potassium chloride.
Prior to the measurements, an initial CT topogram and a baseline volume CT scan were performed. Then, the CT table position was set to match the central EIT sensor belt position and was fixed for 4DCT measurements. Five minutes prior to the synchronized measurements of EIT and 4DCT, mechanical ventilation was set as follows: Pinsp was adjusted to obtain a VT of 10 ml/kg body weight; respiration rate was set to 6 min-1; inspiration-to-expiration time was set to 1:1; a PEEP of 5 cm H2O was dialed in. Then, EIT and 4DCT recordings were captured synchronously over the course of three consecutive breathing cycles at a sampling frequency of 48 Hz and 1 Hz, respectively. This resulted in a measurement duration of at least 30 seconds, with approximately 30 CT lung stacks and 1,440 EIT frames captured over the recording time period. The time courses (in Hounsfield Units HU(t) by 4DCT and in voltage u(t) by EIT) were digitally stored for further post-processing. After the 4DCT measurement, an additional volume CT scan was performed during an inspiratory breath hold from the level of the cervicothoracic transition (i.e., above the lung apex) to the liver. This scan was later used to extract the anatomical information for modeling the individualized FEM.
Model generation and EIT-image reconstruction
Images were reconstructed based on three different types of FEMs. A circular FEM (M1) without any anatomical information and an averaged FEM for pigs (as previously described in ) (M2) were utilized as non-individualized models. Additionally, an individualized FEM (M3) was created for each pig based on anatomical information (compare Fig 1II). For this purpose, the volume CT scans during the inspiratory hold were used to extract the individual contours of thorax, lungs and heart (see Fig 1I) at the EIT sensor belt level. This segmentation procedure was performed manually for each pig and controlled by a second radiologists. The mismatch of model contours between M1, M2 and M3 was quantified using the symmetric difference . For this purpose, the thorax contours were aligned based on their gravitational center and normalized to the same area (π). The relative error ΔS was then calculated as the ratio of non-overlapping area to π (see S1 Fig).
I) Volume CTs were recorded for each pig and the contours of thorax, lungs and heart were extracted by radiologists. II) Finite element models were created using no prior information (M1), averaged contours (M2) or individual contours of each animal (M3). These models and optimized reconstruction settings were utilized to calculate the reconstruction matrix of EIT. III) Experimental measurement of 4DCT and EIT as well as reconstruction of EIT image series Z1-3(t) and (IV) extraction of tidal volume images and their ventilation profiles.
In order to better match the nature of three-dimensional current density distribution through the thorax, FEMs were extruded to obtain 2.5D models  with approximately 200k elements. Finally, GREIT  inverse models were created for each FEM using optimized parameters (from the results section Model Comparison), yielding a total of 8 individual anatomically-enhanced models (one for each pig) and 2 general reconstruction models. Lungs and heart in M2 and M3 were weighted with 0.2 and 1.5, respectively, to account for their different conductivities, as described in . For each voltage measurement u(t), images were reconstructed using the described models to obtain impedance distributions Z1-3(t) ∈ ℝ32x32, as related to the respective models M1-3. All calculations were performed using a combination of proprietary MATLAB 2016a (The MathWorks Inc., Natick, MA, USA) scripts, the open source frameworks EIDORS 3.71  and NETGEN .
Evaluation of reconstruction settings
Similar to previous work , a systematic investigation of the reconstruction parameters was performed, in order to optimize reconstruction settings. Specifically, GREIT and Gauss Newton (GN) algorithms with different settings were compared in three pigs using their anatomically-enhanced FEM, M3. For both algorithms, noise figure nf, background uniformity (uniform or weighted lungs and heart ) and voltage reference method were varied. Difference voltage can be either calculated as time difference (TD) vdiff = v − v(tr), or normalized time difference (NTD) , with tr as an arbitrary reference time instant (one reference per measurement) . Note that for GN, the hyperparameter–determining the level of regularization–was automatically chosen to match the given nf . For GREIT, two additional parameters—the weighting radius rw and the target size ts of test samples—were considered (see Table 1 for all parameters). From each of the resulting 3010 parameter variations of M3, images were reconstructed for three pigs (a selection can be seen in Fig 2) and the correlation between tidal images of CT and EIT (see section Post-Processing of EIT and CT for more details) was calculated. The identified reconstruction parameters were then applied to all models M1-3 as described earlier.
Reconstructed EIT images showing tidal impedance changes (red = high, blue = low) using different settings for GREIT and Gauss Newton. Noise figure controls smoothing of the images, time difference (TD) and normalized time difference (NTD) are voltage reference methods, and weighted reconstruction–in contrast to uniform reconstruction–considers that lungs are less conductive than the surrounding tissue. Images are zeroed at a threshold of 10% to reduce artifacts.
Post-processing of EIT and CT
End-inspiration and end-expiration time instants, tin and tex, were detected from averaged Z(t) and HU(t) signals. Since the reconstruction model in EIT is static and works as a spatial reference space to which the relative impedance changes are mapped, tidal images can be defined as ΔZ = Z(tin)—Z(tex). A robust tidal image was obtained by averaging all ΔZ during CT measurement. For tidal images ΔZ2,3, only pulmonary pixels (from lung contours derived from CT) were selected to obtain ΔZ2+ and ΔZ3+ (see Fig 3E and 3F). If no anatomical information was used for post-processing, pulmonary pixels were determined by excluding pixels below a threshold of 10% of the maximum of ΔZ to reduce non-ventilation artifacts.
Tidal volume images and anteroposterior ventilation distribution for (a-c) EIT from M1-M3, (e) EIT with averaged reconstruction model M2 and lung mask, (f) EIT with individual reconstruction model M3 and lung mask, and (d) the reference 4DCT. Note that relative values for ΔHU are lower due to the higher spatial resolution.
In contrast to EIT, 4DCT images are not spatially normalized and show complex non-linear movements of the lungs, chest and heart. In order to calculate comparable tidal ventilation distributions based on 4DCT, a spatial mapping of the end-inspiratory image HU(tin) to the end-expiratory image HU(tex) is required. We utilized a non-rigid image registration algorithm  with high regularization to perform this mapping. Specifically, a non-linear transformation T was performed so that HU(tin) ≈ T(HU(tex)) and the tidal image ΔHU could be calculated by ΔHU = HU(tin)—T(HU(tex)). To eliminate artifacts from cardiac movement and CT reconstruction errors, all images at tin and tex, respectively, were averaged prior to registration. Furthermore, anatomical lung regions in ΔHU were identified manually by a radiologist as to decrease the influence of possible registration errors outside of the lungs.
Regional tidal ventilation profiles by 4DCT and EIT
To directly compare the ventilation distributions of 4DCT and EIT, 32 horizontal regions were defined for both ΔHU and ΔZ–thus matching the native resolution of the EIT-images (see Fig 1IV). The pixel values of each region were then summed up and normalized to calculate the anteroposterior ventilation distributions vdCT and vdEIT, whereby the latter represents vd1, vd2, vd3, vd2+ and vd3+.
To compare the ventilation distribution profiles assessed by the different EIT-image reconstructions versus those derived from 4DCT, the root mean square errors, RMSE, between vdCT and vdEIT were calculated for each pig. For statistical assessment of the differences in RMSE between EIT and 4DCT, a Kruskal–Wallis test and Tukey-Kramer’s procedure for multiple comparisons were used. Pearson correlations and Bland-Altman analysis were performed as descriptive statistics to assess the similarity and agreement between the EIT results and the gold standard of 4DCT.
Comparison of reconstruction settings
As depicted in Fig 2, reconstruction settings strongly influenced the resulting tidal ventilation EIT-images ΔZ. Without weighting (uniform background) of lung regions, in both GREIT and GN, the center of ventilation moved to the anterior site (compare TD weighted and uniform at nf = 0.15 for GREIT in Fig 2), while the right and left lung could not be clearly distinguished (except for nf above 0.3 and TD). Impedance changes were pulled towards the center of the image for NTD, producing reasonable images only for non-uniform background. For GREIT, decreasing ts with non-uniform background slightly increased the area of impedance changes in the reconstructed images, particularly in the anteroposterior axis (not shown). This effect could not be seen with uniform background and was also less pronounced for NTD. Similar blurring occurred with increasing rw, but with stronger lateral expression. Permutations with rw values below 0.15 and above 0.3 produced strong artifacts and severe distortion of the images (see S2 Fig). Differences between GN and GR were most visible for non-uniform background with a shift of ventilation activity towards the anterior site in GN. In addition, all reconstructions in GN showed stronger artifacts at electrode positions. Our results suggest the use of the GREIT algorithm with weighted lungs and heart, nf of 0.15, ts of 0.06, rw of 0.15 and TD as reference method. The corresponding maximum 2D correlation with ΔHU images for this combination and M3 was 0.69 (compare Table 2). For further verification of this first independent analysis, 4 additional pigs from the model comparison group were investigated post-hoc. While here, the top reconstruction setting turned out to be slightly different (GREIT with nf of 0.15, ts of 0.08, rw of 0.15 with NTD), our initial parameter setting was still rank 10 with a high correlation coefficient (0.66 vs. 0.681). See S1 and S2 Tables for top rankings of reconstruction algorithms.
The geometry mismatch, ΔS, between individual contours in M3 and non-individual contours in M1 and M2 were 7.66 ± 1.57% and 5.00 ± 0.96%, respectively (see S3 Table for more details). Between M1 and M2, ΔS was 8.61%. The anteroposterior ventilation distribution profiles results derived from the different EIT-reconstruction models were compared by RSME versus the results of the gold-standard method of 4DCT. Here, RMSE was highest in vd1 with 2.53±0.62%, decreased with increasing anatomical information and was significantly lower for vd3+ with 1.67±0.49% (p < 0.03). The detailed results appear in Fig 4 and Table 3. Considering descriptive statistical analysis, pooled Pearson correlation coefficients were 0.77, 0.88 and 0.89 for vd1, vd2 and vd3, respectively. While there was no difference from vd3 to vd3+, vd to vd2+ decreased slightly to 0.87. Fig 5 highlights the results for vd1 and vd3+. The Bland-Altman analysis revealed similar results of agreement, with bias (and 95% confidence interval of quantile) decreasing from -0.54% (9.58%) to -0.03% (6.86%), from vd1 to vd3+. For a data summary of distributions of vd based on the different models, see S3 Fig and S4 Table.
Boxplots for RMSE values over all pigs (n = 8). The circular model (vd1) showed high variation and high error, whereas RMSE decreased with the addition of anatomical information in vd2, vd2+ and vd3. RMSE was significantly lower after adding further individual anatomical information in vd 3+ (p < 0.03).
Comparison of regional ventilation acquired from 4DCT and EIT. a) Calculations based on the circular model M1 without anatomical information and (b) on M3 with individual boundaries and lung mask. For both, pooled Pearson correlation, Bland-Altman and distribution of differences are shown. Different symbols correspond to values from different animals (n = 8), whereby only values of vd greater than zero in at least one of the two compared methods are considered. Since the differences of both methods are not normally distributed, bias and limits of agreement are represented as median and 95% quantile interval, respectively.
In this work, the influence of different settings for EIT image reconstruction on the assessment of regional ventilation distribution was evaluated versus the gold standard technique of 4DCT. Specifically, reconstruction parameters for GREIT and Gauss Newton algorithms were evaluated; optimal settings were identified (GREIT with nf of 0.15, ts of 0.06, rw of 0.15 and weighted lung and heart regions) and applied to a circular, an averaged and a novel individualized reconstruction model. EIT-images reconstructed by averaged and individualized models were further enhanced with anatomical lung contours to identify pulmonary pixels. Tidal anteroposterior ventilation distribution profiles were calculated for all EIT-images and for the 4DCT scans. Direct comparison between the different models and 4DCT was carried out by calculation of RMSE. Our results showed that the error was highest for the circular model and lowest for the individual model—with 2.53±0.62% and 1.67±0.49%, respectively. Analogously, correlation between EIT and 4DCT was highest for the anatomically-enhanced image reconstruction method.
Measurements were carried out in an experimental animal model using piglets, allowing for high-resolution, dynamic CT scanning over a long period of 30 seconds, with high radiation dosages. The experimental setup was designed for time-synchronized EIT and 4DCT measurements during ongoing mechanical ventilation. Since the 4DCT sampling frequency was rather low (1 Hz), respiratory rate was restricted to 6 min-1 in order to capture enough CT volume stacks over the course of a single respiratory cycle for clear identification of end-inspiratory and end-expiratory phases.
Additionally, the technical features of the CT scanner used a limited longitudinal coverage (the imaged lung stack) of only 4.8 mm. Although performed on the same thoracic level as the EIT belt, the volume imaged by 4DCT is therefore not equal to that covered by EIT. This is because the current density distribution is not limited to the 2D axial slice at the central EIT sensor belt position, but also extends several centimeters (approximately 3 cm) cranial and caudal–forming a lens-shape. However, it can be assumed that the functional behavior of the lungs along the anteroposterior axis in the healthy state is mostly independent from the cranio-caudal height .
Considering that EIT in its current form has not yet been adopted in clinical routine, we are convinced that enhancing EIT-images (e.g., by adding anatomical information extracted from CT scans) has the potential to facilitate the interpretation of EIT-images, and might allow the computation of novel and clinically meaningful parameters (e.g., Silent Spaces ). Still, EIT-image reconstruction remains a challenge, due to the ill-posed nature of EIT and the lack of clinical standards. Previous studies have investigated the influence of reconstruction methods on raw EIT images, as well as on derived physiological parameters , but comprehensive evaluations do not exist. While technical works give detailed explanations on the used reconstruction algorithm, they often rely on simulated data or EIT image analysis only . In-vivo studies, on the other hand, trying to validate EIT versus a gold standard modality, mostly use commercial EIT systems with their implemented image reconstruction methods and fixed settings [6–9].
In contrast, this work establishes an experimental comparison as well as a validation of reconstruction methods. Here, we have to acknowledge that the sole use of the anatomically-enhanced FEMs (M3) to identify the optimal reconstruction settings might have biased our results. While it seems reasonable that more accurate geometries produce less errors and better spatial mapping , a comprehensive analysis of the other models (M1 and M2) should be performed in future works. In fact, reconstruction errors at the domain boundaries were highest in M1 and decreased for more accurate shapes in M2 and M3 (compare S4 Fig). It should be noted that for both, M1 and M2, ΔS was higher than 4%, which was previously considered as a reasonable threshold for reconstruction quality . This highlights the importance of individualized EIT reconstruction. Another factor that could have influenced the results is the extraction of anatomical information from a volume CT scan performed during inspiratory hold, instead of the 4DCT images. We did so to prove the basic concept that a single volume CT (which is frequently conducted in clinical setting for diagnostic purposes) can be used in clinics for anatomical-enhancement of the EIT method. Determining the lung regions from static volume CT during inspiratory hold did not capture the movement in thoracic shape, lung and heart regions caused by tidal ventilation. Here, a combination of the presented method with other evaluation methods to assess moving lung borders or functional ROI methods  might be a valuable extension to our analysis. Other potential sources of errors are the choice of tissue property weighting (e.g., for lungs and heart)  and the exclusion of bones and other tissue properies in the FEMs, but a complete evaluation was beyond the scope of this work. Finally, while anesthetic drugs were equally dosed for each animal, the actual influence of these agents on hemodynamic mechanisms (e.g. pulmonary shunt or cardiac output) was not controlled.
Besides the results showing that anatomically-enhanced EIT was superior in mapping regional ventilation distribution compared to the more classical approaches, the embedded anatomical information also offers the opportunity to post-process novel and meaningful EIT-parameters in the future. Despite these promising results, further systematic investigations are needed in regard to different ventilation settings, different pathophysiologic lung conditions or even algorithms which were not taken into account by the present study (e.g., D-bar ), before our findings can be translated into clinical practice. Nonetheless, our novel introduced individualized EIT reconstruction model could be easily transferred to clinical routine–and applied in patients where a routine volume CT has been performed for other reasons (e.g. diagnostic purpose).
We conclude that appropriate reconstruction settings are crucial for the extraction of clinically relevant information, and that individualized (anatomically-enhanced) EIT image reconstruction offers considerable improvement over recently used, non-individualized reconstruction methods.
S1 Fig. Symmetric error of model geometries.
Error of geometries for (a) individual (animal P03) versus circular model (ΔS = 8.47%), (b) individual versus mean model (ΔS = 4.33) and (c) contours of all individual models.
S2 Fig. Undesirable EIT reconstructions.
A collection of unphysiological EIT-images for certain reconstruction settings. Especially combinations containing rw below 0.1 and above 0.3 often generated distorted images from our data.
S3 Fig. Visual data summary of anteroposterior profiles for model comparison.
Data distribution of anteroposterior profiles for CT and EIT. Boxplots are given as median and 25th and 75th percentiles, respectively.
S4 Fig. Artefacts at the boundary of different model geometries.
a) Tidal volume images (animal P06) for circular (ΔZ1), averaged (ΔZ2) and individualized (ΔZ3) reconstruction model. b) After truncating the image above 10% of the maximum value, noise levels at the boundary become visible. The noise images are rectified for better visualization of noise levels (the color bar is only valid for (b)).
S5 Fig. RMSE values of all animals for reconstruction settings based on previous results.
Boxplots for RMSE values over all pigs (n = 8) using GREIT with nf = 0.15, ts = 0.05, rw = 0.25, TD and weighted lungs and heart. The circular model (vd1) showed high variation and high error, whereas RMSE decreased with the addition of anatomical information in vd2, vd2+ and vd3. RMSE was significantly lower after adding further individual anatomical information in vd3+ (p < 0.04).
S1 Table. Top 15 rankings of reconstruction settings.
Different reconstruction settings ranked by their 2d correlation values with 4DCT. Averaging the ranks of these settings provides a robust candidate for further analysis.
S2 Table. Validation of top rankings of reconstruction settings.
Based on 4 animals of the model comparison group, a validation of the “optimal” reconstruction settings was performed in accordance with the previous evaluation. The previously identified settings appear within the top 10.
S3 Table. Geometry error of models.
Individual error of model geometries for circular M1, mean M2 and individual M3 models. The error is defined as symmetric difference ΔS; i.e. non-overlapping regions of thorax contours divided by total area. As expected, ΔS was higher between M1 and M3 than between M2 and M3. All values are given in %.
S4 Table. Data summary of anteroposterior profiles for model comparison.
Summary of average and standard deviation of anteroposterior ventilation distribution calculated from tidal volume images acquired by 4DCT and different EIT Models. All values are given in % as the fraction of horizontal region of interest (roi) ventilation to total ventilation. Approximate center of ventilations are written in bold letters.
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