The plant sterol pathway exhibits a major biosynthetic difference as compared with that of metazoans. The committed sterol precursor is the pentacyclic cycloartenol (9β,19-cyclolanost-24-en-3β-ol) and not lanosterol (lanosta-8,24-dien-3β-ol), as it was shown in the late sixties. However, plant genome mining over the last years revealed the general presence of lanosterol synthases encoding sequences (LAS1) in the oxidosqualene cyclase repertoire, in addition to cycloartenol synthases (CAS1) and to non-steroidal triterpene synthases that contribute to the metabolic diversity of C30H50O compounds on earth. Furthermore, plant LAS1 proteins have been unambiguously identified by peptidic signatures and by their capacity to complement the yeast lanosterol synthase deficiency. A dual pathway for the synthesis of sterols through lanosterol and cycloartenol was reported in the model Arabidopsis thaliana, though the contribution of a lanosterol pathway to the production of 24-alkyl-Δ5-sterols was quite marginal (Ohyama et al. (2009) PNAS 106, 725). To investigate further the physiological relevance of CAS1 and LAS1 genes in plants, we have silenced their expression in Nicotiana benthamiana. We used virus induced gene silencing (VIGS) based on gene specific sequences from a Nicotiana tabacum CAS1 or derived from the solgenomics initiative (http://solgenomics.net/) to challenge the respective roles of CAS1 and LAS1. In this report, we show a CAS1-specific functional sterol pathway in engineered yeast, and a strict dependence on CAS1 of tobacco sterol biosynthesis.
Citation: Gas-Pascual E, Berna A, Bach TJ, Schaller H (2014) Plant Oxidosqualene Metabolism: Cycloartenol Synthase–Dependent Sterol Biosynthesis in Nicotiana benthamiana. PLoS ONE 9(10): e109156. https://doi.org/10.1371/journal.pone.0109156
Editor: Christopher Beh, Simon Fraser University, Canada
Received: March 27, 2014; Accepted: September 3, 2014; Published: October 24, 2014
Copyright: © 2014 Gas-Pascual et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Data Availability: The authors confirm that all data underlying the findings are fully available without restriction. All relevant data are within the paper and its Supporting Information files.
Funding: This work was supported by the Centre National de la Recherche Scientifique, the Université de Strasbourg, and the Agence Nationale de la Recherche (grant BIOSIS ANR-06-BLAN-0291-02 to TJB and TERPENE ANR-05-BLAN-0217-01 and 02 to HS and TJB). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
Competing interests: The authors have declared that no competing interests exist.
Plants, algae and some protists synthesize their sterols through a biosynthetic route that contains a pentacyclic steroidal cyclization product of 2,3-oxidosqualene, namely, cycloartenol (9β,19-cyclolanost-24-en-3β-ol, Fig. 1) the product of the cycloartenol synthase (CAS1, EC 220.127.116.11) –. In contrast, other organisms like mammals and fungi use lanosterol (lanosta-8,24-dien-3β-ol, Fig. 1), an isomeric tetracyclic steroidal cyclization product of 2,3-oxidosqualene that is made by the lanosterol synthase (LAS1, EC 18.104.22.168). The post-squalene biosynthetic pathways leading to Δ5-sterols from cycloartenol or from lanosterol have been described comprehensively with respect to the enzymes implicated and to the chemistry of the reactions considered –. However, the rationale of the conserved biosynthetic detour through 9β,19-cyclopropyl sterol intermediates in plants, algae and protists is not understood . Higher plants have in addition the capacity to produce a huge array of mostly dispensable non steroidal 2,3-oxidosqualene cyclization products (for instance β-amyrin, Fig. 1) generated by various triterpene synthases that have been classified into multiple families , . The distribution of a representative set of oxidosqualene cyclases (OSCs) in a phylogenetic tree gives a clear view of main groups (Fig. 2, Table S1). The nearly ubiquitous presence of β-amyrin synthases and lupeol synthases that form one large group indicates that some triterpenes of the oleanane or lupane series may have a general physiological significance beyond the species-specific well-known accumulation of triterpene derivatives, such as saponins in Gypsophila trichotoma . This has been described recently in a series of studies describing the effect of triterpene lipids on the structure of cuticular lipophilic barriers in Arabidopsis thaliana , or the role of these triterpenes as epicuticular crystals in the mediation of plant-insect interactions in a species-specific manner . In addition, functional approaches in planta have assigned specific roles for some of these triterpene synthases in the production of β-amyrin as a precursor of phytoanticipins like the avenacin saponins in oat . CAS1 proteins cluster into distinct entities indicating their appartenance to land plants, algae, or protists (Fig. 2). A distinct group of proteins is formed by OSCs that have been characterized as LAS1 from plants owing to the complementation of the yeast lanosterol synthase deficient erg7 mutant . The biochemical characterization of a wealth of triterpene synthases (or OSCs) isolated from many different plant species revealed in addition to CAS1 and OSCs that produce triterpenoids of diverse structure, the general presence of LAS1 in the plant OSCs repertoire , . The increasing number of genome sequences available in the databases is constantly reinforcing this fact. The contribution of a lanosterol pathway to the production of 24-alkyl-Δ5-sterols was shown to be marginal even upon strong expression of LAS1 in transgenic Arabidopsis thaliana . Moreover, the contribution of lanosterol as a precursor of natural products remains unclear until now . In fact, lanosterol has been only detected in large amounts in the latex of Euphorbia species . The restriction of this sterol precursor to the complex Euphorbia genus has not yet received any functional explanation. It is nonetheless worth noting that 2-tritio lanosterol and 2-tritio cycloartenol when fed to Sorghum bicolor leaves were converted to cholesterol and sitosterol eventhough cycloartenol was a more effective sterol precursor than lanosterol . Thus, the presence of a lanosterol metabolism in plants, possibly related to phytosterol biosynthesis, deserves further investigations.
1, β-amyrin (olean-12-en-3β-ol); 2, cycloartenol (9β,19-cyclolanost-24-en-3β-ol); 3, lanosterol (lanosta-8,24-dien-3β-ol). βAMS, β-amyrin synthase; CAS1, cycloartenol synthase; LAS1, lanosterol synthase.
The distance between each sequence was calculated using the program CLUSTAL W. The phylogenetic tree was drawn using Phylodendron online tool (http://iubio.bio.indiana.edu/treeapp/treeprint-form.html). Scale represents 0.1 amino acid substitutions per site. Protein clusters are enhanced by colors as follows: red and orange, β-amyrin and promiscuous β-amyrin synthases, dark red, lupeol synthases; blue, plant lanosterol synthases; green, plant cycloartenol synthases; brown, cycloartenol synthases from algae or a planctomycete, and yellow, cycloartenol synthases from protists. Abbreviations and accession numbers are given in Table S1. All proteins displayed in the phylogenetic tree have either been functionally characterized or genome annotated (except CAS1 from Salpingoeca sp, Allium macrosternom, Avena strigosa, Avena ventricosa and Luffa cylindrica, which have been annotated based on sequence homology and/or expression evidence).
The essential role of CAS1 in sterol biosynthesis and plant development was demonstrated by a series of Arabidopsis thaliana hypomorphic or conditional alleles . Such plants developed an albino phenotype in tissues that undergo active cell division and elongation such as leaf margins and apices. The negative effect upon plastid development was strictly coincidental with an accumulation of 2,3-oxidosqualene. The CAS1-dependent sterol biosynthetic segment consists of a succession of 4 enzymatic steps leading from cycloartenol to cycloeucalenol (Fig. S1). This upstream segment is connected with the downstream segment leading to 24-alkyl-Δ5-sterols by the enzyme CPI (cyclopropyl isomerase, EC 22.214.171.124), being able to isomerize cycloeucalenol into the tetracyclic 4α-methyl sterol, obtusifoliol , . Obtusifoliol is further converted into phytosterols in a way that is reminiscent of the conversion of lanosterol to ergosterol in metazoans , . This CAS1 segment is highly conserved in photosynthetic organisms and beyond, in protists. The strong phenotype of an Arabidopsis thaliana cpi1-1 mutant indicates that a normal life span cannot be attained with the CAS1 biosynthetic segment only , although growth of cells  and to a limited extent of plants with 9β,19-cyclopropylsterols  have been reported.
The co-existence of functional CAS1 and LAS1 in plants requires further studies. So far, in planta characterization of CAS1 and LAS1 was restricted to Arabidopsis thaliana. In order to further document dual cycloartenol and lanosterol pathways in higher plants we have isolated a CAS1 from Nicotiana tabacum and studied its function in yeast and in Nicotiana benthamiana. We used virus induced gene silencing (VIGS) based on gene specific sequences derived from the solgenomics initiative (http://solgenomics.net/) to challenge the respective roles of CAS1 and LAS1 in Nicotiana benthamiana. In this report, we show a strict dependence on CAS1 of tobacco sterol biosynthesis.
Results and Discussion
Genes and cDNAs encoding 2,3-oxidosqualene cyclases (OSCs) in Nicotiana tabacum and Nicotiana benthamiana
We surveyed the genome databases to identify Nicotiana orthologs of CAS1 and LAS1. We then cloned a Nicotiana tabacum CAS1 cDNA by recursive PCR using degenerated primers over conserved sequences. Primers used for that cloning procedure are given Table S2. The full length cDNA encoded a 2856 bp open reading frame displaying 78% identity with AtCAS1 and consequently was named NtCAS1 (GenBank accession KM452913). We next identified in the genome of Nicotiana benthamiana (http://solgenomics.net/) two genes whose products had 70% and 58% identity with AtCAS1 and AtLAS1, respectively. Relevant sequences identified in Nicotiana and in other Solanaceae are given in Table S3. It is worth noting that probing the genome of Nicotiana benthamiana with the functionally identified tomato triterpene synthases  resulted in the identification of a predicted protein (NbS00041716g0004.1) that exhibited 85% identity with the tomato β-amyrin synthase and 77% with the Arabidopsis thaliana β-amyrin synthase (Table S3). The presence of a putative β-amyrin synthase gene in the Nicotiana benthamiana genome certainly requires further investigations to determine its physiological relevance since β-amyrin has not been detected in Nicotiana benthamiana leaves in normal physiological conditions . The simple structure of the OSC gene family in Nicotiana benthamiana makes this plant an excellent model to further investigate functional aspects related to CAS1 and LAS1 genes.
We cloned by RT-PCR a cDNA fragment from N.benthamiana leaf RNA, that corresponded to an expressed NbLAS1 (Table S3), confirmed by qRT-PCR analysis. The alignement of amino acid sequences of CAS1 and LAS1 from Nicotiana tabacum, N.benthamiana, Solanum lycopersicon and Capsicum annuum (Fig. 3) shows features that support the identification of CAS1 and LAS1 sequences in these solanaceae. In fact, these two enzymes have been studied extensively. Molecular evolution and site-directed mutagenesis experiments revealed important aminoacid residues and conserved motifs that govern the cyclization of OSC into cycloartenol or into lanosterol. All CAS1 enzymes have a strict requirement for His477 and I481 (Arabidopsis numbering) in the vicinity of the conserved DCTAE motif implicated in substrate protonation, whereas all LAS1 proteins have a strict requirement for a V481 (Fig. 3) , . A thorough analysis of the cyclization reactions, which required the heterologous expression of the plant CAS1 or LAS1 enzymes in the yeast erg7 (lanosterol-deficient) mutant led to a current understanding of the catalytic differences in both reactions .
At, Arabidopsis thaliana; Nt, Nicotiana tabacum; Nb, Nicotiana benthamiana; Sl, Solanum lycopersicon; Ca, Capsicum annuum. Dashes are for gaps that maximize the alignment made with GeneDoc . Conserved residues are highlighted in black or grey. The DCTAE motif is boxed (in green for CAS1; in red for LAS1). Important catalytic residues specifying cyclization of 2,3-oxidosqualene into cycloartenol or lanosterol are marked with arrowheads (Tyr 410, His 477 and Ile 481, Arabidopsis thaliana numbering). A terpene synthase signature DGSWyGsWAVcFtYG is underlined.
Functional characterization of CAS1 and LAS1 in Nicotiana benthamiana
To ascertain the function of CAS1 and LAS1 in N. benthamiana, we silenced the corresponding genes in expanding leaves of young plants using VIGS. For this we cloned gene-specific cDNA fragments of NtCAS1 and NbLAS1 into a PVX-based vector. Transcripts generated from PVX, PVX::CAS1, and PVX::LAS1 constructs were then inoculated into leaves by wounding. Visual inspection of inoculated plants showed very clearly the appearance of a strong phenotype for PVX::CAS1 plants. The first effects on growth were a general reduction of plant stature and a leaf bleaching that was prominent on veins (Fig. 4A). In the most severe cases, plant leaves and other tissues that had developed after the inoculation of the PVX transcripts to the first and second leaf pair displayed a strong wilting and necrotic zones (Fig. 4B). This impaired any further growth and development. Conversely, PVX::LAS1 plants had a lifespan and morphological aspect identical to PVX- or mock-inoculated plants (Fig. S1). Gene expression analysis carried out by RT-qPCR indicated a massive accumulation of the viral transcripts PVX::CAS1 and a reduction of the endogenous CAS1 messenger RNA in PVX::CAS1 plants (Fig. 4C). Closely similar results were obtained for the expression of LAS1 that was reduced in PVX::LAS1 plants concurrently to a huge load of viral PVX::LAS1 transcripts (Fig. 4D). Next, measurements of squalene-derived products by gas chromatography revealed an accumulation of 2,3-oxidosqualene ranging from 0.5 up to 1 milligram per gram dry weight in PVX::CAS1 leaf tissue, whereas the amount of that OSC substrate remained undetectable in PVX::LAS1 plants, as it was the case for control PVX or mock plants (Fig. 4E). Total sterols decreased in PVX::CAS1 plants, consistent with a blockage of a biosynthetic step upstream to cycloartenol (Fig. 4F). In contrast, the analysis by GC-MS of the sterol composition of PVX::LAS1 plants did not show major changes when compared to control plants, indicating no major role of LAS1 in sterol accumulation in N. benthamiana. In this study, quantification of both cycloartenol and lanosterol were attempted. Only trace amounts of cycloartenol were detected in some of the control samples analyzed in Fig. 4F and Fig. S2 (data not shown) but were often below the limit of detection. Finally, GC-MS analysis revealed in PVX::CAS1 plants a very small amount of β-amyrin (Fig. S3). This is strongly in favour of the existence of a true β-amyrin synthase otherwise found as a gene sequence in the N. benthamiana genome (NbS00041716g0004.1, Table S3). The fact that 2,3-oxidosqualene strongly accumulated in PVX::CAS1 leaf tissues most probably allowed this β-amyrin synthase to access to a pool of that substrate. It is worth noting that such a strong accumulation of 2,3-oxidosqualene precludes reliable enzymatic analyses using subcellular fractions.
A, Morphological phenotype of PVX (left) and PVX::CAS1 (right) plants 4 weeks after inoculation, the close-up shows bleaching of veins. B, Morphological phenotype of PVX (left) and PVX::CAS1 (right) plants 5 weeks after inoculation, the close-up shows leaf wilting and necrosis. C, Relative gene expression in PVX::CAS1 plants, CAS1 is a measurement of the endogenous NbCAS1 level, PVX::CAS1 is a measurement of the viral NtCAS1 transcript. D, Relative gene expression in PVX::LAS1 plants, LAS1 is a measurement of the endogenous NbLAS1 level, PVX::LAS1 is a measurement of the viral NbLAS1 transcript. E, squalene epoxide amounts measured by GC-FID in silenced plants. F, sterol composition of PVX and PVX::CAS1 plants. Structure of the compounds detected here are shown in Fig. S1. The pictures in A and B are representative of 4 independent experiments that included all 3 plants inoculated with each type of viral transcripts.
NtCAS1 defines a functional protist/plant sterol pathway in yeast
The functional identification of NtCAS1 as encoding a cycloartenol synthase was further performed by its expression in the yeast mutant erg7 that lacks an endogenous lanosterol synthase . Upon galactose-induced expression of NtCAS1, yeast cells grown in the presence of exogenous ergosterol displayed a sterol profile (Fig. 5A and B) that included cycloartenol (peak 3) and four other sterols (peaks 4 to 7) in addition to ergosterol (peak 2). The major sterol was 24-methylene pollinastanol (peak 7) that accounted for 53% of the total and represented the most probable pathway end-product generated by the yeast steroidogenic machinery, apparently being versatile enough to accept cycloartenol as a substrate. The most probable sterol pathway of erg7::NtCAS1 is shown in Fig. 5C. Cycloartenol is demethylated at C-4 by the demethylation complex  to produce 31-nor-cycloartenol, which is further taken by the sterol-C24-methyltransferase (ERG6) to produce cycloeucalenol (peak 4) or by the C-4 demethylation complex to remove the second methyl group at C-4 to yield 24-methylene pollinastanol (peak 7). The favored grid of possible interconversions presented in Fig. 5C is in agreement with previous work done with exogenously cycloartenol-fed yeasts  or more recently with the expression of a rice CAS1 in yeast, this to a certain extent . The absence of 24-methylene cycloartanol (the direct product of a possible action of ERG6 on cycloartenol) may indicate that the recruitment of the yeast C4-demethylation enzyme complex (ERG25, ERG26, ERG27 and ERG28) occurs prior to the side chain alkylation, or that 24-methylene cycloartanol has a rapid turnover . As it is the case for all enzymatic conversions implied in this pathway, the methylation at C24 was partial, which may explain the identification of 24-dehydropollinastanol as well (peak 6). Interestingly, no sterols bearing a reduced side chain at Δ24 were detected, indicating a probable exclusion of ERG4, the yeast Δ24-reductase, from the cellular compartment involved in the yeast 9β,19-cyclopropylsterol biosynthesis. In this respect, it was demonstrated over the last years that the yeast sterol biosynthetic segments are seemingly localized in distinct compartments, of which the lipid droplets are major players in hosting ERG6, ERG7 and the C-4 demethylation complex . Thus, the sterol biosynthetic features of erg7::NtCAS1 were identical to the 9β,19-cyclopropylsterol biosynthetic segment of protists, algae, or plants. Cell cultures of these latter biological models were shown to grow, albeit partially, only with that biosynthetic segment, as seen after chemical inhibition of the cyclopropyl isomerase that links the 9β,19-cyclopropylsterol biosynthetic segment to the downstream tetracyclic segment of the sterol pathway . Indeed, those eukaryotic cells could live with 4,4-demethylated cycloartenol derivatives such as 24-methylene- and 24-methyl-pollinastanol. For these reasons, the growth of erg7::NtCAS1 was examined on a minimal selective medium in the presence or absence of ergosterol (Fig. 6). Growth assessment performed as spotting assays was made after five days. In the presence of ergosterol, erg7 or erg7::NtCAS1 displayed a closely similar growth profile along a range of dilutions, whereas in the absence of ergosterol, only erg7::NtCAS1 was able to grow significantly when compared to erg7. The growth was however slowed down as shown by the significantly reduced spots. This reinforces previous studies showing that cycloartenol cannot support growth of yeast unless it has been metabolized to C-4 desmethyl sterols such as 24,25-dehydropollinastanol . Such result was in agreement as well with previous observations  about 9β,19-cyclopropylsterols being good surrogates to tetracyclic Δ5-sterols (cholesterol, ergosterol, sitosterol) in a way that they do not prevent a yeast cell or a plant cell to divide. Nonetheless, cellular and morphogenetic inhibitions of multicellular organisms depleted in 24-alkyl-Δ5-sterols were severe , .
A, TIC of a total unsaponifiable extract of erg7 transformed with a void vector. B, TIC of a total unsaponifiable extract of erg7::NtCAS1. C, 9β,19-cyclopropylsterol biosynthetic pathway in yeast. Compounds are: 1, 2,3-oxidosqualene; 2, ergosterol; 3, cycloartenol; 4, 31-norcycloartenol; 5, 24-dehydropollinastanol; 6, cycloeucalenol; 7, 24-methylene pollinastanol. Compounds are identified according to their mass spectra and to those of authentic standards for 3, 6, and 7 purified from plant material as previously described , , . Peaks that are not numbered are not sterols.
Growth of gil77 yeast strain transformed with the pYeDP60 vector or pYeDP60-NtCAS1 was tested on SGal medium supplemented or not with 20 µg/ml of ergosterol. After 5 days at 30°C, plates supplemented with ergosterol showed fully-grown colonies, whereas inductive conditions (SGal without ergosterol) allowed only limited growth of yeast expressing NtCAS, indicating however that NtCAS1 expression partially overcomes ERG7 deficiency.
VIGS is a powerful tool to challenge the biological function of genes . The most popular model plant that is currently the VIGS workhorse for biochemical studies is Nicotiana benthamiana (http://bti.cornell.edu/nicotiana-benthamiana/). Specific silencing of genes , analysis of plant-pathogen interactions mediated by sphingolipid biosynthesis , and genetic screens  have been described. We show here using VIGS that the tobacco cycloartenol synthase gene CAS1 encodes the only OSC essential to sterol biosynthesis. Its decreased expression results in impaired development, bleaching of leaf veins, severe leaf wilting, vegetative and reproductive development arrest. This is in full agreement with previous studies that demonstrated the vital role of CAS1 in Arabidopsis thaliana owing to a genetic mosaic analysis . Furthermore, the morphogenetic inhibition developed by PVX::CAS1 Nicotiana benthamiana leaves is closely similar to the severe stunting of PVX::CYP51 plants, due to a lack of 24-alkyl-Δ5-sterols upon inhibition of NtCYP51 that encodes obtusifoliol-14-demethylase . However, the strong albinism that characterized leaf veins at the onset of silencing remained typical of PVX::CAS1, indicating a strict requirement of cycloartenol derivatives for proper development. Interestingly, a CAS1-dependent sterol biosynthesis supported yeast growth to a limited extent, that may indicate common features of plant and yeast cellular functions exerted by 9β,19-cyclopropylsterols. Finally, this work points out the mostly dispensable nature of LAS1 in Nicotiana benthamiana.
Materials and Methods
RT-PCR cloning of cDNAs
Total RNAs from 7-day-old TBY-2 cells or from Nicotiana benthamiana young leaves were extracted and purified with Trizol reagent (Invitrogen) or with the NucleoSpin RNA Plant kit (Macherey-Nagel), following the manufacturer's recommendations. NtCAS1 full length cDNA obtained by recursive PCR cloning (primers in Table S2) was subcloned in pBluescript vectors and sequenced according to standard molecular biology methods.
Virus-Induced Gene Silencing
Potato Virus X vectors were engineered to achieve the silencing of Nicotiana benthamiana CAS1 and LAS1 genes. A 1 kb fragment of the NtCAS1 cDNA (nucleotides 958 to 2023 of the CDS, GenBank accession KM452914) was obtained by EcoRV digestion of the pBluescript::NtCAS1 cloning vector. A 0.45 kb fragment designed from the first 470 nucleotides of the NbLAS1 cDNA retrieved from the solgenomics database (http://solgenomics.net/, NbS00053226g0006) was isolated by RT-PCR using primers 5′-GGGAAACGAACCGTGGG-3′ (forward) and 5′-GGTGAACACAGTGTTATCA-3′ (reverse) formatted directionally into ClaI and SalI, respectively (GenBank accession KM452915). Purification and subcloning of cDNA fragments was done according to standard cloning procedures. The 1 kb CAS1 fragment was inserted into the EcoRV site of the pP2C2S vector , the 0.45 kb LAS1 fragment was subcloned into the ClaI (5′ end) and SalI (3′ end) sites of the same vector. To generate high amounts of PVX-derived transcripts, pP2C2S constructs (10 µg) were linearized via SpeI restriction and used as template for an in vitro transcription reaction that was done with the Ribomax large scale RNA production system T7 kit (Promega). Transcript formation was followed by UV spectrophotometry. N. benthamiana plants that had two pairs of true leaves were inoculated with a PVX-derived transcript preparation made of 5 µg of RNAs in 50 mM phosphate buffer containing 0.05% macaloid and 10 µg of yeast total RNA, in a final volume of 250 µL. Formulated RNAs were dropped over four leaves of a plant previously covered with little amounts of abrasive celite powder. Gentle scratching of leaves favored the infection of leaf tissues with PVX-derived RNAs.
Total RNAs were extracted from leaf material using Trizol reagent (Invitrogen), following the manufacturer's recommendations. Template cDNAs for gene expression measurements were prepared by a RT reaction carried out on 1 µg of total RNAs and 200 ng of random hexamers in a final volume of 20 µL. Real-time qPCR reactions were run in a final volume of 20 µL containing gene specific primes (5 µM), 1 µL of a 20-fold dilution of a RT reaction, and 2× SYBRGreen mix (Eurogenetech). Amplification reactions were monitored with the GeneAmp5700 instrument and the SDS detection software (Applied Biosystems). Primers for PVX::NtCAS1, endogenous NbCAS1 (http://solgenomics.net/, NbS00021029g0013), PVX ::NbLAS1, endogenous NbLAS1, and NtACTIN as a reference gene are given in Table S2. Primers were designed with Primer3 publicly available software then validated according to standard qPCR requirements (standard curves for PCR efficiency, amplification dissociation curves for specificity).
NtCAS1 cDNA was subcloned into the pYeDP60 yeast expression vector via EcoRI/BamHI restriction sites. Lanosterol synthase (ERG7) deficient gil77 yeast strain  was transformed either with the empty vector or with the NtCAS1 construct. Saccharomyces cerevisiae transformations were performed using the lithium acetate procedure as described previously . Transformed erg7 yeast strains were selected for uracil prototrophy and grown at 30°C in the presence of exogenous ergosterol (5α-ergosta-5,7,22-trien-3β-ol, Sigma, 20 µg/mL). Expression of the inducible gene construct was turned on by culturing transformed yeast into a minimal medium supplemented with ergosterol and galactose (2%) for 1 day.
Yeast spotting assays
Isolated colonies of either pYeDP60 void vector or pYeDP60-NtCAS1 were grown overnight in minimal liquid medium (SGI supplemented with ergosterol). Cells were harvested, washed and resuspended in sterile water to reach an OD600 = 1. Serial dilutions as 1∶10, 1∶100, and 1∶1000 were prepared in water and 5 µL each were spotted onto inductive minimal medium (SGal) plates either supplemented or not with exogenous ergosterol (20 µg/ml), and grown at 30°C for 5 days.
Sterol and triterpene extraction and analysis
Freeze-dried yeast or plant samples (50 to 100 mg) were saponified for one hour in a 6% potassium hydroxyde methanolic solution at 80°C. The unsaponifiable fraction was extracted with hexane then filtrated through a 0.45 µm PFTE membrane (Pall Life Sciences). The dried extract was acetylated in toluene with a mixture of pyridine/acetic anhydride. After evaporation of the reagents, a known amount of betuline diacetate was added as an internal standard for GC-based quantification. Compound quantification included a t-test calculation. GC-FID used for quantification was performed with a 3400CX gas chromatograph (Varian) equipped with a DB-5 column (30 m wall-coated open tubular, 0.32 mm i.d., 250 µm film thickness, H2 flow rate 2 mL/min). The temperature of the injector and detector was 250°C and 300°C, respectively. Compounds were identified by GC-MS using a 5973N instrument (Agilent) equipped with a DB5-MS column and coupled to a 6853 mass analyser (Agilent). The temperature program of ovens included a steep ramp at 30°C/min from 60°C to 220°C then a 2°C/min increase from 220°C to 300°C. Sterols were unequivocally identified by coincidental retention time and identical EI-MS spectra at 70 eV like reference compounds as described .
Plant sterol biosynthetic pathway. The biosynthetic segment framed in red is the so-called 9β,19-cyclopropylsterol segment that requires four enzymes from cycloartenol : SMT1, cycloartenol-C24-methyltransferase [S1]; SMO1, sterol methyl oxidase 1 [S2]; 3βHSD/D, 3β-hydroxysteroid/C4-decarboxylase [S3]; SR, sterone reductase [S4]. The CPI1, cyclopropyl isomerase, links the 9β,19-cyclopropylsterol biosynthetic segment to the metazoan-type sterol pathway that leads to 24-alkyl-Δ5-sterols (campesterol and sitosterol). Uncomplete methylation of the sterol side chain by SMT1 leads to the cholesterol pathway (not shown here for clarity of the figure).
Morphological phenotype of (A) PVX::LAS1 and (B) PVX::CAS1 plants 4 weeks after inoculation. The picture is representative of 4 independent experiments that included all 3 plants inoculated with each type of viral transcripts. The distribution of sterols in control PVX, PVX::CAS1 or PVX::LAS1 is shown in (C).
GC-MS analysis of PVX, PVX ::LAS1, and PVX ::CAS1 unsaponifiable acetylated extracts showing the presence of β-amyrin only in PVX ::CAS1. TIC between 22 min and 39 min are shown for (A), PVX; (B), PVX ::LAS1, (C), PVX ::CAS1. Compounds (as acetate derivatives) are : 1, cholesterol; 2, campesterol (the shouldering peak is 24-methylene cholesterol); 3, stigmasterol; 4, sitosterol; 5, isofucosterol; 6, 2,3-oxidosqualene; 7, β-amyrinat RT = 37,8 min. The mass spectrum of peak 7 and of authentic β-amyrin is shown in (D). β-amyrin has a mass spectrum with a typical ratio of m/z = 203 to m/z = 218 as discussed in supplemental reference [S5].
Gene nomenclature and protein references used to generate Figure 2.
Primers used for NtCAS1 cloning and for qPCR measurements of CAS1 and LAS1.
The Solanaceae OSC signatures and gene references.
We warmly thank Dr. Pascaline Ullmann, Université de Strasbourg, for helpful advices in yeast transformation, and Prof. Yutaka Ebizuka for the Saccharomyces cerevisiae GIL77 strain.
Conceived and designed the experiments: EGP TJB HS. Performed the experiments: EGP AB. Analyzed the data: EGP HS. Wrote the paper: EGP HS.
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