Leishmania are protozoan parasites that proliferate within the phagolysome of mammalian macrophages. While a number of anti-oxidant systems in these parasites have been shown to protect against endogenous as well as host-generated reactive oxygen species, the potential role of enzymes involved in the repair of oxidatively damaged proteins remains uncharacterized. The Leishmania spp genomes encode a single putative methionine sulfoxide reductase (MsrA) that could have a role in reducing oxidized free and proteinogenic methionine residues. A GFP-fusion of L. major MsrA was shown to have a cytoplasmic localization by immunofluorescence microscopy and subcellular fractionation. An L. major msrA null mutant, generated by targeted replacement of both chromosomal allelles, was viable in rich medium but was unable to reduce exogenous methionine sulfoxide when cultivated in the presence of this amino acid, indicating that msrA encodes a functional MsrA. The ΔmsrA mutant exhibited increased sensitivity to H2O2 compared to wild type parasites and was unable to proliferate normally in macrophages. Wild type sensitivity to H2O2 and infectivity in macrophages was restored by complementation of the mutant with a plasmid encoding MsrA. Unexpectedly, the ΔmsrA mutant was able to induce normal lesions in susceptible BALB/c indicating that this protein is not essential for pathogenesis in vivo. Our results suggest that Leishmania MsrA contributes to the anti-oxidative defences of these parasites, but that complementary oxidative defence mechansims are up-regulated in lesion amastigotes.
Citation: Sansom FM, Tang L, Ralton JE, Saunders EC, Naderer T, McConville MJ (2013) Leishmania major Methionine Sulfoxide Reductase A Is Required for Resistance to Oxidative Stress and Efficient Replication in Macrophages. PLoS ONE 8(2): e56064. https://doi.org/10.1371/journal.pone.0056064
Editor: Ben L. Kelly, Louisiana State University, United States of America
Received: August 28, 2012; Accepted: January 4, 2013; Published: February 20, 2013
Copyright: © 2013 Sansom et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Funding: This work was supported by the National Health and Medical Research Council (http://www.nhmrc.gov.au/), under project grant APP1006023. FMS is a NH&MRC Peter Doherty Australian Biomedical Fellow. MJM is a NH&MRC Principal Research Fellow. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
Competing interests: The authors have declared that no competing interests exist.
Leishmania parasites are sand fly-transmitted protozoa that cause a spectrum of diseases in humans, ranging from localized cutaneous lesions to disseminating mucocutaneous and visceral infections . More than 350 million people are at risk of infection worldwide, with an estimated 1.5 to 2 million new cases per year. Visceral leishmaniasis is associated with high mortality and an estimated 50,000 deaths each year . While there have been recent advances in treatment options, current front line anti-leishmania therapies are limited by their high cost, limited availability and/or toxicity and the widespread resistance in endemic areas .
Leishmania develop as extracellular promastigotes in the mid-gut of the Phlebotomine sand fly vector. Non-dividing metacyclic promastigotes that accumulate in the sandfly mouthparts are injected into the mammalian host when infected, female sandflies take a blood meal and are phagocytosed by host macrophages, either directly or after passage through neutrophils . Phagocytosed promastigotes are delivered to the mature phagolysosome compartment of macrophages where they differentiate to the non-motile, obligate intracellular amastigote stage . Both developmental stages are likely to be exposed to oxidative stresses. In the sandfly mid-gut, reactive oxygen species (ROS) are likely to be generated during the digestion of blood hemoglobin, while in the mammalian host, ROS are generated during parasite invasion of naïve macrophages and in immune-activated host cells. Leishmania combat these stresses via a number of different and well-studied mechanisms. For example, invading promastigotes and amastigotes have been shown to actively inhibit recruitment of the NADPH oxidase complex to the phagolysosome membrane and to express a number of surface glycoconjugates and intracellular proteins that either scavenge extracellular and/or neutralize intracellular ROS species –. The latter include multiple isoforms of superoxide dismutase , ascorbate peroxidase –, pteridine reductase ,  as well as enzymes involved in the synthesis and regulation of the major cellular thiols, trypanothione and ovathiol , –. Genetic disruption of most of these enzymes leads to partial or complete attenuation of parasite growth and survival in the mammalian host –.
In contrast to the mechanisms listed above, nothing is known about oxidative defense mechanisms that involve the repair of damaged proteins. Methionine, a sulfur-containing amino acid, is particularly vulnerable to oxidative damage and, in organisms such as yeast and E. coli, mechanisms exist to reverse oxidized methionine. The product of methionine oxidation, methionine sulfoxide (MetO), exists as two epimers, methionine-(S)-sulfoxide (Met-S-O) and methionine-(R)-sulfoxide (Met-R-O) , and three separate repair enzymes, known as methionine sulfoxide reductases (Msr) have been identified. Methionine sulfoxide reductase A (MsrA) acts on both free and protein-bound Met-S-O , methionine sulfoxide reductase B (MsrB) primarily repairs protein-bound Met-R-O  and methionine sulfoxide reductase C (MsrC) is able to reduce free Met-R-O , . Of these enzymes MsrA is perhaps the best characterized, and is involved in resistance to oxidative stress and virulence for a number of bacteria including Salmonella , Enterococcus faecalis  and Mycoplasma genitalium , . The related trypanosomatid parasite, Trypanosoma cruzi, has recently been shown to express a functional MsrA that confers increased resistance to oxidative stress when overexpressed in pathogenic stages . However, the potential role of MsrA enzymes in the pathogenesis of T. cruzi or other protozoan parasites remains unknown. Here, we provide evidence that L. major encodes a functional MsrA and have investigated its role in resistance to oxidative stress, intracellular replication and parasite virulence within a mammalian host.
Identification of the Leishmania Gene Encoding a Putative MsrA Enzyme with a Non- Classical Catalytic Site Sequence
Analysis of the L. major strain Friedlin genome with the NCBI BLAST suite of programs  revealed the presence of a single open reading frame, LmjF07.1140, encoding a protein with 40% identity to human MsrA and 38% identity to MsrA from E. coli. Based on the analyses described below, we refer to this gene as msrA and the encoded protein as LmMsrA. Alignment of the predicted amino acid sequence with putative and known MsrA enzymes from other trypanosomatids revealed that LmMsrA is highly conserved across different species of Leishmania with greater than 90% identity between L. major, L. infantum, L. donovani and L. mexicana MsrA homologues (Figure 1). The sequence similarity with the more evolutionary divergent Leishmania species, L. braziliensis, was 76%, and lower identity (59–64%) was observed to MsrA enzymes from the related Trypanosoma parasite species. Intriguingly, all of the Leishmania MsrA sequences contained a single amino acid substitution within the catalytic site, in which a tyrosine residue that has been shown to be critical for enzymatic activity in other eukaryotic and bacterial MsrA  was replaced with a phenylalanine residue (GCYWG to GCFWG) (Figure 1). This sequence change was not observed in the T. cruzi or T. brucei msrA homologues. Genes encoding a putative MsrB enzyme (LmjF28_2660) and a putative MsrC (LmjF23_1460) enzyme, with 37% and 39% identity to E. coli MsrB and MsrC, respectively, were also identified in these analyses. As studies in other microbial pathogens have highlighted the role of MsrA in pathogenesis , , , we focused our studies on defining the potential role of this enzyme in L. major.
The catalytic site is boxed, and the non-conserved residue within the site marked by an *. The degree of amino acid conservation is indicated by shading intensity. Sequence alignment was performed using ClustalW ,  and the resulting alignment viewed and edited using JalView software . The following sequence accession numbers were used: L. major XP_001681026.1, L. donovani CBZ31842.1, L. infantum XP_001463331.1, L. mexicana CBZ23737.1, L. braziliensis XP_001562615.1, T. brucei XP_846892.1, T. cruzi XP_814806.1, Homo sapiens AAG09689.1, E. coli YP_001746621.1.
MsrA of L. major is Localized to the Cytoplasm of the Parasite and is not Essential for Parasite Viability
MsrA has been localized to both the cytosol and organellar compartments of eukaryotic cells , . The LmMsrA amino acid sequence lacks conspicuous organelle targeting signals, indicating a possible cytoplasmic localization. To confirm the localization of this protein, an LmMsrA-GFP fusion protein was expressed in L. major promastigotes. As expected, episomal expression resulted in production of a 47 kDa protein, the expected size, as detected by Western blotting using an anti-GFP antibody (Figure 2A). No GFP breakdown by-product was observed in the cells expressing pXG-msrA-GFP. Consistent with the lack of targeting signals, epifluorescent microscopy of live parasites revealed a cytosolic location for LmMsrA, with bright green fluorescence distributed evenly through the cytoplasm (Figure 2C). To confirm the absence of low level organellar targeting that might be masked by the strong cytoplasmic localization, L. major promastigotes expressing the fusion protein were lyzed and organellar fractions separated from cytosol by differentiation centrifugation. As shown in Figure 2B, full length LmMsrA-GFP was recovered in the cytosolic fraction. In contrast, the organellar marker, FBP, was only detected in pellet fractions (Figure 2B). These results suggest that L. major MsrA is exclusively localized in the cytosol, as has been proposed for an isoform of T. cruzi MsrA .
A. Whole cell lysates of L. major transfected with pXG-‘GFP alone (Lane 1) or with pXG-msrA-GFP (lane 2) were analyzed by SDS-PAGE and proteins detected by Western blot using the anti-GFP antibody. Approximate molecular weights are as indicated. Cells transfected with pXG-‘GFP alone express a 28 kDa band corresponding to GFP alone, whereas cells transfected with pXG-msrA-GFP express the 47 kDa MsrA-GFP fusion protein. Similar non-specific cross reaction with a higher molecular weight band (arrow head) indicates equal sample loading. B. L. major promastigotes transfected with pXG-msrA-GFP were lysed and subjected to differential centrifugation. Fractions were probed with anti-GFP (top panel), then reprobed with anti-FBP (bottom panel) to confirm the integrity of organelles following cell lysis. Lane 1, whole cell lysate; Lane 2, 10,000×g organelle fraction; Lane 3, 100,000×g microsomal fraction; Lane 4, supernatant (cytosolic) fraction. LmMsrA-GFP is present only in whole cells and the cytosol. The glycosome enzyme, FBP, was only detected in the total extract and in the organelle and microsomal fractions confirming the integrity of the organellar fraction. C. Epifluroscent microscopy images of L. major promastigotes infected with pXG-msrA-GFP constructs. Cytoplasmic green fluorescence is seen in the parasites expressing the LmMsrA-GFP fusion protein.
To further investigate the role of LmMsrA, an L. major null mutant was generated using standard homologous recombination techniques in which the two chromosomal alleles encoding LmMsrA were replaced with drug resistance cassettes. A number of isolates were recovered after two rounds of selection. Deletion of the msrA gene and correct integration of bleomycin and puromycin resistance cassettes was confirmed using PCR (data not shown). Promastigote stages of these L. major ΔmsrA null mutants displayed similar growth kinetics in standard culture medium as wild type L. major promastigotes (data not shown). These results suggest that Leishmania msrA is not essential during cultivation in rich medium.
LmMsrA is a Functional Methionine Sulfoxide Reductase, as Loss of msrA Leads to Higher Levels of Methionine Sulfoxide within the Parasite
The E. coli and Salmonella MsrA enzymes can reduce both free- and protein-bound Met-S-O back to methionine , . In order to establish if LmMsrA has similar enzymatic activity, despite the alteration in the catalytic site, L. major wild type and ΔmsrA strains were cultured in the presence of varying concentrations of Met and MetO (final concentration 100 µM). Leishmania are methionine auxotrophs and are therefore dependent on uptake of methionine for growth. We reasoned that wild type, but not ΔmsrA mutant promastigotes would be able to reduce any MetO taken up by the methionine transporters. Parasites were grown in minimal media containing Met and/or MetO for five days and polar metabolites extracted and analyzed by liquid chromatography-mass spectrometry. Both strains contained very low levels of MetO (0.1–0.2 percent of Met levels) when grown in the absence of exogenously added MetO (Figure 3C). Wild type L. major promastigotes maintained low intracellular levels of MetO even when cultivated in high concentrations of MetO (>50 µM) (Figure 3B). In contrast, intracellular levels of MetO in L. major ΔmsrA promastigotes increased as the MetO concentration in the media was increased. Specifically, ΔmsrA promastigotes cultured in the presence of 100% MetO had 10-fold higher levels of MetO than wild type parasites cultured under the same conditions (Figure 3B). Significantly, only one of the two MetO isomers identified in the LC-MS analysis was elevated in the MetO-treated parasites (Figure 3A, lower panel). This finding is consistent with the observation that MsrA enzymes typically display a strong preference for the Met-S-O isomer and have minimal activity against the Met-R-O isomer. The low levels of the second isomer in both the wild type and ΔmsrA parasites likely reflects the continued expression of MsrB and/or MsrC enzymes in both parasites lines. The latter has been shown to reduce free Met-R-O , . Collectively, these results indicate that LmMsrA is a functional methionine reductase A.
A. Abundance of free MetO (comprising a doublet of Met-S-O/Met-R-O isomers) and Met in total extracts of wild type (upper panel) and ΔmsrA (lower panel) promastigotes cultivated in media containing 80 µM MetO and 20 µM Met. B. Ratio of MetO to Met levels in L. major wild type (black columns) and ΔmsrA (white columns) grown in varying concentrations of MetO.
Deletion of msrA Leads to a Greater Sensitivity to Oxidative Stress in vitro
Loss of MsrA results in greater susceptibility to oxidative stresses in a number of organisms , . Conversely, overexpression of msrA in T. cruzi increased resistance to exogenous oxidative stress, such as hydrogen peroxide treatment . We therefore examined whether the ΔmsrA mutant exhibited increased sensitivity to exogenous oxidative stress. Parasites were treated with 0.2 µM H2O2 for 24 hours and parasite viability measured by following parasite outgrowth in fresh media. Wild type L. major exhibited minimal growth retardation after H2O2 treatment compared to untreated, control parasites (Figure 4A). In contrast, growth of L. major ΔmsrA was significantly reduced (∼50% of untreated parasites) following H2O2 treatment, demonstrating a heightened sensitivity of parasites to exogenous oxidative stress in the absence of LmMsrA.
Growth is expressed as a percentage of the growth of untreated control parasites (for each cell line) 3 days following H2O2 removal, as a measure of cell viability following H2O2 treatment. Error bars represent S.E.M. of three experiments. A. L. major ΔmsrA is more susceptible to H2O2 treatment, with a significant decrease in cell viability compared to L. major wild type (P = 0.02, unpaired t-test). B. L. major ΔmsrA+pXG1A is also more susceptible to H2O2 treatment, with a significant decrease in cell viability compared to L. major+pXG1A (P = 0.01, unpaired t-test). In contrast, no significant decrease in cell viability is observed for the complemented mutant strain ΔmsrA+pXG1A-msrA when compared to L. major+pXG1A (P = 0.22, unpaired t-test).
To confirm that the observed difference was due to the absence of the LmMsrA, the L. major ΔmsrA mutant was transfected with a pXG1A plasmid encoding the msrA gene. Transfection with pXG1A-msrA largely restored resistance to exogenous H2O2, as the viability of the complemented strain after three days of exposure to H2O2 was not significantly different from the wild type parasites (Figure 4A). In contrast, transfection of the ΔmsrA mutant with the empty pXG1A plasmid did not increase the resistance of the mutant to oxidative stress (Figure 4B). These results provide direct evidence for msrA having a role in parasite resistance to oxidative stress.
Loss of msrA Results in Decreased Replication within Macrophages in vitro, but is Not Required for Pathogenesis in the Mouse Model of Cutaneous Leishmaniasis
L. major parasites proliferate within the mature phagolysosome of mammalian macrophages, where they are likely to be exposed to high levels of reactive oxygen species. Although L. major has a number of mechanisms to avoid the oxidative defense mechanisms of the host, these parasites are unable to completely inhibit the macrophage oxidative burst during invasion and subsequent proliferative phases  raising the possibility that LmMsrA may be important for parasite proliferation within this compartment. Murine RAW 264.7 macrophages were infected with L. major wild type and ΔmsrA stationary phase promastigotes and parasite proliferation assessed over 4 days. Both wild type and ΔmsrA parasites exhibited similar rates of macrophage invasion and the number of macrophages infected with both strains remained similar over 4 days (data not shown). However, proliferation of L. major ΔmsrA strain was markedly attenuated compared to L. major wild type parasites after four days (Figure 5A). A similar result was observed when macrophages were infected with L. major wild type+pXG1A and L. major ΔmsrA+pXG1A, with the number of L. major wild type+pXG1A parasites again approaching twice that of L. major ΔmsrA+pXG1A (Figure 5B). In contrast, growth of the complemented mutant L. major ΔmsrA+pXG1A-msrA more closely resembled that of L. major wild type+pXG1A (Figure 5B), indicating that the observed defect in intracellular growth was due to loss of msrA.
Data is presented as the number of parasites per infected macrophage, as observed by microscopy. Error bars represent S.E.M. from three independent experiments performed in triplicate. A. Macrophages infected with L. major wild type (squares) or L. major ΔmsrA (triangles). A significant decrease in parasite numbers is observed at day 4 for L. major ΔmsrA (P = 0.01, unpaired t-test). B. Macrophages infected with L. major+pXG1A (squares), L. major ΔmsrA+pXG1A (triangles) or L. major ΔmsrA+pXG1A-msrA (inverted triangles).
To investigate whether this replicative defect was important in the pathogenesis of the parasites in vivo, susceptible BALB/c mice were subcutaneously infected with either stationary-phase promastigotes or lesion-derived amastigotes. Following infection, the size of the inflammatory lesion was assessed weekly. Unexpectedly, no difference in average lesion size was observed for L. major ΔmsrA compared to L. major wild type, when either promastigote or amastigote stages were used to initiate infections (Figures 6A and B). These studies suggest that additional oxidative stress protective mechanisms are activated in in vivo parasite stages, compared to amastigotes in ex vivo-infected macrophages, which can compensate for loss of MsrA.
Leishmania parasites have developed a number of strategies for dealing with reactive oxygen and nitrogen species generated within the host macrophage despite lacking a number of key antioxidant enzymes, such as catalase and glutathione peroxidase. These strategies can be broadly grouped into avoidance of the host antioxidant response, neutralization of host generated reactive oxygen and nitrogen species and repair of oxidatively damaged proteins. While the first two lines of oxidative defense have been intensively studied , little is known about the protein repair mechanisms of Leishmania. Proteinogenic methionine residues are highly susceptible to oxidation and in this study we have investigated the potential role of a putative methionine sulfoxide reductase A in Leishmania pathogenesis. Leishmania MsrA is encoded by a single gene that is well conserved, both in terms of sequence homology (76–90%) and synteny across the Leishmania genus. MsrA gene homologues are also present in the genomes of other trypanosomatid parasites and exhibit ∼40% sequence homology to human and E. coli MsrA. The amino acid sequences of L. major MsrA is notable in containing a tyrosine residue instead of phenylalanine in an otherwise highly conserved sequence in the catalytic site. This change was conserved in all species of Leishmania and has not been reported in any other organism. Mutation of this Phe residue to Ala or His in the bacterial MsrA proteins is associated with a complete loss of enzymatic activity . The Phe to Tyr change observed in the Leishmania sequences is more conservative, but nonetheless results in addition of an extra hydroxyl group and increased polarity in the catalytic motif. Thus it was important to establish if LmMsrA was functional. An L. major strain lacking both alleles of msrA was readily generated indicating that LmMsrA is not essential for growth under standard culture conditions. When wild type and ΔmsrA mutant parasites were cultivated in the presence of exogenous methionine sulfoxide (MetO), the mutant parasites, but not the wild type parasites, accumulated significant levels of MetO, indicating that MsrA is functional. The ΔmsrA parasites accumulated a single isomer of MetO providing further evidence that the msrA gene encodes a classic MsrA with selectivity for the Met-S-O isomer, as well as indicating the presence of other methionine reductases with selectivity for the Met-R-O isomer. Interestingly, neither wild type nor ΔmsrA parasites were able to grow in methionine-free medium supplemented with MetO (data not shown). The rate of reduction of MetO may therefore be insufficient to supply the nutritional needs of these parasites and/or the rapid incorporation of MetO into other metabolic intermediates or proteins may result in growth inhibition.
The L. major MsrA protein lacked any recognizable organelle-targeting signals indicating that it is primarily or exclusively localized in the cytosol. This localization was confirmed by localization of an MsrA-GFP-fusion protein in live promastigotes by fluorescence microscopy and by subcellular fractionation. The MsrA proteins of T. cruzi and S. cerevisiae have also been shown to have a cytosolic localization , . In contrast, two isoforms of MsrA are expressed in mammalian cells, which are targeted to the cytosol and the mitochondrion, respectively , . Whether other methionine reductases in Leishmania and other trypanosomatids are targeted to the mitochondrion remains to be defined.
Deletion of the L. major msrA gene resulted in increased promastigote sensitivity to external oxidative stress (H2O2). These findings are consistent with a recent report showing that overexpression of MsrA in T. cruzi epimastigotes results in increased resistance to oxidative stress . The mutant line also exhibited a reduced capacity to replicate as amastigotes in murine macrophages, consistent with a number of expression profiling studies indicating that MsrA is constitutively expressed in both major developmental stages , . Collectively, these findings suggest that MsrA has a significant role in repairing oxidatively damaged parasite proteins and/or reversing the oxidation of potentially limiting levels of methionine in intracellular stages . Unexpectedly, deletion of L. major msrA had no discernable impact on lesion development in the highly susceptible BALB/c mouse model of cutaneous leishmaniasis. L. major infection in BALB/c induces a strong anti-inflammatory Th2 response, with concomitant suppression of classic activation and induction of the oxidative burst in infected macrophages (reviewed in ). Under these conditions, MsrA mediated repair of proteins may not be essential for parasite proliferation. Alternatively, the reduced virulence of the L. major ΔmsrA mutant in ex vivo infected macrophages but not in the BALB/c murine models, could reflect the up-regulation of additional parasite stress responses in the mammalian host. These could include increased expression of heat shock proteins, proteasome activity, lysosomal enzymes or autophagy –, all of which may have a role in either preventing protein miss-folding or removing damaged proteins and have been shown to be essential for Leishmania amastigote survival in vivo.
The absence of a strong loss of virulence phenotype in the ΔmsrA mutant may also reflect redundancy in methionine protein repair mechanisms. Specifically, the L. major genome contains genes for putative MsrB (LmjF28_2660) and MsrC (LmjF23_1460) enzymes . While MsrA is responsible for reversing the oxidation of the free and proteinogenic Met-S-O epimer, MsrB and MsrC are primarily responsible for repairing the Met-R-O epimer in damaged proteins and free Met-R-O, respectively , , . MsrA has been shown to be important for the virulence of several bacterial pathogens, including Helicobacter pylori , Salmonella typhimurium , Mycobacteria genitalium  and M. smegmatis , . In S. typhimurium and M. smegmatis, the msrB enzyme appeared to play a limited role in resistance to oxidative stress as deletion of the corresponding genes had little effect on the intracellular growth of these pathogens , , . However, deletion of both msrB and msrC genes in S. typhimurium resulted in a severe attenuation of virulence indicating that these enzymes may have redundant roles in repairing the Met-R-O epimer . In considering the role(s) of MsrA/B/C in microbial pathogenesis, it is important to note that these proteins may become essential under certain growth conditions or during specific stages of infection. For example, expression of MsrA is required for the proper functioning of extracellular adhesins , , , motility  and biofilm production  in several bacterial pathogens, reflecting the oxidative sensitivity of specific proteins involved in pathogenesis. The reduced virulence of the L. major ΔmsrA mutant in ex vivo-infected macrophages could therefore reflect a dependency on one or more oxidatively sensitive proteins that are not required for infection in vivo.
In conclusion, this is the first study to examine the role of MsrA, or indeed any oxidative damage repair mechanisms, in human pathogenic protozoon parasites. We show that LmMsrA confers protection against exogenous oxidative stress, and is required for normal growth in macrophages. Surprisingly, we find that MsrA is not essential for lesion development in mice. In future studies, it will be of interest to delineate the potentially redundant roles of MsrB and MsrC in Leishmania infectivity.
Materials and Methods
Use of mice was approved by the Institutional Animal Care and Use Committee of the University of Melbourne (ethics number 0811011.1). All animal experiments were performed in accordance with the Australian National Health Medical Research council (Australian code of practice for the care and use of animals for scientific purposes, 7th Edition, 2004, ISBN: 1864962658).
BLAST  searching of the Leishmania major strain Friedlin genome  was used to identify putative Msr enzymes. Protein sequence alignments were performed using ClustalW ,  and edited using JalView software .
Parasite Strains and Culture Conditions
L. major substrain MHOM/SU/73/5-ASKH was used to create all mutant and transfected lines. Parasites were routinely cultured as axenic promastigotes in Medium-199 (M199, Gibco, Invitrogen, Australia) supplemented with 10% heat-inactivated foetal bovine serum (FBS, Invitrogen) at 27°C or, prior to infection experiments, in SDM-79 medium supplemented with 10% FBS. G418 (Invitrogen, 100 µg/mL) was used to maintain selection pressure on parasites transfected with pXG1A plasmids, while puromycin (Invitrogen, 20 µg/mL) and/or bleocin (Calbiochem, 10 µg/mL) were used to select transformants during mutagenesis. Lesion amastigotes used in infection studies were prepared by disrupting murine lesions (diameter 5–10 mm) by passage through a stainless steel sieve and repeated passage through a 27 G needle to lyse macrophages and release parasites. Cell debris was removed by centrifugation (50×g, 10 min, 4°C) and amastigotes in the supernatant collected by a second centrifugation step (2000×g, 10 min, 4°C). Amastigotes were washed in sterile PBS and counted using a haemocytometer prior to use in infection studies.
Genetic Manipulation of L. major
L. major ΔmsrA was created via sequential homologous gene replacement in a manner similar to that previously described , . Briefly, a 935 bp 5′ untranslated region (UTR) containing a 5′ HindIII site and a 3′ BamHI/EcoRI/linker region was amplified using primers 5′-CCCAAGCTT CGTACGTGCGCATTCTTCGCC -3′ and 5′-CCGCTGGGATCCGAATTCGACGGGTGGGTGGGTG-3′, and a 980 bp 3′ UTR region containing a 5′ BamHI/EcoRI/linker region and a 3′ HindIII site was amplified using primers 5′-GAATTCGGATCCCAGCGGGCGGGTCGCTGCTGTCAC-3′ and 5′- ATAAGAATGCGGCCGCCAGGCACGCGCTGCC-3′. An overlap PCR was then performed using these PCR products as template, and the resultant product cloned into the HindIII/NotI sites of the pBluescript II SK vector (Stratagene, CA, USA). Puromycin or bleocin resistance cassettes were excised from either pXG-PAC or pXG-PHLEO  respectively using BamHI and EcoRI, and cloned into the engineered BamHI/EcoRI sites. Deletion mutant constructs were verified by restriction digest profiles and DNA sequencing. The PAC- and BLE-containing msrA targeting constructs were excised by HindII/NotI digest, gel purified and 5 µg of each sequentially electroporated into L. major as described previously . Clonal transformants resistant to both puromycin and bleocin were selected and deletion of msrA confirmed via triplicate PCR (data not shown). To generate the pXG-msrA vector for complementation studies, full-length msrA gene was amplified by primers 5′-CTCCCGGGATGCCCGCACCTATCCGAGCC-3′ and 5′-CGGGATCCCTAAAAGTACAAGCGGTGGAGC-3′ and cloned into the SmaI/BamHI sites of the pXG1A vector. To create the MsrA-GFP fusion protein, full length msrA was amplified using primers 5′-CCCGGATCCACCATGCCCGCACCTATCCCGAG-3′ and 5′-CGATATCAAAGTACAAGCGGTGCGAGCAG-3′ and cloned into the BamHI and EcoRV sites of pXG-GFP+ . The resulting pXG-derived constructs were confirmed via DNA sequencing and electroporated into L. major as previously described .
Detection of LmMsrA-GFP Using Immunoblotting and Microscopy
Subcellular fractionation of parasites was performed as described previously . Briefly, log phase parasites were harvested via centrifugation, washed in PBS and resuspended in hypotonic lysis buffer (1 mM NaHEPES-NaOH, pH 7.4, 1 mM DTT and 2 mM EGTA, protease inhibitor cocktail (Complete-EDTA free, Roche, Germany), 10 min 0°C) and cell lysis achieved by passage through a 27 G syringe needle. The lysis buffer was adjusted to 50 mM NaHEPES-NaOH, pH7.4 and cell debris was removed by low speed centrifugation (500×g, 15 min, 0°C), and the supernatant subjected to sequential centrifugation at 10,000×g, and 100,000×g (30 min, 4°C). The pellet and supernatant fractions were analyzed by SDS-PAGE and MsrA-GFP fusion protein detected using the anti-GFP antibody (clones 7.1 and 13.1, Roche, Germany) at 1∶1000 dilution with the signal detected using standard chemiluminescent techniques. The membrane was then probed with a antibody to the organellar marker, fructose-1,6-bisphosphatase (FBP)  (diluted 1∶100). For microscopy studies, live cells were immobilized on poly-L-lysine coated coverslips and visualized using a Zeiss Axioplan 2 epifluorescence microscope. Images were obtained using an AxiCam MRm camera and AXIOVISION 4.3 software.
LC-MS Measurement of Methionine/Methionine Sulfoxide
L. major promastigotes were cultured in completely defined media  containing 0–100 µM methionine (Met, Sigma, USA) and 0–100 µM methionine sulfoxide (MetO, MP Biomedicals, Australia) at a final concentration of 100 µM. Cells were incubated for 5 days and metabolites extracted as previously described with rapid metabolic quenching . Briefly, parasite metabolism was quenched by rapid cooling to 0°C in an ethanol/dry-ice slurry and parasites rapidly harvested by centrifugation (3,200×g, 10 min, 0°C). The pellet was washed in cold PBS and parasites lysed in chloroform:methanol:water (1∶3:1, v/v, 250 µL) with sonication and incubation on ice for 15 minutes. Insoluble material was removed by centrifugation (10,000×g, 5 min, 0°C) and water (100 µL) added to generate a biphasic mixture after centrifugation (10,000 g, 5 min, 0°C). The upper, aqueous phase was dried under nitrogen in 250 µL glass vials and amino compounds derivatised with aminoquinolyl-N-hydroxycuccinimidyl carbamate (AQC) reagent  prior to liquid chromatography-mass spectrometry (LC-MS) analysis . Multiple reaction monitoring was used to detect methionine and methionine-S/R-sulfoxide peaks using m/z 320/171 and m/z 336/171 transitions, respectively.
Induction of Oxidative Stress in vitro
L. major promastigotes (2×105) were exposed to fresh H2O2 (20 µM) for 24 h, then harvested by centrifugation and resuspended into fresh M199 media. Untreated control parasites were included for each strain tested. Parasites were incubated at 27°C for 5 days and viable numbers assessed every 24 h by counting using a haemocytometer, as an indirect measure of the viable number of parasites surviving H2O2 treatment.
Macrophage and Mouse Infections
Infection of RAW 264.7 murine macrophage cells was performed as described previously . Briefly, macrophages growing on coverslips were infected at a multiplicity of infection (MOI) of 10 with stationary phase promastigotes and incubated at 33°C in RPMI medium supplemented with 10% FBS and 5% CO2. Macrophages were washed after 4 h to remove extracellular parasites and coverslips fixed with 4% paraformaldehyde every 24 hours for four days. Intracellular parasites were stained with Hoechst and triplicate coverslips were counted at each time point, with a minimum of 100 macrophages per coverslip, to determine parasite infection levels. Three independent infections were performed in triplicate. To assess virulence in mice, 6–8 week old (age-matched) female susceptible BALB/c mice were injected subcutaneously at the tail base with either 5×105 amastigotes or 1×106 stationary phase promastigotes. Lesion size was assessed weekly and scored 0–4, as described previously . All parasite cell lines had been passaged previously in mice to ensure no loss of virulence unrelated to the known genetic mutations, and parasites re-isolated from mice as described previously .
We thank David De Souza, Thusi Rupasinghe and Claudio Da Silva (Metabolomics Australia, Bio21 Institute) for undertaking the LC-MS analysis.
Conceived and designed the experiments: FMS LT MJM. Performed the experiments: FMS LT JER. Analyzed the data: FMS LT JER MJM. Contributed reagents/materials/analysis tools: ECS TN. Wrote the paper: FMS LT MJM.
- 1. Murray HW, Berman JD, Davies CR, Saravia NG (2005) Advances in leishmaniasis. Lancet 366: 1561–1577.
- 2. den Boer M, Argaw D, Jannin J, Alvar J (2011) Leishmaniasis impact and treatment access. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 17: 1471–1477.
- 3. Croft SL, Olliaro P (2011) Leishmaniasis chemotherapy–challenges and opportunities. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 17: 1478–1483.
- 4. Peters NC, Egen JG, Secundino N, Debrabant A, Kimblin N, et al. (2008) In vivo imaging reveals an essential role for neutrophils in leishmaniasis transmitted by sand flies. Science 321: 970–974.
- 5. McConville MJ, Naderer T (2011) Metabolic pathways required for the intracellular survival of Leishmania. Annu Rev Microbiol 65: 543–561.
- 6. Van Assche T, Deschacht M, da Luz RA, Maes L, Cos P (2011) Leishmania-macrophage interactions: insights into the redox biology. Free radical biology & medicine 51: 337–351.
- 7. Spath GF, Garraway LA, Turco SJ, Beverley SM (2003) The role(s) of lipophosphoglycan (LPG) in the establishment of Leishmania major infections in mammalian hosts. Proc Natl Acad Sci U S A 100: 9536–9541.
- 8. Chan J, Fujiwara T, Brennan P, McNeil M, Turco SJ, et al. (1989) Microbial glycolipids: possible virulence factors that scavenge oxygen radicals. Proc Natl Acad Sci U S A 86: 2453–2457.
- 9. Plewes KA, Barr SD, Gedamu L (2003) Iron superoxide dismutases targeted to the glycosomes of Leishmania chagasi are important for survival. Infection and immunity 71: 5910–5920.
- 10. Pal S, Dolai S, Yadav RK, Adak S (2010) Ascorbate peroxidase from Leishmania major controls the virulence of infective stage of promastigotes by regulating oxidative stress. PloS one 5: e11271.
- 11. Dolai S, Yadav RK, Pal S, Adak S (2009) Overexpression of mitochondrial Leishmania major ascorbate peroxidase enhances tolerance to oxidative stress-induced programmed cell death and protein damage. Eukaryotic cell 8: 1721–1731.
- 12. Dolai S, Yadav RK, Pal S, Adak S (2008) Leishmania major ascorbate peroxidase overexpression protects cells against reactive oxygen species-mediated cardiolipin oxidation. Free radical biology & medicine 45: 1520–1529.
- 13. Nare B, Garraway LA, Vickers TJ, Beverley SM (2009) PTR1-dependent synthesis of tetrahydrobiopterin contributes to oxidant susceptibility in the trypanosomatid protozoan parasite Leishmania major. Current genetics 55: 287–299.
- 14. Moreira W, Leblanc E, Ouellette M (2009) The role of reduced pterins in resistance to reactive oxygen and nitrogen intermediates in the protozoan parasite Leishmania. Free radical biology & medicine 46: 367–375.
- 15. Ariyanayagam MR, Fairlamb AH (2001) Ovothiol and trypanothione as antioxidants in trypanosomatids. Molecular and biochemical parasitology 115: 189–198.
- 16. Vickers TJ, Wyllie S, Fairlamb AH (2004) Leishmania major elongation factor 1B complex has trypanothione S-transferase and peroxidase activity. J Biol Chem 279: 49003–49009.
- 17. Oza SL, Shaw MP, Wyllie S, Fairlamb AH (2005) Trypanothione biosynthesis in Leishmania major. Molecular and biochemical parasitology 139: 107–116.
- 18. Mukherjee A, Roy G, Guimond C, Ouellette M (2009) The gamma-glutamylcysteine synthetase gene of Leishmania is essential and involved in response to oxidants. Molecular microbiology 74: 914–927.
- 19. Dumas C, Ouellette M, Tovar J, Cunningham ML, Fairlamb AH, et al. (1997) Disruption of the trypanothione reductase gene of Leishmania decreases its ability to survive oxidative stress in macrophages. The EMBO journal 16: 2590–2598.
- 20. Tovar J, Cunningham ML, Smith AC, Croft SL, Fairlamb AH (1998) Down-regulation of Leishmania donovani trypanothione reductase by heterologous expression of a trans-dominant mutant homologue: effect on parasite intracellular survival. Proc Natl Acad Sci U S A 95: 5311–5316.
- 21. Tovar J, Wilkinson S, Mottram JC, Fairlamb AH (1998) Evidence that trypanothione reductase is an essential enzyme in Leishmania by targeted replacement of the tryA gene locus. Molecular microbiology 29: 653–660.
- 22. Moskovitz J (2005) Methionine sulfoxide reductases: ubiquitous enzymes involved in antioxidant defense, protein regulation, and prevention of aging-associated diseases. Biochim Biophys Acta 1703: 213–219.
- 23. Moskovitz J, Weissbach H, Brot N (1996) Cloning the expression of a mammalian gene involved in the reduction of methionine sulfoxide residues in proteins. Proc Natl Acad Sci U S A 93: 2095–2099.
- 24. Grimaud R, Ezraty B, Mitchell JK, Lafitte D, Briand C, et al. (2001) Repair of oxidized proteins. Identification of a new methionine sulfoxide reductase. J Biol Chem 276: 48915–48920.
- 25. Lin Z, Johnson LC, Weissbach H, Brot N, Lively MO, et al. (2007) Free methionine-(R)-sulfoxide reductase from Escherichia coli reveals a new GAF domain function. Proc Natl Acad Sci U S A 104: 9597–9602.
- 26. Etienne F, Spector D, Brot N, Weissbach H (2003) A methionine sulfoxide reductase in Escherichia coli that reduces the R enantiomer of methionine sulfoxide. Biochemical and biophysical research communications 300: 378–382.
- 27. Denkel LA, Horst SA, Rouf SF, Kitowski V, Bohm OM, et al. (2011) Methionine sulfoxide reductases are essential for virulence of Salmonella typhimurium. PloS one 6: e26974.
- 28. Zhao C, Hartke A, La Sorda M, Posteraro B, Laplace JM, et al. (2010) Role of methionine sulfoxide reductases A and B of Enterococcus faecalis in oxidative stress and virulence. Infection and immunity 78: 3889–3897.
- 29. Dhandayuthapani S, Blaylock MW, Bebear CM, Rasmussen WG, Baseman JB (2001) Peptide methionine sulfoxide reductase (MsrA) is a virulence determinant in Mycoplasma genitalium. Journal of bacteriology 183: 5645–5650.
- 30. Das K, De la Garza G, Maffi S, Saikolappan S, Dhandayuthapani S (2012) Methionine sulfoxide reductase A (MsrA) deficient Mycoplasma genitalium shows decreased interactions with host cells. PloS one 7: e36247.
- 31. Arias DG, Cabeza MS, Erben ED, Carranza PG, Lujan HD, et al. (2011) Functional characterization of methionine sulfoxide reductase A from Trypanosoma spp. Free radical biology & medicine 50: 37–46.
- 32. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403–410.
- 33. Moskovitz J, Poston JM, Berlett BS, Nosworthy NJ, Szczepanowski R, et al. (2000) Identification and characterization of a putative active site for peptide methionine sulfoxide reductase (MsrA) and its substrate stereospecificity. J Biol Chem 275: 14167–14172.
- 34. Douglas T, Daniel DS, Parida BK, Jagannath C, Dhandayuthapani S (2004) Methionine sulfoxide reductase A (MsrA) deficiency affects the survival of Mycobacterium smegmatis within macrophages. Journal of bacteriology 186: 3590–3598.
- 35. Dhandayuthapani S, Jagannath C, Nino C, Saikolappan S, Sasindran SJ (2009) Methionine sulfoxide reductase B (MsrB) of Mycobacterium smegmatis plays a limited role in resisting oxidative stress. Tuberculosis 89 Suppl 1S26–32.
- 36. Hansel A, Kuschel L, Hehl S, Lemke C, Agricola HJ, et al. (2002) Mitochondrial targeting of the human peptide methionine sulfoxide reductase (MSRA), an enzyme involved in the repair of oxidized proteins. The FASEB journal : official publication of the Federation of American Societies for Experimental Biology 16: 911–913.
- 37. Vougier S, Mary J, Friguet B (2003) Subcellular localization of methionine sulphoxide reductase A (MsrA): evidence for mitochondrial and cytosolic isoforms in rat liver cells. The Biochemical journal 373: 531–537.
- 38. Moskovitz J, Rahman MA, Strassman J, Yancey SO, Kushner SR, et al. (1995) Escherichia coli peptide methionine sulfoxide reductase gene: regulation of expression and role in protecting against oxidative damage. Journal of bacteriology 177: 502–507.
- 39. Kaya A, Koc A, Lee BC, Fomenko DE, Rederstorff M, et al. (2010) Compartmentalization and regulation of mitochondrial function by methionine sulfoxide reductases in yeast. Biochemistry 49: 8618–8625.
- 40. Hansel A, Kuschel L, Hehl S, Lemke C, Agricola HJ, et al. (2002) Mitochondrial targeting of the human peptide methionine sulfoxide reductase (MSRA), an enzyme involved in the repair of oxidized proteins. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 16: 911–913.
- 41. Leifso K, Cohen-Freue G, Dogra N, Murray A, McMaster WR (2007) Genomic and proteomic expression analysis of Leishmania promastigote and amastigote life stages: the Leishmania genome is constitutively expressed. Mol Biochem Parasitol 152: 35–46.
- 42. Rochette A, Raymond F, Ubeda JM, Smith M, Messier N, et al. (2008) Genome-wide gene expression profiling analysis of Leishmania major and Leishmania infantum developmental stages reveals substantial differences between the two species. BMC Genomics 9: 255.
- 43. Vickers TJ, Orsomando G, de la Garza RD, Scott DA, Kang SO, et al. (2006) Biochemical and Genetic Analysis of Methylenetetrahydrofolate Reductase in Leishmania Metabolism and Virulence. J Biol Chem 281: 38150–38158.
- 44. Sacks D, Noben-Trauth N (2002) The immunology of susceptibility and resistance to Leishmania major in mice. Nature reviews Immunology 2: 845–858.
- 45. Besteiro S, Williams RA, Coombs GH, Mottram JC (2007) Protein turnover and differentiation in Leishmania. International journal for parasitology 37: 1063–1075.
- 46. Morales MA, Watanabe R, Dacher M, Chafey P, Osorio y Fortea J, et al. (2010) Phosphoproteome dynamics reveal heat-shock protein complexes specific to the Leishmania donovani infectious stage. Proc Natl Acad Sci U S A 107: 8381–8386.
- 47. Williams RA, Smith TK, Cull B, Mottram JC, Coombs GH (2012) ATG5 is essential for ATG8-dependent autophagy and mitochondrial homeostasis in Leishmania major. PLoS pathogens 8: e1002695.
- 48. Ivens AC, Peacock CS, Worthey EA, Murphy L, Aggarwal G, et al. (2005) The genome of the kinetoplastid parasite, Leishmania major. Science 309: 436–442.
- 49. Moskovitz J (2005) Roles of methionine suldfoxide reductases in antioxidant defense, protein regulation and survival. Current pharmaceutical design 11: 1451–1457.
- 50. Weissbach H, Resnick L, Brot N (2005) Methionine sulfoxide reductases: history and cellular role in protecting against oxidative damage. Biochim Biophys Acta 1703: 203–212.
- 51. Alamuri P, Maier RJ (2004) Methionine sulphoxide reductase is an important antioxidant enzyme in the gastric pathogen Helicobacter pylori. Molecular microbiology 53: 1397–1406.
- 52. Wizemann TM, Moskovitz J, Pearce BJ, Cundell D, Arvidson CG, et al. (1996) Peptide methionine sulfoxide reductase contributes to the maintenance of adhesins in three major pathogens. Proc Natl Acad Sci U S A 93: 7985–7990.
- 53. Lei Y, Zhang Y, Guenther BD, Kreth J, Herzberg MC (2011) Mechanism of adhesion maintenance by methionine sulphoxide reductase in Streptococcus gordonii. Molecular microbiology 80: 726–738.
- 54. Hassouni ME, Chambost JP, Expert D, Van Gijsegem F, Barras F (1999) The minimal gene set member msrA, encoding peptide methionine sulfoxide reductase, is a virulence determinant of the plant pathogen Erwinia chrysanthemi. Proc Natl Acad Sci U S A 96: 887–892.
- 55. Goujon M, McWilliam H, Li W, Valentin F, Squizzato S, et al. (2010) A new bioinformatics analysis tools framework at EMBL-EBI. Nucleic Acids Res 38: W695–699.
- 56. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, et al. (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947–2948.
- 57. Waterhouse AM, Procter JB, Martin DM, Clamp M, Barton GJ (2009) Jalview Version 2–a multiple sequence alignment editor and analysis workbench. Bioinformatics 25: 1189–1191.
- 58. Cruz A, Coburn CM, Beverley SM (1991) Double targeted gene replacement for creating null mutants. Proc Natl Acad Sci U S A 88: 7170–7174.
- 59. Naderer T, Ellis MA, Sernee MF, De Souza DP, Curtis J, et al. (2006) Virulence of Leishmania major in macrophages and mice requires the gluconeogenic enzyme fructose-1,6-bisphosphatase. Proc Natl Acad Sci U S A 103: 5502–5507.
- 60. Freedman DJ, Beverley SM (1993) Two more independent selectable markers for stable transfection of Leishmania. Molecular and biochemical parasitology 62: 37–44.
- 61. Naderer T, Wee E, McConville MJ (2008) Role of hexosamine biosynthesis in Leishmania growth and virulence. Molecular microbiology 69: 858–869.
- 62. Ha DS, Schwarz JK, Turco SJ, Beverley SM (1996) Use of the green fluorescent protein as a marker in transfected Leishmania. Molecular and biochemical parasitology 77: 57–64.
- 63. Mullin KA, Foth BJ, Ilgoutz SC, Callaghan JM, Zawadzki JL, et al. (2001) Regulated degradation of an endoplasmic reticulum membrane protein in a tubular lysosome in Leishmania mexicana. Mol Biol Cell 12: 2364–2377.
- 64. Merlen T, Sereno D, Brajon N, Rostand F, Lemesre JL (1999) Leishmania spp: completely defined medium without serum and macromolecules (CDM/LP) for the continuous in vitro cultivation of infective promastigote forms. The American journal of tropical medicine and hygiene 60: 41–50.
- 65. Saunders EC, Ng WW, Chambers JM, Ng M, Naderer T, et al. (2011) Isotopomer profiling of Leishmania mexicana promastigotes reveals important roles for succinate fermentation and aspartate uptake in tricarboxylic acid cycle (TCA) anaplerosis, glutamate synthesis, and growth. J Biol Chem 286: 27706–27717.
- 66. Boughton BA, Callahan DL, Silva C, Bowne J, Nahid A, et al. (2011) Comprehensive profiling and quantitation of amine group containing metabolites. Analytical chemistry 83: 7523–7530.
- 67. Naderer T, Dandash O, McConville MJ (2011) Calcineurin is required for Leishmania major stress response pathways and for virulence in the mammalian host. Molecular microbiology 80: 471–480.
- 68. Titus RG, Marchand M, Boon T, Louis JA (1985) A limiting dilution assay for quantifying Leishmania major in tissues of infected mice. Parasite immunology 7: 545–555.