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Open Access
Peer-reviewed
Research Article
SOAP3-dp: Fast, Accurate and Sensitive GPU-Based Short Read Aligner
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Ruibang Luo ,
Contributed equally to this work with: Ruibang Luo, Thomas Wong, Jianqiao Zhu, Chi-Man Liu
Affiliation HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory & Department of Computer Science, University of Hong Kong, Hong Kong, China
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Thomas Wong ,
Contributed equally to this work with: Ruibang Luo, Thomas Wong, Jianqiao Zhu, Chi-Man Liu
Affiliation HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory & Department of Computer Science, University of Hong Kong, Hong Kong, China
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Jianqiao Zhu ,
Contributed equally to this work with: Ruibang Luo, Thomas Wong, Jianqiao Zhu, Chi-Man Liu
Affiliations HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory & Department of Computer Science, University of Hong Kong, Hong Kong, China, Department of Computer Sciences, University of Wisconsin-Madison, Madison, Wisconsin, United States of America
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Chi-Man Liu ,
Contributed equally to this work with: Ruibang Luo, Thomas Wong, Jianqiao Zhu, Chi-Man Liu
Affiliation HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory & Department of Computer Science, University of Hong Kong, Hong Kong, China
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Xiaoqian Zhu,
Affiliation School of Computer Science, National University of Defense Technology, Changsha, Hunan, China
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Edward Wu,
Affiliation HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory & Department of Computer Science, University of Hong Kong, Hong Kong, China
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Lap-Kei Lee,
Affiliation HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory & Department of Computer Science, University of Hong Kong, Hong Kong, China
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Haoxiang Lin,
Affiliation BGI-Shenzhen, Shenzhen, Guangdong, China
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Wenjuan Zhu,
Affiliation BGI-Shenzhen, Shenzhen, Guangdong, China
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David W. Cheung,
Affiliation HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory & Department of Computer Science, University of Hong Kong, Hong Kong, China
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Hing-Fung Ting,
Affiliation HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory & Department of Computer Science, University of Hong Kong, Hong Kong, China
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Siu-Ming Yiu,
Affiliation HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory & Department of Computer Science, University of Hong Kong, Hong Kong, China
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Shaoliang Peng,
Affiliation School of Computer Science, National University of Defense Technology, Changsha, Hunan, China
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Chang Yu,
Affiliation BGI-Shenzhen, Shenzhen, Guangdong, China
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Yingrui Li ,
* E-mail: liyr@genomics.cn (YL); lirq@pku.edu.cn (RL); twlam@cs.hku.hk (TL)
Affiliation BGI-Shenzhen, Shenzhen, Guangdong, China
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Ruiqiang Li ,
* E-mail: liyr@genomics.cn (YL); lirq@pku.edu.cn (RL); twlam@cs.hku.hk (TL)
Affiliation Peking-Tsinghua Center for Life Sciences, Biodynamic Optical Imaging Center and School of Life Sciences, Peking University, Beijing, China
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Tak-Wah Lam
* E-mail: liyr@genomics.cn (YL); lirq@pku.edu.cn (RL); twlam@cs.hku.hk (TL)
Affiliation HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory & Department of Computer Science, University of Hong Kong, Hong Kong, China
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SOAP3-dp: Fast, Accurate and Sensitive GPU-Based Short Read Aligner
- Ruibang Luo,
- Thomas Wong,
- Jianqiao Zhu,
- Chi-Man Liu,
- Xiaoqian Zhu,
- Edward Wu,
- Lap-Kei Lee,
- Haoxiang Lin,
- Wenjuan Zhu,
- David W. Cheung
- Published: May 31, 2013
- https://doi.org/10.1371/journal.pone.0065632