Peer Review History

Original SubmissionOctober 3, 2024
Decision Letter - Erika Kothe, Editor

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Academic Editor

PLOS ONE

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Raspé: Mae Fah Luang University grant 641A01003, “Survey of edible fungi in dry dipterocarp forests of Chiang Mai Province, Thailand-->--> -->-->Komsit Wisitrassameewong: the Ecological Monitoring and Plant Specimen and Barcode References project P2250745, National Science and Technology Development Agency-->--> -->-->Slavomír Adamčík, Katarína Adamčíková: the Slovak Research and Development Agency projects APVV-15-0210 and APVV-20-0257."-->--> -->-->Please state what role the funders took in the study.  If the funders had no role, please state: ""The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript."" -->-->If this statement is not correct you must amend it as needed. -->-->Please include this amended Role of Funder statement in your cover letter; we will change the online submission form on your behalf.-->--> -->-->5. 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Additional Editor Comments:

The reviewers give important and helpfult comments that need to be addressed.

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

Reviewer #1: Yes

Reviewer #2: Yes

**********

2. Has the statistical analysis been performed appropriately and rigorously? -->?>

Reviewer #1: Yes

Reviewer #2: Yes

**********

3. Have the authors made all data underlying the findings in their manuscript fully available??>

The PLOS Data policy

Reviewer #1: Yes

Reviewer #2: Yes

**********

4. Is the manuscript presented in an intelligible fashion and written in standard English??>

Reviewer #1: Yes

Reviewer #2: Yes

**********

Reviewer #1: The manucript dealing with the diversity of green cracking Russulas and the formal description of a new commonly eaten species with major economical improtance is a valuable contribution that will in the future help to ensure food safety.

Please pay careful attention to unify formatting styles within the manuscript, especially regarding the two provided species descriptions.

An annotated manuscript file with specific comments is attached.

Reviewer #2: The paper by Wisitrassameewong et al. addresses the diversity of commercially valued Russula species within the Virescentinae lineage. Previous studies introduced considerable uncertainties by applying European species names to Asian collections. This study aims to clarify the taxonomy of Thai collections and includes the description of a novel species, Russula orientalovirescens, which is clearly distinct from the European Russula virescens.

At first glance, the study appears to be well-conducted, with adequate sampling and the application of standard phylogenetic methods. Notably, the authors included an analysis of environmental sequences, providing valuable insights into the distribution of the newly described R. orientalovirescens. The results are thoroughly discussed and compared with the current state-of-the-art literature.

However, several issues were raised during the review process:

Introduction and Hypotheses: The information provided in the Introduction does not clearly lead to the stated hypotheses. While the hypotheses and aims of the study are scientifically sound, they require clearer and more precise formulation.

Inconsistencies in Specimen Presentation: There is significant inconsistency in the documentation of the specimens analyzed for the newly described R. orientalovirescens. The authors stated that four specimens were analyzed, yet:

Only two specimens are listed in Table 1.

Three specimens are depicted in the phylogenetic trees.

Table 2 showcases the morphological variability of three specimens, including specimen OR1607, which is not listed in Table 1 or shown in the phylogenetic trees.

This raises concerns about whether the identity of OR1607 was molecularly confirmed. I strongly encourage the authors to include specimen OR1607 in an additional phylogenetic analysis.

Sequencing Effort: According to Table 1, only one specimen of R. orientalovirescens (OR1687) had multiple genetic regions sequenced. This contrasts with the more extensive sequencing efforts for European collections of R. mustelina and R. virescens. Similar efforts should be applied to R. orientalovirescens to ensure consistency and robustness of the analyses.

Terminology and Descriptions: Terminology and species descriptions should be more consistent throughout the manuscript (see detailed comments in the attached file).

References: The references require a thorough review for accuracy and completeness.

Additional minor comments and suggestions are included in the attached file.

**********

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Reviewer #1: No

Reviewer #2: No

**********

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Attachments
Attachment
Submitted filename: PONE-D-24-43558_EDIT.pdf
Attachment
Submitted filename: Summary of Comments on PONE-D-24-43558_reviewer.pdf
Revision 1

Manuscript PONE-D-24-43558

Response to the reviewers’ comments

Reviewer #1: The manuscript dealing with the diversity of green cracking Russulas and the formal description of a new commonly eaten species with major economical importance is a valuable contribution that will in the future help to ensure food safety.

Please pay careful attention to unify formatting styles within the manuscript, especially regarding the two provided species descriptions.

Reply: thank you for the positive feedback. We carefully revised the formatting styles.

Responses to each point raised by reviewer #1

Comment 1 (line 62): change to "Heterophyllidiae"

Reply: revised

Comment 2 (line 153): add space

Reply: added

Comment 3 (line 224): Please review the authors abbreviation, which has been unconsistently used in past publications and make a registry with the correct abbreviation in the International Plant Names Index to allow an unambiguous identification of the author.

Wissitrassameewong, K. Wisitrassameewong, Wissitr. or Wisitr.

Reply: revised. We used Wisitr., which is the form registered in Index Fungorum and IPNI.

Comment 4 (line 237): delete "in"

Reply: revised

Comment 5 (line 240): please add the colour codes of the chart that is cited in material and methods section similar to the following species description

Reply: the colour chart was not used to indicate the colour of the new species. This is inconsistent among both descriptions. We decided to indicate the colours without the colour codes

Comment 6 (line 244): taste should be bold, since it is not a subcharacter of odour.

Reply: revised

Comment 7 (line 244): 1A? 1B?

Reply: revised

Comment 8 (line 245): "×" is missing

Reply: revised

Comment 9 (line 282): genera names should be italic

Reply: revised

Comment 10 (line 284): add "to"

Reply: added

Comment 11 (line 291): change to "compared"

Reply: revised

Comment 12 (line 315): bold

Reply: revised

Comment 13 (line 316): italic

Reply: revised

Comment 14 (line 316): add taste

Reply: added

Comment 15 (line 331): it is bold in the previous description.

Reply: revised

Comment 16 (line 332): later in the text different spelling "thin-walled"

Reply: revised

Comment 17 (line 338): not bold in previous description.

Reply: revised

Comment 18 (line 351): The formatting style should be adapted to the format of the previous description.

Reply: revised

Comment 19 (line 355): genera names in italic

Reply: revised

Comment 20 (line 361): "Heterophyllidiae"

Reply: revised

Comment 21 (line 373): change to "exhibits"

Reply: revised

Comment 22 (line 376): change to "compared"

Reply: revised

Comment 23 (line 395): change to "indicates"

Reply: revised

Comment 24 (Table 2): please add information that all values are in µm.

Reply: added

Comment 25 (Figure 4): change to plural "Basidiospores"

Reply: revised

Comment 26 (Figure 4): change to plural "Marginal cells"

Reply: revised

Comment 27 (Figure 4): change to plural "scale bars"

Reply: revised

Comment 28 (Figure 5): change to plural "hyphal terminations"

Reply: revised

Comment 29 (Figure 7): see comments Fig. 4

Reply: revised

Comment 30 (Figure 8): see comments Fig. 5

Reply: revised

Comment 31 (Figure 1 ITS tree): replace "F. sylvatica" by "Fagus sylvatica" to unify the style.

Reply: revised

Comment 32 (Figure 1 ITS tree): replace "Slovania" by "Slovenia"

Reply: revised

Comment 33 (Figure 1 ITS tree): replace "Columbia" by "Colombia"

Reply: revised

Reviewer #2: The paper by Wisitrassameewong et al. addresses the diversity of commercially valued Russula species within the Virescentinae lineage. Previous studies introduced considerable uncertainties by applying European species names to Asian collections. This study aims to clarify the taxonomy of Thai collections and includes the description of a novel species, Russula orientalovirescens, which is clearly distinct from the European Russula virescens.

At first glance, the study appears to be well-conducted, with adequate sampling and the application of standard phylogenetic methods. Notably, the authors included an analysis of environmental sequences, providing valuable insights into the distribution of the newly described R. orientalovirescens. The results are thoroughly discussed and compared with the current state-of-the-art literature.

However, several issues were raised during the review process:

Introduction and Hypotheses: The information provided in the Introduction does not clearly lead to the stated hypotheses. While the hypotheses and aims of the study are scientifically sound, they require clearer and more precise formulation.

Reply: We propose this change (Lines 97-104):

Based on the molecular and morphological differences previously reported between the Asian green-areolate collections referred to as Russula virescens or R. cf. virescens in the literature on the one hand, and other green Virescentinae species and the European R. virescens on the other hand, we hypothesized that there is at least one additional Asian species of green-cracking Russula. Our aim was to confirm if there is phylogenetic signal (using both ITS and multi-locus data) to distinguish our recent Thai collections from European R. virescens and other described similar Asian Virescentinae members, and also to identify morphological differences between them in case they represent a distinct species.

Inconsistencies in Specimen Presentation: There is significant inconsistency in the documentation of the specimens analyzed for the newly described R. orientalovirescens. The authors stated that four specimens were analyzed, yet:

Only two specimens are listed in Table 1.

Three specimens are depicted in the phylogenetic trees.

Table 2 showcases the morphological variability of three specimens, including specimen OR1607, which is not listed in Table 1 or shown in the phylogenetic trees.

This raises concerns about whether the identity of OR1607 was molecularly confirmed. I strongly encourage the authors to include specimen OR1607 in an additional phylogenetic analysis.

Reply: we checked the number of samples in the table 1 and phylogenetic tree carefully. We added the information of OR1607 and OR1619 in the table 1.

Sequencing Effort: According to Table 1, only one specimen of R. orientalovirescens (OR1687) had multiple genetic regions sequenced. This contrasts with the more extensive sequencing efforts for European collections of R. mustelina and R. virescens. Similar efforts should be applied to R. orientalovirescens to ensure consistency and robustness of the analyses.

Reply: we tried and sequence the ITS, rpb2 and tef1 sequences of OR1607. We could only obtain the ITS sequence.

Terminology and Descriptions: Terminology and species descriptions should be more consistent throughout the manuscript (see detailed comments in the attached file).

Reply: revised accordingly

References: The references require a thorough review for accuracy and completeness.

Reply: revised accordingly

Additional minor comments and suggestions are included in the attached file.

Responses to each point raised by reviewer #2

Comment 1 (line 91-92): Hypothesis does not sound right to me. Since Cao et al. 2013 published their study, multiple species within Virescentinae were described. Additionally, there is Russula viridirubrolimbata which could potentially represent Cao´s "asian virescens". It would be beneficial better elaborate, on which basis you have assumed, that there could be higher diversity.

Reply: We rephrased our hypothesis and rationale for it. As explained above in the introduction, in all the Asian green Virescentinae, which do not include R. viridirubrolimbata because the pileus margin of the latter has red colours, the cuticle is cracking at most near the margin. The collections with green and almost entirely areolate cuticle are still referred to as R. virescens or R. cf. virescens despite dissimilarities in ITS sequences.

Comment 2 (line 92-95): This aim does not makes a sense to me. Previous phylogenetic studies clearly distinguished asian "virescentinae" from european. You have noted also this fact in the text above, when you state: "Soon it became apparent that at least part of so-called R. virescens in areas distant from Europe represent different species".

Therefore, I do not understand, why is important to distinguish your collections from european Russula virescens rather than closely related Russula viridirubrolimbata

Reply: see reply to comment 1

Comment 3 (line 190): In the presented tree, there is 42 samples

Reply: revised

Comment 4 (line235): you should unify units across the manuscript. Description of R. virescens is given in mm instead of cm

Reply: revised

Comment 5 (line 237): when mature instead of "in when"

Reply: revised

Comment 6 (line 238): areolae in centre?

Reply: revised

Comment 7 (line 245): 7.4–8.1–8.8(–9.2) × 6.0–6.4–6.9(–7.2)

Reply: revised

Comment 8 (line 246-250): about ornamentation are arranged somehow chaotically. I recommend to use same order as for R. virescens

Reply: revised

Comment 9 (line 248): isolated

Reply: revised

Comment 10 (line 275-276): information about cystidioid or oleipherous hyphae is absent

Reply: added

Comment 11 (line 418): superfluous

Reply: we prefer to keep it

Comment 12 (table 2): suggest to add also comparisons with the other species - R. parvovirescens and R. viridirubrolimbata, from literature

Reply: We added data on R. parvovirescens. However, we think that adding R. viridirubrolimbata would not be useful since this species can easily be differentiated from R. virescens based on macromorphology (red colours near pileus margin)

Comment 13 (table 2): In the description, you are referring to pleurocystidia as hymenial cystidia on lamellae sided / cheilocystidia on lamellae edges

Reply: revised

Attachments
Attachment
Submitted filename: Response to Reviewers.docx
Decision Letter - Erika Kothe, Editor

Russula orientalovirescens sp. nov., a common Southeast Asian edible fungus is different from the European look-alike R. virescens

PONE-D-24-43558R1

Dear Dr. Raspé,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

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Kind regards,

Erika Kothe

Academic Editor

PLOS ONE

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

Reviewer #1: All comments have been addressed

Reviewer #2: All comments have been addressed

**********

2. Is the manuscript technically sound, and do the data support the conclusions??>

Reviewer #1: Yes

Reviewer #2: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously? -->?>

Reviewer #1: Yes

Reviewer #2: Yes

**********

4. Have the authors made all data underlying the findings in their manuscript fully available??>

The PLOS Data policy

Reviewer #1: Yes

Reviewer #2: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English??>

Reviewer #1: Yes

Reviewer #2: Yes

**********

Reviewer #1: Dear Authors, thank you for addressing the proposed changes. I consider this research a valuable contribution to the knowledge on the diversity of the genus Russula in Thailand.

Reviewer #2: All my comments were properly addressed and manuscript was improved accordingly. I still recommend thorough review of the manuscript for small typos, but other than that I do not have any other comments

**********

what does this mean? ). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy

Reviewer #1: No

Reviewer #2: No

**********

Formally Accepted
Acceptance Letter - Erika Kothe, Editor

PONE-D-24-43558R1

PLOS ONE

Dear Dr. Raspé,

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PLOS ONE

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