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An Outbreak of Cryptosporidium parvum across England & Scotland Associated with Consumption of Fresh Pre-Cut Salad Leaves, May 2012

  • Caoimhe McKerr,

    Affiliations Public Health England, Field Epidemiology Services, London, England, United Kingdom, Field Epidemiology Training Programme, Public Health England, London, England, United Kingdom

  • Goutam K. Adak,

    Affiliation Department of Gastrointestinal, Emerging & Zoonotic Infections, Public Health England, London, England, United Kingdom

  • Gordon Nichols,

    Affiliations Department of Gastrointestinal, Emerging & Zoonotic Infections, Public Health England, London, England, United Kingdom, Norwich Medical School, University of East Anglia, Norwich, England, United Kingdom, Faculty of Medicine, University of Thessaly, Larissa, Greece, European Centre for Environment and Human Health, University of Exeter, Exeter, England, United Kingdom

  • Russell Gorton,

    Affiliation Public Health England, Field Epidemiology Services, London, England, United Kingdom

  • Rachel M. Chalmers,

    Affiliation Cryptosporidium Reference Unit, Public Health Wales, Swansea, Wales, United Kingdom

  • George Kafatos,

    Affiliation Statistics, Modelling and Economics Department, Public Health England, London, England, United Kingdom

  • Paul Cosford,

    Affiliation Public Health England, London, England, United Kingdom

  • Andre Charlett,

    Affiliation Statistics, Modelling and Economics Department, Public Health England, London, England, United Kingdom

  • Mark Reacher,

    Affiliation Public Health England, Field Epidemiology Services, London, England, United Kingdom

  • Kevin G. Pollock,

    Affiliation Health Protection Scotland, Glasgow, Scotland, United Kingdom

  • Claire L. Alexander,

    Affiliation Health Protection Scotland, Glasgow, Scotland, United Kingdom

  • Stephen Morton

    Affiliation Public Health England Centre, Yorkshire & Humber, England, United Kingdom

An Outbreak of Cryptosporidium parvum across England & Scotland Associated with Consumption of Fresh Pre-Cut Salad Leaves, May 2012

  • Caoimhe McKerr, 
  • Goutam K. Adak, 
  • Gordon Nichols, 
  • Russell Gorton, 
  • Rachel M. Chalmers, 
  • George Kafatos, 
  • Paul Cosford, 
  • Andre Charlett, 
  • Mark Reacher, 
  • Kevin G. Pollock



We report a widespread foodborne outbreak of Cryptosporidium parvum in England and Scotland in May 2012. Cases were more common in female adults, and had no history of foreign travel. Over 300 excess cases were identified during the period of the outbreak. Speciation and microbiological typing revealed the outbreak strain to be C. parvum gp60 subtype IIaA15G2R1.


Hypothesis generation questionnaires were administered and an unmatched case control study was undertaken to test the hypotheses raised. Cases and controls were interviewed by telephone. Controls were selected using sequential digit dialling. Information was gathered on demographics, foods consumed and retailers where foods were purchased.


Seventy-four laboratory confirmed cases and 74 controls were included in analyses. Infection was found to be strongly associated with the consumption of pre-cut mixed salad leaves sold by a single retailer. This is the largest documented outbreak of cryptosporidiosis attributed to a food vehicle.


Cryptosporidium is a protozoan parasite, species of which can infect humans and other animals. Transmission can be via the faecal-oral route through the ingestion of oocysts in contaminated food or water, direct contact with animals, or person-person contact [1]. Cryptosporidium can be found in drinking water sources; contamination can be through agricultural run-off from grazing land, slurry and discharge of effluents from the treatment of wastewaters and outbreaks have been found to occur following heavy rainfall [2]. Infective stages can remain viable in the environment serving as a reservoir of infection and, in the case of water, as a vehicle of transmission and outbreaks involving drinking or recreational water are often reported [3]. Foodborne outbreaks of cryptosporidiosis are described less frequently and may be difficult to detect [4]. Some food related outbreak reports describe routes of infection as via contamination from water [5], eating raw meat [6] and from infected food handlers at a single event/setting [7]. There are fewer reports of evidence of direct contamination of a food product, particularly one with a wide distribution.

In May 2012 the Health Protection Agency (HPA) in Yorkshire and Humberside (Y&H) identified an increase in the reporting of cryptosporidiosis. Information was sought from other HPA regional epidemiology teams and the HPA Department of Gastrointestinal Emerging and Zoonotic Infections (GEZI). A similar rise was noticed in the North East of England (NE), East Midlands (EM), and West Midlands (WM) and by Health Protection Scotland (HPS). The excess cases were identified by reference genotyping as having C. parvum. Subsequent analysis of national laboratory reports identified over 300 Cryptosporidium cases in excess of numbers expected between weeks 18 and 25 in 2012. Increases in the reporting of cryptosporidiosis were identified from all of the English regions except London during May 2012. A national outbreak control team was convened to design and conduct detailed epidemiological investigations to identify vehicle(s) of infection associated with the outbreak

The following report describes these investigations.

Materials and Methods

Statement of ethics

Participants were contacted by trained public health professionals who were specifically aware of the organizations' patient confidentially principles and data protection requirements. Verbal informed consent was sought from all participants at the point of contact and this was recorded on the paper questionnaire and retained. This was explained to all participants. Written consent was not sought due to feasibility and time constraints. As this study concerns an outbreak with direct impact on public health, no approval was required from ethics committee.

Laboratory report surveillance

Systematic national surveillance of laboratory confirmed infectious intestinal disease, including Cryptosporidium, in humans in England and Wales has been established for many years. The system is described elsewhere [8].

Enhanced surveillance (ES)

Once the increase was noted, enhanced surveillance was introduced in Y&H, NE, EM and WM. A standard questionnaire was augmented to collect detailed descriptive epidemiological data.

Trained public health professionals (Environmental Health Officers) administered these questionnaires to cases either by face to face interviews or over the telephone.

Hypothesis generation (HG)

A comprehensive hypothesis generation questionnaire was designed. The following types of data were collected: demography; clinical symptoms; contact with animals; recreational exposures; food and drink consumption; food purchasing practices. This was administered by telephone by trained public health professionals to four randomly selected cases of C. parvum in each of the outbreak regions.

All questionnaires were returned to GEZI for analysis. Exposure frequencies were calculated and those recorded in 75% or more cases were considered as hypotheses for testing in an analytical epidemiological study.

Case-control study (CC)

In June 2012 a case control study was undertaken to test the hypotheses generated.


Main null hypothesis: Being a case of C. parvum infection > = 16 years of age in the population at risk is not associated with general shopping preference with any major food retailer (supermarket chain).

Secondary null hypotheses: Being a case of C. parvum infection > = 16 years of age in the population at risk is not associated with consumption of:

  • Bagged salad leaf items;
  • Loose salad leaf items;
  • Live growing salad leaf items;
  • Live growing salad leaf or herb leaf items in pots;
  • Live sprouted salad beans items growing in punnets;
in the ten days prior to onset of illness.

It was originally planned to ask about the name of specific ‘own brand’ salad products. When the case control questionnaire was piloted among friends and family of the public health professionals, it became apparent that very few people could recall whether they had bought a specific proprietary product or whether it was a supermarket own brand. However, they could recall whether it was a single salad vegetable such as watercress, spinach or rocket or whether it was a mixed bag salad and could recall which supermarket they had bought these from.

Case definition

Different case definitions were used for 1. Enhanced surveillance (ES), 2. Hypothesis Generation (HG) and 3. Case-control (CC) parts of the investigation. These were different because they were conducted at different times and when changing information was available. All three restricted investigation to confirmed Cryptosporidium cases aged 16 years or more that were resident in Y&H, NE, EM or WM, although CC also included Scottish cases. Exclusions included any patients with a species other than C. parvum, known secondary cases, people who had recently travelled abroad, or cases known to be part of another cluster of cases. For the ES cases with an onset date on or after 11th May 2012 were included, for the HG cases were chosen with an onset between 11th and 16th May 2012, and for the CC a specimen date of between 11th and 31st May 2012. The HG and CC were only conducted on C. parvum cases. The CC study did not use patients who had been interviewed previously for the HG.

Subject recruitment

The Cryptosporidium Reference Unit (CRU) provided health protection specialists in the four English regions with the complete list of cases of PCR-confirmed C. parvum that conformed to the case definition. The list was ordered by specimen date and a proportionate and systematic sample of cases taken by each area from its own list. A list for Scottish cases was similarly provided by the Scottish Parasite Diagnostic and Reference Laboratory (SPDRL).

One control per case was identified using the systematic digit dialling process after the eligible case had completed a questionnaire, using the land line number of each eligible case interviewed as a starting point. Controls were defined as an adult (16 years or over) resident of the appropriate region identified through the systematic digit dialling process, who had not had vomiting and/or diarrhoea, any foreign travel, or any close contact with a case of diarrhoea, in the ten days prior to the interview.

Sample size

A sample size of 56 C. parvum cases and 56 unmatched controls was calculated to distinguish a significant odds ratio of 4 or more for shopping preference at the risk retailer by the case group, compared to control group, for 15% to 65% shopping exposure by the control group.


Study participants were interviewed via telephone by a trained team of regionally based health protection specialists. Each case plus its associated control was interviewed by the same interviewer wherever possible.

Data entry and analysis

Data were entered into EpiData Entry (Epidata DK. Denmark, EpiData Association, 2000–2010). Files were inputted in each individual outbreak region, using double data entry and validation techniques. Data were exported into Stata for analyses (StataCorp. Stata statistical software: release 12.1. College Station, USA).

Odds ratios (OR) and P-values (Pearson chi-square) for each exposure were calculated. Individual food exposures and combined exposures to any food items bought from different specified retailers were examined, adjusted for age and sex.

Exposures with an estimated odds ratio in excess of 1 and a p-value of 0.2 or less were included in a multivariable logistic regression model.

All models were adjusted for age and sex.

When detailed microbiological typing was available the analysis was repeated for the most common gp60 subtype and for other gp60 subtypes remaining.

Microbiological typing

All Cryptosporidium-positive stools received by the CRU and SPDRL were typed to the species-level in the first instance by real-time PCR incorporating C. parvum-specific primers and probes [9].

  1. All C. parvum isolates were subtyped by sequencing the gp60 gene [10, 11, 12] in order to identify if the increase was due to a particular gp60 subtype.

The outbreak was first detected around 25th May. It became apparent that the exposure was likely to have occurred at the beginning of May and that from the outset all the contaminated product was likely to have been consumed by 25th May. The decision not to sample early suspected foods from Supermarket A was made with input from the Food Standards Agency who had discussions with this supermarket and identified that they sold over 60 different salad products. It was therefore thought to be pointless to sample, because the exact product to sample was unclear, the contaminated product was not available and the methods for sampling for Cryptosporidium were complex. Furthermore, at the time there was no standard method for the detection of Cryptosporidium in any food item.


Laboratory report surveillance

There were marked increases in laboratory reports of Cryptosporidium spp. received by national surveillance for Scotland, Wales and each of the English regions, starting in week 19 (week commencing 7th May 2012) in the reporting of Cryptosporidium spp in individuals aged 16 years or older in both Scotland and England & Wales (Figs 1 and 2). The Scottish cases increased earlier in 2012 than the English cases, although this earlier increase was not thought to be from the same source. This pattern was not seen in previous years or during 2012 for children aged below 16 years. Case numbers began to decline towards the end of the month, with peaks on the 21st to 22nd May 2012. The peak was in week 21 when 252 cases were reported.

Fig 1. Cumulative count of cases of Cryptosporidium sp reported to national surveillance, weeks 1–25 inclusive, England & Wales, 2005–2012.

Fig 2. Cumulative count of cases of Cryptosporidium sp reported to national surveillance, weeks 1–25 inclusive, Scotland, 2005–2012.

There were 648 cases reported in weeks 19–25 in England & Wales (45% of the year’s cumulative total), 462 of which (71%) were in over 16 year olds. In Scotland, there were 134 cases reported in weeks 19–25 (44% of the year’s cumulative total), 88 of which (66%) were in over 16 year olds.

Our analyses of the age distribution showed that between weeks 19 and 25 of 2012 there was an increase in the proportion of cases in individuals above the age of 16 years. (Table 1) Thus the increase in the reporting of cases during this period was mainly attributable to a sharp increase in laboratory reports of Cryptosporidium in older teenagers and adults.

Table 1. Range and median age of cases of Cryptosporidium spp. reported to national surveillance in weeks 19–25 and in the 4 outbreak regions (Yorkshire and Humberside, North East, East Midlands, and West Midlands), 2007–11 and 2012.

Enhanced surveillance

Fig 3 shows the epidemic curve for each Health Protection Unit in the four English Regions affected and for Scotland, based on onset date.

Fig 3. Count of cases of Cryptosporidium sp reported to national surveillance by date of onset of illness, May 2012, England regions and Scotland.

Hypothesis generation

Sixteen questionnaires were administered and returned, four from each region in the outbreak. Preliminary results indicated no link with private water supplies or bottled water/dispensers or animal contact. The following exposures were reported in 75% or more of the cases interviewed, eating salad (n = 16), mixed leaf salad (n = 13), tomatoes (n = 14), cucumber (n = 12), lettuce (n = 12), milk (n = 14), yoghurts (n = 12), bananas (n = 12), raw beef handled in the household (n = 12), preparing raw ingredients (n = 13) and purchasing foods from one particular supermarket chain (Supermarket A) (n = 14).

Milk, yoghurt and beef were discounted because different producers/brands were reported during hypothesis generation, and the items were considered to have come from many different sources, but were still tested in the case control study. Further interrogation of cases’ responses led to the null hypotheses that illness was not associated with any one major food retailer (supermarket chain), or various fresh salad items, including leaves.

Case control study

Seventy four laboratory-confirmed C. parvum cases and 74 controls were included for analysis in the study. Cases were generally younger than controls with 60 (81%) cases being under 50 years-old compared to 22 (30%) controls (p<0.001) (Table 2).

Table 2. Number and percentage of C. parvum cases and controls in each age group (years) participating in the case control study, 2012.

Forty-eight (64%) of the cases and 35 (47%) of the controls were female (p = 0.04).

Single variable analysis results for combined exposures bought from any retailer suggested associations between illness and eating rocket, spinach, water cress, mixed leaves, cherry tomatoes, yoghurt, and handling raw beef / eating beef (Table 3).

Table 3. Case-control single variable analysis results (adjusted for age and gender) for combined exposures to salad vegetables bought from any Supermarket in the previous 10 days.

Single variable analysis results for exposures by retailer showed evidence of association between illness and pre-cut salad items bought from Supermarket A, B and C. 72% of cases reported having consumed salad items bought from Supermarket A in the 10 days before the onset of their illness.

Variables eligible for inclusion in the multivariable regression model were: pre-cut rocket bought from any retailer, pre-cut spinach bought from any retailer, water cress bought from any retailer, pre-cut mixed salad leaves bought from any retailer, cherry tomatoes bought from any retailer. Spinach bought from any retailer was the only combined food variable significantly associated with being a case.

In the multivariable logistic regression analysis pre-cut mixed salad leaves bought from Supermarket A, plum tomatoes from Supermarket B, pre-cut spinach from Supermarket C and milk bought from Supermarket A were significantly associated with illness. (Table 4)

Table 4. Multivariable logistic regression analysis adjusting for gender and age.

6 out of 74 cases (8%) bought plum tomatoes from Supermarket B and 11% (8 out of 73 cases) bought pre-cut spinach from Supermarket C. Greater proportions bought milk at 24% (15 out of 63) and pre-cut mixed leaves at 52% (34 out of 66) from Supermarket A.


Of the 648 cases of cryptosporidiosis reported in England and Wales in weeks 19–25, 312 cases were reported in weeks 20–22 and 289 (93%) of these were identified as C. parvum. The SPDRL speciated 24/134 isolates received from Scottish laboratories in the same time and 20 of these (87%) were identified as C. parvum.

The excess in adult cases in C. parvum was most noticeable in weeks 20–22, whereas C. hominis cases did not change during that time period. Thus there was no evidence for a mixed C. hominis and C. parvum outbreak.

GP60 analysis.

Of 182 confirmed C. parvum cases in the affected English regions and Scotland that were sequenced at the gp60 gene, 142 (78%) were subtype IIaA15G2R1. A total of 63/75 cases recruited to the case-control study were of this predominant subtype.

In multivariable analysis there was a there was strong association with consumption of spinach (pre-cut and whole) bought from Supermarket A, with a higher odds ratio than in the ordinary multivariable analysis. There were also positive associations between eating plum tomatoes bought from Supermarket B, pre-cut spinach bought from Supermarket C, and with milk also bought from Supermarket A. None of these exposures were associated with the other C. parvum subtypes (Table 5).

Table 5. Multivariable logistic regression analysis adjusting for gender and age, by C. parvum gp60 subtype.


Between weeks 19 and 25, 2012, 648 cases of Cryptosporidium spp. were reported across England & Wales and 134 across Scotland with a marked peak between weeks 19 and 21. Cases were predominantly in adults. There was a higher than expected percentage of female cases, although this was not significantly different from the same weeks in previous years. The number of cases reported was greater in some areas than others which may be indicative of differences in distribution of a product. However, we cannot exclude ascertainment differences by region as a contributory factor. The epidemiological investigations support the hypothesis that salad items, particularly from one retailer, were the vehicle for infection.

The most plausible cause of the outbreak from the multivariable logistic regression was pre-cut mixed leaves from Supermarket A, with 51% of interviewees reporting this exposure and a strong odds ratio (7.71 with CI 2.40–24.78) and significance value. The other exposures (Plum tomatoes Supermarket B, Pre-cut spinach Supermarket C, Milk Supermarket A) all represent under 21% of cases, and could be explained by confounding. By this we mean that salad items are more likely to be consumed by people who were eating pre-cut mixed leaves and milk from Supermarket A is more likely to be consumed by people buying pre-cut mixed leaves from Supermarket A. Two of the four exposures showing significance in the model were related to consuming salad vegetables bought pre-cut in sealed bags. This could be indicative of one or more types of salad vegetables having been washed in contaminated water, having been contaminated during handling from the producer or during growing or irrigation.

Our findings are supported by several reports in the literature highlighting contamination of salad items. This has been reported in outbreaks of shiga toxin producing Escherichia coli and salmonella from various parts of the World. [13, 14, 15]. There are risks associated with the contamination of fresh produce either directly from animal dung or indirectly by water used for irrigation and washing, and Cryptosporidium oocysts can be difficult to remove from leaves [5, 16]. The risks of Cryptosporidium transmission from salad products contaminated from irrigation water has previously been described through a survey of fresh salad products [17]. Cryptosporidiosis has previously been linked to raw vegetable consumption in Denmark, Sweden and Finland [18, 19, 20].

The food trace back data in this outbreak revealed that Supermarket A was not the sole recipient of any of the implicated vehicles of infection. There were 61 different salad products supplied by Supermarket A and included leaves from growers in the UK, Spain, Italy and France. It was not possible to identify the exact products people ate or how mixing and batching of produce might have affected the distribution of contaminated salad leaves in the finished bags sold to the public. Confounding cannot be discounted given that salad leaves are often eaten in combination with other items, and recall bias may also affect case and control reports of foods bought i.e. individuals who usually buy their food from other supermarkets omit to mention a one-off purchase from another supermarket. However, food investigations were unable to identify any potential expected confounders and the short duration of the outbreak eliminates suspects such as dressings and oils, which have a longer shelf life. Complexities and limited traceability in identifying patterns of salad vegetable distribution may hinder further investigation of the ultimate sources of these kinds of outbreaks despite thorough investigation [9, 21].

Fresh produce remains a risk for gastro-intestinal illness and recommendations for the investigation of future outbreaks of this nature include coordination between epidemiological and food investigations so that inquiries can be expedited and preliminary findings reported and acted upon. This has been the predominant approach among the most successful and expedient outbreak investigations. In 2004, Swedish authorities notified the finding of Salmonella Thompson in rucola lettuce through the EU Rapid Alert System for Food and Feed, aiding on-going outbreak investigations and supporting the same findings in other countries [10].

UK outbreaks, such as Salmonella Bareilly in 2010, and the large outbreak of Escherichia coli O104:H4 in Germany in 2011 highlight the importance of trace back investigations which can lead to individual suppliers for recall and investigation [22, 23]. This is the largest outbreak of foodborne cryptosporidiosis reported globally and indicates an increased need for awareness of the mechanisms by which protozoa may be transported on salad leaves and the importance of surveillance for Cryptosporidium.


All staff of the Cryptosporidium Reference Unit and the Scottish Parasite Diagnostic and Reference Laboratory.

All members of the outbreak control team including colleagues from the Food Standards Agency, Drinking Water Inspectorate, Yorkshire Water, Local Authorities and NHS Trusts.

Mr Thomas Bjorn, Head of Legal Affairs, Ms Emma Gilgunn-Jones, Chief Press Officer, Professor Mike Catchpole, Director of the Centre for Disease Surveillance and Control, Public Health England for advice and support in finalising the Outbreak Report and communications handling.

Author Contributions

Conceived and designed the experiments: CM GKA GN RG RMC GK PC AC MR KGP CLA SM. Performed the experiments: CM GKA GN RG RMC GK PC AC MR KGP CLA SM. Analyzed the data: CM GKA GN RG RMC GK PC AC MR KGP CLA SM. Contributed reagents/materials/analysis tools: CM GKA GN RG RMC GK PC AC MR KGP CLA SM. Wrote the paper: CM GKA GN RG RMC GK PC AC MR KGP CLA SM.


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