Peer Review History

Original SubmissionJanuary 11, 2024
Decision Letter - Bashir Sajo Mienda, Editor

PONE-D-24-01082Saturated Transposon Analysis in Yeast as a One-step Method to Quantify the Fitness Effects of Gene Disruptions on a Genome-Wide ScalePLOS ONE

Dear Dr. Laan,

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Bashir Sajo Mienda, PhD

Academic Editor

PLOS ONE

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Reviewers' comments:

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Comments to the Author

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Reviewer #1: Yes

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2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: I Don't Know

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Reviewer #1: Yes

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Reviewer #1: Yes

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5. Review Comments to the Author

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Reviewer #1: #Review Report#

Dear Editor.

Thank you for the opportunity given to me to review this manuscript titled “Saturated Transposon Analysis in Yeast as a One-step Method to Quantify the Fitness Effects of Gene Disruptions on a Genome-Wide Scale” for publication in your PLOS ONE Journal. I have reviewed the manuscript and found it quite interesting. The manuscript is well-composed. The dataset therein is technically sound. There is enough justification to affirm the originality of the work done; the numerical figures of the various analytical factors have been reported with a reasonable degree of accuracy. The aim of the work, as outlined in the introductory part and illustrated in Figure 1 of the manuscript has been sufficiently achieved. On the general note, the work has underscored the critical role of saturated transposon analysis in quantification of fitness effect of gene disruption on a genome-wide scale, which could undeniably help in advancing the knowledge of functional genomics, particularly in the construction of genetic interaction maps. In my opinion, the manuscript has met both the scientific and ethical standards for inclusion in the publication of scientific record. However, I have outlined few comments below that could help improve the quality of the manuscript.

Comments:

1. P2/36. L75. The word “the” Consider removing one.

2. P6/36. L235. The word figure should be written with initial capital letter to make it consistent with the other usage in the manuscript.

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Reviewer #1: No

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Revision 1

Comments from reviewer #1: Dear Editor. Thank you for the opportunity given to me to review this manuscript titled “Saturated Transposon Analysis in Yeast as a One-step Method to Quantify the Fitness Effects of Gene Disruptions on a Genome-Wide Scale” for publication in your PLOS ONE Journal. I have reviewed the manuscript and found it quite interesting. The manuscript is well-composed. The dataset therein is technically sound. There is enough justification to affirm the originality of the work done; the numerical figures of the various analytical factors have been reported with a reasonable degree of accuracy. The aim of the work, as outlined in the introductory part and illustrated in Figure 1 of the manuscript has been sufficiently achieved. On the general note, the work has underscored the critical role of saturated transposon analysis in quantification of fitness effect of gene disruption on a genome-wide scale, which could undeniably help in advancing the knowledge of functional genomics, particularly in the construction of genetic interaction maps. In my opinion, the manuscript has met both the scientific and ethical standards for inclusion in the publication of scientific record. However, I have outlined few comments below that could help improve the quality of the manuscript. Comments: 1. P2/36. L75. The word “the” Consider removing one. 2. P6/36. L235. The word figure should be written with initial capital letter to make it consistent with the other usage in the manuscript. We thank the reviewer for their interest in our work and are grateful for their careful reading of our manuscript. We have removed the duplicate word “the” from L75 and replaced the word “figure” with “Fig” to adhere to the PLOS ONE guidelines for figures. Other changes to the manuscript:

1. Changed the in-text reference “Figure 6” to Fig 5 on L351.

2. Removed the subsection number that appeared before the subsection title on L360-L361.

3. Added “BUD4 from S288C” to the genotype of strain yWT01 in Table S1.

4.

Added the labels "a)" and "b)" to the panels of figure Fig7

Decision Letter - Bashir Sajo Mienda, Editor

Saturated Transposon Analysis in Yeast as a One-step Method to Quantify the Fitness Effects of Gene Disruptions on a Genome-Wide Scale

PONE-D-24-01082R1

Dear Dr. LAAN,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

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Kind regards,

Bashir Sajo Mienda, PhD

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Formally Accepted
Acceptance Letter - Bashir Sajo Mienda, Editor

PONE-D-24-01082R1

PLOS ONE

Dear Dr. Laan,

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Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Bashir Sajo Mienda

Academic Editor

PLOS ONE

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