Peer Review History
Original SubmissionJune 15, 2022 |
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PONE-D-22-17171Assessment of the transmission blocking activity of antimalarial compounds by membrane feeding assays using West-African patient-derived Plasmodium falciparum gametocytesPLOS ONE Dear Dr. SOULAMA, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Two experts who know membrane feeding experiments very well commented that this work is very important but the information in this manuscript is not enough for the readers. So, I also encourage the Authors to consider all the Reviewers' comment for the improvement. Please also provide point-by-point response. Please submit your revised manuscript by Oct 13 2022 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Kind regards, Takafumi Tsuboi Academic Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Thank you for stating the following financial disclosure: No, the funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. At this time, please address the following queries: a) Please clarify the sources of funding (financial or material support) for your study. List the grants or organizations that supported your study, including funding received from your institution. b) State what role the funders took in the study. If the funders had no role in your study, please state: “The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.” c) If any authors received a salary from any of your funders, please state which authors and which funders. d) If you did not receive any funding for this study, please state: “The authors received no specific funding for this work.” Please include your amended statements within your cover letter; we will change the online submission form on your behalf. 3. Thank you for stating the following in the Acknowledgments Section of your manuscript: This work was supported by grants from the Dutch PDP fund, Medicines for Malaria Venture and Italian cooperation in Burkina Faso. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. We note that you have provided funding information that is not currently declared in your Funding Statement. However, funding information should not appear in the Acknowledgments section or other areas of your manuscript. We will only publish funding information present in the Funding Statement section of the online submission form. Please remove any funding-related text from the manuscript and let us know how you would like to update your Funding Statement. Currently, your Funding Statement reads as follows: No, the funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. Please include your amended statements within your cover letter; we will change the online submission form on your behalf. 4. Please include your tables as part of your main manuscript and remove the individual files. Please note that supplementary tables (should remain/ be uploaded) as separate "supporting information" files [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: No Reviewer #2: N/A ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: No ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors developed an indirect membrane feeding assay (indirect-MFA), where researchers can test transmission-blocking activity of antimalarial drugs with field gametocytes after 24-hour incubation, and compared IC50 of several drugs between the indirect-MFA and standard membrane feeding assay (SMFA) with laboratory-adapted NF54 parasites (a gold standard method at this moment). While their scientific approach is reasonable, the major results are missing in the current manuscript; i.e., the authors did not submit Table 1. Therefore, this reviewer cannot assess whether their statements are supported by the data. Furthermore, while the development of indirect-MFA is one of major points of this manuscript, the method section is not satisfactory. Thus, it is difficult for other researchers to use the new assay. Major comments; 1) Please submit Table 1, and show statistical results (e.g., Pearson correlation coefficients and p-values) to support the conclusion; good agreement in IC50 among Gametocyte viability assay, indirect-MFA and indirect-SMFA (in Line 266-268). 2) Method for indirect-MFA Please describe the method in detail so that readers can use the assay. More specifically; During the 24-h incubation (a) medium; Was it pure RPMI (based on Line 202), or same as NF54 culture medium (including hypoxanthine, HEPES and sodium bicarbonate; Line 158-160), or something else? (b) container; flask, tube or plate to keep the infected blood (c) hematocrit; was the blood diluted at a certain ratio, or same ratio of RBC/serum in the original blood? (d) IC50 was pre-determined to set 0.1x, 1x and 10x IC50 concentrations. But it is not clear how IC50 for each drug was estimated; IC50 in prevalence of infected mosquitoes or that for oocyst density? What assay (and which strain of parasites) was used to determine the value? Did you use a value from publication (if so, cite the paper), or did you use your own data? For the feed, (e) composition of feeding samples; If 100% of the liquid part was replaced by a malaria naïve serum after the 24-h incubation, then there was no room to mix the test drug. Was it a mixture of XX%v/v of human serum and XX%v/v of drug solution in RPMI? And what was the hematocrit of final feeding samples? Minor comments; 3) Can Indirect-MFA check gametocytocidal activity? Since there was no evaluation for gametocytemia or exflagellation after the 24-h drug treatment, from the lower infection prevalence, we cannot tell whether the drug has sporontocidal activity, gametocytocidal activity, sterilizing gametocytes, or mixture of them. For example, if a drag kills gametocytes during the 24-h incubation (gametocytocidal), the final gametocytemia should be lower than that in the starting blood, but it was not evaluated. On the other hand, a drug may just reduce female fertilization activity (which is technically very difficult to measure) without killing them. In any case, it is impossible to tease out the mechanism of action from the described indirect-MFA method. Please fix all related text in Introduction, Results and Discussion sections. 4) “overnight” incubation? People usually think “overnight” means ~10-12-h, not 24-h. To avoid the confusion, please do not use a word of “overnight” throughout the paper. 5) Gametocyte viability assays Based on the method section (Line 161-163), two types of gametocytes (early and late gametocytes) were prepared. But I guess Gametocyte viability assays were performed only using late gametocytes. If so, where did the authors use the “early gametocyte”? In addition, for clarity, please specify that the assay was done with NF54, such as, we performed full dose response gametocyte viability assays with “NF54” for selected compounds (Line 263-264). 6) What is “indirect SMFA”? In Line 254, a term of “SMFA” is written, but another term “indirect SMFA” is seen in Line 267. Are they the same? If so, please use the same terminology to avoid a confusion. If different, please use different words, e.g., “direct SMFA” and “indirect SMFA”. In addition, I guess “indirect SMFA” means that an assay where NF54 parasites are pre-incubated with a test drug for 24 h before feed, but please clarify. 7) Bars and error bars For all figures, please explain what bars (e.g., average, median, geometric mean) and error bars (e.g., sd, sem, 95%CI) mean. 8) Fig 4 Same as Fig 3, “paired” data points (same donor’s blood were treated with DMSO or drug for 24-h) should be linked. Without the lines, readers cannot interpret the results. For example, the authors conclude that no inhibition by Atovaquone for one isolate (Line 312-313). But if the infection rate for the one isolate changed from ~70% (the highest point in DMSO) to ~30% (the highest point in 100 nM drug), then the conclusion should be different. In addition, a paired test should be used for the statistical analysis (please specify the name of statistical test). Once the authors do so, I’m afraid conclusion may change, e.g., there could be a significant reduction by Methylene blue (and also by DHA). Please revise the related text if needed. 9) Typo Line 173; 10 to the power of 4, not 104 Line 173, 174 and 176; 30 microliter, not 30 mL Line 247; to determine the “infection rates”, not “oocyst intensities” (no TRA data in this paper). Line 307, take out “on” Line 320 and 334; the format of citation is wrong. Reviewer #2: This is paper describes a method to determine transmission reducing activity of test compounds against P. falciparum isolates. Overall the authors have done an admirable job. Testing field isolates are logistically challenging but very important. I have comments below to improve the manuscript and make it more transparent to readers. 1) The writing could be polished by a native English user. In several places, the tense is in appropriate and the article is missing. Words such as mosquitoes/mosquitos or transmission blocking/transmission-blocking should be harmonized throughout the manuscript. 2) There is no description of how the transmission blocking experiment was done on 3D7/NF54 gametocytes (i.e. the Indirect-SMFA). I am not sure if the data are original to the study, or referred to published work. Please provide the details of this experiment in the method (if original data), or in the discussion (if from previous studies). I ask this because it is not clear whether indirect-SMFA is comparable to Indirect-MFA. Did the experiment use enriched gametocytes, and if so, early gametocytes or late gametocytes? Was the treatment also for 24 hours in the same culture medium? Without these details, it’s difficult to know whether the discrepancy in the results of 3D7/NF54 vs field isolates was due to biological (i.e. isolate-to-isolate) differences or the technical aspects of the assays. 3) Line 109: Were the participants treated for malaria after providing 9 ml blood? 4) Figures 1 & 2 are not clear. The arrow after the 24 hour incubation should point to the mosquito feeding cup. 5) Malaria naïve serum used for a) the 24 hr culture medium or b) plasma/RPMI replacement before MFA: was it from an AB blood group donor? Please clarify this in the method section. 6) Line 116: “In D0 DMFA” Should this be D1 DMFA? 7) Under the method section: Please add statement that, for Indirect DMFA, naïve serum containing the test compound at the test concentration was used to replace the medium before membrane feeding. 8) Keywords: Anopheles coluzzii? I thought the experiments used An. gambiae throughout. 9) Although the term ‘indirect DMFA’ is understandable in the context of this study (lines 351/362), the full acronym is ‘indirect direct membrane feeding’ is rather confusing.. I would suggest just using “indirect MFA” throughout the manuscript. 10) Line 245: Please elaborate clearly that these IC50 represents the IC50 of 3D7 gametocytes in the membrane feeding assay. 11) Line 245: Please elaborate what ‘duplicate’ means. Does it mean two feeders per isolate? 12) Table 1 was not available to reviewer (i.e. missing). 13) It would help reader to harmonize the order of compounds in Figures 5 and 6. 14) Line 154: Were dissection also done in plain distilled water? If not, please elaborate whether there is any impact of using water instead of PBS. 15) All analyses were on the infection rate. Because the numbers of oocysts were recorded (line 154), it would be good to analyze the data using the mean oocyst density (i.e. to determine the transmission-reducing activity rather than the transmission-blocking activity). This is probably a more linear/robust readout of % reduction of gametocyte infectivity. 16) Gametocyte viability assay: did it use early gametocytes or late gametocytes that were described in the parasite culture section? 17) Line 173: 3.5*104: superscript 4? 18) Discussion: A curious minds will want to know why incubation in whole blood for 24 hour led to loss of transmissibility. Would be nice to offer some speculation in the discussion. Was it possible that the parasites were simply eaten/destroyed by white cells? 19) Line 232: It may help to quickly state the effect of these compounds on 3D7 gam transmission (if data/references are available) to provide some mental calibration to understand where the data stand. 20) Line 290: “for during 24 hours at least” Please soften the claim. There is not strict requirement for this. Although 24 hours is useful, someone might say 20 hours is sufficient. 21) Line 308: please provide reference for “In the absence of a pre-incubation with gametocytes, DHA, MM048 and Methylene Blue on did not affect infectivity of field gametocytes.” 22) Line 334, please reformat the reference. 23) Line 361 “this could explain our result”. Please elaborate further. I agree that the effect on early gam could explain the lack of inhibition in Indirect-MFA using field isolates. But does this also mean that the blockage of 3D7 by DHA (as mentioned on line 255) was because the experiment was performed using early gametocytes? Readers would want you to help dispel the source of discrepancy between 3D7 and field isolates. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
Revision 1 |
PONE-D-22-17171R1Assessment of the transmission blocking activity of antimalarial compounds by membrane feeding assays using natural Plasmodium falciparum gametocyte isolates from West-AfricaPLOS ONE Dear Dr. SOULAMA, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Thank you very much for the efforts to significantly improve this manuscript. However, the Reviewer 1 still have minor comments to further improve the manuscript. Please consider these comments and prepare re-revised manuscript. Please submit your revised manuscript by Apr 14 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols. We look forward to receiving your revised manuscript. Kind regards, Takafumi Tsuboi Academic Editor PLOS ONE Journal Requirements: Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: (No Response) Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: No Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors replied to majority of my concerns appropriately, and clarity of the manuscript has been improved significantly. However, this reviewer thinks further minor modifications are required before publication. 1) Statements are not fully supported by the data 1-a) Fig 3 and interpretation of the results First, data where zero prevalence in the DMSO control should be excluded from the statistical analysis (such as PYR with Donor 3 and 4), as we cannot tell whether there was not drug effect or not. Having said that, it is OK to include such data in the figure if the authors want to show how many assays had zero prevalence in the controls. Second, insignificant results by the Wilcoxon matched-pairs signed rank test are not interpreted appropriately (while the selection of the statistical test is reasonable). Based on the test, unless there are >5 pairs, the statistical results are always insignificant (i.e., even if each of all 5 paired data showed reduction from 100 to 0%, p=0.0625). The reason to see “significant” differences only in ATQ and P218 was because the two drugs were tested with 6 donors’ parasites. For MB, PYR, FQ and LUM, all donors’ parasites (4 out of 4) showed reductions in prevalence, so it is possible that the 4 drugs (at least some of them) could also show “significant” reductions if they were tested with 6 donors’ parasites. Line 303-307 and 422-425 should be rewritten, considering the limitation of the study design. In addition, “ns” in Fig 3 should be removed for drugs with <6 pairs. General readers think “ns” means no difference, instead of not enough statistical power. 1-b) Correlations among the three assays (Table 1, Line 358-360, and Line 475-476) It is reasonable to conclude that there was a significant correlation between SMFA and TB-DMFA (Spearman rank correlation coefficient of 0.92 with p=0.0004, excluding DHA data). But the conclusion written in Line 475-476 is opposite. A fair conclusion from this study is that there is a strong correlation between the two assays, except for DHA. Second, there is no correlation at all between TB-DMFA (or SMFA) and gametocyte viability assay by a Spearman rank test (p=0.777). Therefore, Line 358-360 seems incorrect, unless the authors checked the correlation differently (in such a case, please specific how it was tested). 1-c) Line 339; not only DHA, Ferroquine showed > one-log difference in IC50 between the two assays 1-d) Line 357; non only atovaquone, SJ733 did not show full inhibition. 2) Table 1 Since comparing the three assays is the one of main point of this study, please add 95%CI of IC50 estimates, at least for TB-DMFA data. Showing the 95%CI helps readers to intuitively understand whether 38 (SMFA) and 167 (TB-DMFA) for MMV693183 are truly different, or within the error of estimates, for example. In addition, please replace from “GCT-DMFA” to “TB-DMFA” 3) Exclusion of zero prevalence data from IC50 analysis (Fig 4) Same as above point 1-a), such data should not be included for IC50 analysis. The authors might do so, but not written in the current text/figure/supplement 4) How to describe TB-DMFA In Fig 1, please add “sporontocidal effect” for TB-DMFA (only “gametocyte effect” is written in the current figure). For clarity, at least in Line 326 and 345, please specify that the drug were added to the feeders as well. Readers, who do not read the method section carefully, could misunderstand that there was no drug in the blood samples which were fed to mosquitoes. 5) Replace (or take out) “overnight” incubation to “24 hour” incubation. While the authors fixed the most of them, “overnight” are still seen in Line 39, 254 and 256 Reviewer #2: (No Response) ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
Revision 2 |
Assessment of the transmission blocking activity of antimalarial compounds by membrane feeding assays using natural Plasmodium falciparum gametocyte isolates from West-Africa PONE-D-22-17171R2 Dear Dr. SOULAMA, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Takafumi Tsuboi Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: |
Formally Accepted |
PONE-D-22-17171R2 Assessment of the transmission blocking activity of antimalarial compounds by membrane feeding assays using natural Plasmodium falciparum gametocyte isolates from West-Africa Dear Dr. Soulama: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Prof. Takafumi Tsuboi Academic Editor PLOS ONE |
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