Peer Review History
Original SubmissionJuly 8, 2019 |
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PONE-D-19-19116 Decreased risk of Parkinson’s disease in diabetic patients with thiazolidinediones therapy: A meta-analysis PLOS ONE Dear Dr. Baorong Zhang, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. ============================== ACADEMIC EDITOR: The reviewers have raised a number of points which we believe major modifications are necessary to improve the manuscript, taking into account the reviewers' remarks. Please consider and address each of the comments raised by the reviewers before resubmitting the manuscript. This letter should not be construed as implying acceptance, as a revised version will be subject to re-review. ============================== We would appreciate receiving your revised manuscript by Sep 26 2019 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols Please include the following items when submitting your revised manuscript:
Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. We look forward to receiving your revised manuscript. Kind regards, Wisit Cheungpasitporn, MD, FACP University of Mississippi Medical Center Twitter: @wisit661 Email: wcheungpasitporn@gmail.com Academic Editor PLOS ONE Journal requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at http://www.journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and http://www.journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf 2. Please provide the full electronic search strategy for at least one database, including any limits used, such that it could be repeated. 3. Please note that according to our submission guidelines (http://journals.plos.org/plosone/s/submission-guidelines), outmoded terms and potentially stigmatizing labels should be changed to more current, acceptable terminology. For example: “Caucasian” should be changed to “white” or “of [Western] European descent” (as appropriate)." [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Yes Reviewer #3: Partly Reviewer #4: Yes Reviewer #5: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: I Don't Know Reviewer #2: I Don't Know Reviewer #3: Yes Reviewer #4: I Don't Know Reviewer #5: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: No Reviewer #4: Yes Reviewer #5: No ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes Reviewer #4: Yes Reviewer #5: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors present the outcomes of a meta-analysis on 5 cohort studies assessing the incidence of Parkinson’s disease in diabetic patients receiving or not receiving thiazolidinedione (TZD) treatment. The outcomes indicate that TZD use leads to a reduced incidence of PD in diabetic patients. However, this conclusion is based on a small number of studies with great (89%) heterogeneity, which seemed to reduce to acceptable levels after removal of 1 study. The topic of this work is timely and of clinical interest. Overall the manuscript is well written, although further methodological detail is required. The review also does not appear to have been prospectively registered. Below I provide my comments per section of the manuscript. I also highlight what information is missing according to the PRISMA 2009 checklist provided by the authors. S=sentence. Abstract: -S50: Please specify what is meant by ‘more strict inclusion criteria’. -PRISMA: Please report: ‘study eligibility criteria’ + ‘limitations’ + ‘registration number’. For synthesising the methods, please also specify what type of studies were included (i.e. retrospective cohort studies) + the outcome of interest (i.e. OR). Introduction: -S55 ‘early prominent loss’: I suggest removing the word ‘early’ from this statement, given that much earlier degeneration already occurs at the brainstem level. -S61-63 ‘Thiazolidinediones…diabets’: Please provide citation. -S67 ‘Nevertheless, one RCT…’ Please specify this study assessed disease progression in 'early' PD patients. -S70: Does this statement warrant citations? -S70-72: Optional -> Consider adding a statement to the introduction about how observational cohort studies can provide useful information besides RCT’s (e.g. in terms of generalizability due to larger and wider-spread samples + perhaps that the outcomes from cohort studies may inform future RCT’s). Methods: -S77: Suggest to change ‘were used’ to ‘were screened for eligible studies’ -S79: For replication purposes it would be helpful to provide the exact syntax for the search strategy used per engine in a supplementary document. -S89: ‘(3) the diagnosis…was definite’ Please specify what is meant with ‘definite’, i.e. according to what diagnostic criteria? Was diagnostic criteria part of the eligibility criteria? -S92: Please specify what attempts were made to contact corresponding authors to obtain any incomplete data. -S92: Exclusion criteria (2) ‘studies that did not provide valid data’ can be interpreted in many ways. Please specify or provide examples to indicate what you mean by ‘valid data’. -S94-97: ‘Data extraction’ should include the incidence of PD to calculate the OR. -S100: ‘Finally… studies’ This should be placed in the Results section. -S110-S112: ‘A random-effects…heterogeneity’. This statement is confusing, as to my knowledge either a random-effects or a fixed-effects model can be applied across all studies, not per study as the authors indicate here. -S122-123: ‘which were not related to the topic’. I suggest to change this to ‘which did not meet eligibility criteria’ -PRISMA: Point 5 is not covered in the manuscript (online protocol/registration). Results: -S157-159: ‘With regard…incidence of PD’. I think it is good to highlight again here that only 1 study assessed the use of pioglitazone so that the reader knows the finding should be interpreted with caution. -The authors could only include a total of 5 studies. I therefore wonder whether this meta-analysis should be termed ‘exploratory’ in the manuscript. -The authors conduct several sub-group analyses with the aim to determine the source of heterogeneity. To my knowledge, the rationale for performing such sub-analysis is more often to indicate how the main effects change when taking certain factors (e.g. ethnicity, type of drug, etc.) into account, not per se for assessing heterogeneity. Indeed, from these results the authors were not able to make any firm interpretation about heterogeneity. Instead, later when they perform a sensitivity analysis, it soon became clear that the source of heterogeneity is driven by 1 of the 5 studies. Therefore, I wonder whether the sub-group analysis section is currently written with the right scope, and whether the sensitivity analysis should be placed prior to the subgroup analyses section. -S174-175: ‘Indicating that follow-up contributed little to the heterogeneity’. However, if heterogeneity is 0% for the studies with <10 years follow-up and 92% for studies with >10 years follow-up, does this not indicate that follow up period does have an effect on heterogeneity? The same goes for ethnicity, where the heterogeneity decreased by 50% in the Caucasian cohorts. -S175-181: The studies are divided based on a quality score on the NOS of <7 or ≥7 points. However, the range across the studies is 6-8 points. I therefore wonder whether this sub-group analysis is informative. In other words, I wonder how much impact a difference in 1-2 points on the NOS has on study quality. -S202-204: The authors assessed risk of bias using funnel plots. However, in section 10.4.3.1 of the Cochrane handbook (v5.1), it is stated that “As a rule of thumb, test for funnel plot asymmetry should be used only when there are at least 10 studies included in the meta-analysis, because when there are fewer studies the power of the tests is too low to distinguish chance from real asymmetry”. Therefore the inclusion of a funnel plot in this manuscript may lead to incorrect interpretation. This should be clearly mentioned as a limitation in the discussion section and added as a footnote to Figure 3. -Figure 2: Please add a description in the footnote what the terms ‘Events’, ‘Total’, and ‘M-H’ stand for. -Figure 3: It now seems that from n=6 records screened, n=44 were excluded. The horizontal arrows should originate from the previous box. In other words, the n=44 excluded box should originate from the n=50 box, not the n=6 box, etc. Discussion: -S229-231: ‘A lower incidence of PD was observed in females than in males’. Could the authors not perform a subgroup analysis to test the impact of sex (male, female) on the OR and heterogeneity? -S241-242: It seems appropriate to highlight the study by Simuni et al. (2015) again here, which indicated that TZD use did not modify disease progression in early PD -S247-249: Could the authors report any information about the dosages applied in the 5 included studies, perhaps median (range) dosages? I understand this information may be difficult to retrieve. Reviewer #2: 1) Need references for the previous studies that have conducted meta-analyzes in the Introduction. 2) Please expand on how the inclusion critieria could be made more strict. 3) Quality assessment of cohort studies: What was the proportion of studies that had disagreement and/or sent out to third reviewer? How were these resolved? 4) How many of the cohorts were studied by the same authors? Any potential lab bias? The average reader may not be familiar with interpreting funnel plots for publication bias. Could the authors please provide explanation in the methods? 5) How many of the cohorts overlapped with previous meta-analyses? 6) The manuscript could benefit with a clearer explanation as to why the meta-analyses conducted in their study is more definitive than the previous studies. Does it all come down to sample size and/or the methodology of the analyses? Reviewer #3: INTRODUCTION The study presented by the authors is is one of the first meta-analyses demonstrating the relationship between TZDs use and the incidence of PD in diabetic patients. There however are several challenges, most prominently the limited number of high quality studies available at this time, and especially the heterogeneity of disease phenotypes and treatment approaches both in DM and PD, turning these kind of analyses into a challenging endeavor at this point in time. Although the authors do mention the challenges, these are not sufficiently addressed and explained up front. In addition, one significant clinical data set [Simuni et al. Lancet Neurol. 2015 August ; 14(8): 795–803. doi:10.1016/S1474-4422(15)00144-1], although cited in the introduction (reference 8), is excluded from the meta-analysis for unspecified reasons. MATERIALS AND METHODS: Inclusion/Exclusion Criteria: Given the difficulty to define accurate disease states in DB and PD (definition of ‘definite diagnostics’?), the inclusion criteria by which valid studies were selected regarding disease staging/diagnostics/confounding variables, should have been at least outlined. Ideally, cut-off diagnostic criteria (e.g. Braak staging for PD, diabetes complication severity index for DM) could have been considered for data stratification. Apart from the importance of disease diagnostic criteria, pharmacological criteria of the different TZDs should be explained and discussed, as the two most used TZDs, pioglitazone and rosiglitazone, differ in both pharmacological as well as medical efficacy, likely influencing both DB and PD disease diagnosis and progression. Similar considerations apply for use of compound medications (sulfonylurea and Metformin) in the studies analyzed. Data Extraction: Quality of Meta-analyses heavily relies on the protocols used for data extraction, especially when a number of confounding variables (compounded treatment of different TZDs and medications are at play. The nature of assessment and data extraction protocols should be explained, including both selection criteria and their rationale. Handling of conflict, e.g. when disagreement occurred between reviewers regarding Selection and Data Extraction protocols/definition, naming of the third reviewer consulted would be informative. STATISTICAL ANALYSIS: It is not clear how and when fixed and random effects models were applied for the analysis. How was decided which model to use for the individual analyses (Hausman Test?). One approach to study diversity would be to apply the random-effects model only and then report the expected range of true effects over the populations and interventions sampled. This could be in form of a prediction interval. The problem with only a few studies to work with is that it is difficult to know how the dispersion actually manifests itself. This section should be expanded. When based on a small number of studies, estimating the between-studies variance (T2) should be conducted to substantiate the error, as this has important implications for many aspects of the analysis. Regarding using Odds Ratio (OR) over risk ratio (RR): It has been shown that RR is more intuitive than the odds ratio (OR) and that OR tend to be interpreted as RR by clinicians, which leads to an overestimate of the effect. RESULTS: More detailed legends to the Figures (particularly Figure 2) would be extremely helpful. Search Results and Study characteristics: A more detailed flow diagram would help to better understand the selection process and criteria applied. Meta-analysis of incidence of PD: The conclusion that follow up duration regarding diagnosis plays no role in study heterogeneity is contradicting PD and DM disease development. These statistical findings give first indications to very broadly defined inclusion / exclusion criteria, especially when considering the observed reduced heterogeneity when excluding the large Lin et al. data set. Sensitivity analysis and publication bias: Assessment of the risk of bias (or “quality”) should include the study model constructs being assessed, a definition for each, and reviewer judgment options (high, low, unclear). Finally, the potential influence of this bias and its incorporation into data synthesis, as well as their potential influence on findings of the meta-analysis (“high risk’, ‘low risk’) should be discussed. DISCUSSION: Given the confounding variables and limited number of comparable data sets, the unclear stratification of data and the analysis model(s) employed, the meta-analysis as presented does not allow for a conclusion regarding the general benefit of TZDs in PD. The analytical data presented suggest that that stricter and more precise stratification criteria (most prominently exhibited by the authors post-analysis suggestion of sex-specific differences as contributors to heterogeneity) could allow for inclusion of the Lin et al. study data, and significantly improve the quality of the meta-analysis. Furthermore, including the Simuni et al. study could increase the power of the meta-analysis significantly. These improvements and changes would certainly contribute to a more concise and powerful data set, allow better analysis of heterogeneity and it’s sources, and would more accurately describe the general consensus and state of knowledge regarding the use of TZDs as supportive treatment strategy for PD. Reviewer #4: This paper addresses an interesting but as of yet still uncertain link between use of thiazolidinediones and protective effects on Parkinson's disease. Several preclinical studies have suggested potential benefits of this class of drug and/or its various mechanistic targets including PPARgamma. However, an NIH-funded, Phase II exploratory trial did not find benefit of the drug on disease progression in people with PD. To address this issue, authors have performed a meta-analysis of five identified studies looking at PD risk in diabetics taking thiazolidinedione treatments (glitazones) compared to non-users or users of other diabetic treatments. Authors identify what appears to be a modest protective effect in pooled analyses although heterogeneity across the studies was high. Subgroup analyses did not identify any obvious sources to explain heterogeneity although authors suggest that one of the studies from Lin et al. (which had reported the greatest protective effect) may be, not surprisingly, the primary source of heterogeneity. Removing this study from the analysis reduces the variability and strengthens the statistical significance but also reduces the magnitude of the pooled 'protective' effect. Authors rightfully raise concerns about the limited number of retrospective studies identified as well as other factors (e.g., severity and duration of diabetes across the study populations) that could be a factor. Also, as the diagnosis of motoric PD is likely preceded by an extended period of prodromal disease, issues of reverse causation in studies of this kind (i.e., that diabetics with 'early as yet undiagnosed PD' could be subtly different than diabetics without signs of PD leading to different medication use and overall treatment differences) cannot be ruled out and authors may wish to comment a bit on this aspect. I also am curious about the two studies from Taiwan and whether authors can assess potential for overlapping study population (essentially partially duplicated publication)? Although the two studies in Taiwan reported different outcomes, assessing this potential cohort overlap may be important. Also, in the Newcastle-Ottawa scale assessment, could the authors comment a bit more on those aspects that were not star rated (e.g., Comparability and Adequacy of follow-up)? Do these raise concerns about several of these studies even though overall ratings were considered to be "high quality"? Overall, I think these types of meta-analyses are important for clarifying potential promise of these kinds of treatments although given a number of high-profile recent failures of trials looking at treatments built on reasonably strong epidemiological associations for PD (e.g., blood urate levels, calcium channel blockers), I worry that simple meta-analyses of results will not be sufficient to justify the time and expense of large RCTs and additional biological and/or more detailed retrospective analyses will be needed. Reviewer #5: 1. This meta-analysis has not been registered online. Please add this point in the limitation. 2. Literature Searches and Search terms are incomplete. This is suboptimal for publication for systematic review. Search terms in Cochrane Central Register of Controlled Trials (CENTRAL), PubMed, Web of Science, and Embase are different. Please attach search terms that were used in each database as supplement for Data source and search strategies in the manuscript. Please provide details search terms in supplementary documents. Please attach syntax used in each database as supplementary. 3. There is substantive heterogeneity in some outcomes. It also is unclear whether the t-statistic is being used for the degrees of freedom in the random effects analysis (i.e., N-1 d.f. not asymptotic [1.96] value multiplied by tau). Please assure that the t-statistic (or Satterthwaite correction) is being used and add that information to the Methods, when the number of studies is small (e.g., < 10). Apply this principle throughout the author's paper. For reference, the authors can refer the article “IntHout J, Ioannidis JP, Borm GF. The Hartung-Knapp-Sidik-Jonkman method for random effects meta-analysis is straightforward and considerably outperforms the standard DerSimonian-Laird method. BMC Medical Research Methodology 2014;14:25.” The issue is the Student t statistic. 4. Authors should discuss the reason of heterogeneity. 5. It will be better to show kappa for the selection and data extraction. Please show the data of kappa of agreement during the systematic searches. How disagreements were solved during the systematic search among two independent reviewers? 6. I recommend the authors apply the ROBINS-I (Risk of Bias in Nonrandomized studies of Interventions) tool in addition to NOS. The authors already applied the Newcastle Ottawa Scale, which is a validated tool and was an acceptable choice. However, to enhance the reproducibility and comparability of this review to future reviews of a similar topic (possibly an update of this review) I recommend including a risk of bias assessment using ROBINS-I, since it is the newest and most robust method of assessing risk of bias in systematic reviews/meta-analyses. 7. Please make the data for this review publicly available, possibly through the Open Science Framework (osf.io). Items to include: list of excluded studies, commands for statistical analysis, spreadsheets or data used for the meta-analyses, etc. Making data publicly available will promote the reproducibility of the review and is best practices for systematic reviews and meta-analyses. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. 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Revision 1 |
Decreased risk of Parkinson’s disease in diabetic patients with thiazolidinediones therapy: An exploratory meta-analysis PONE-D-19-19116R1 Dear Dr. Baorong Zhang, We are pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it complies with all outstanding technical requirements. Within one week, you will receive an e-mail containing information on the amendments required prior to publication. When all required modifications have been addressed, you will receive a formal acceptance letter and your manuscript will proceed to our production department and be scheduled for publication. Shortly after the formal acceptance letter is sent, an invoice for payment will follow. To ensure an efficient production and billing process, please log into Editorial Manager at https://www.editorialmanager.com/pone/, click the "Update My Information" link at the top of the page, and update your user information. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, you must inform our press team as soon as possible and no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. With kind regards, Wisit Cheungpasitporn, MD, FACP, FASN University of Mississippi Medical Center Twitter: @wisit661 Email: wcheungpasitporn@gmail.com Academic Editor PLOS ONE Additional Editor Comments: I want to commend the authors on their superb efforts to revise the manuscript according to all reviewers’ suggestions. The quality of the manuscript has improved substantially. Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #2: All comments have been addressed Reviewer #3: All comments have been addressed Reviewer #5: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #2: Yes Reviewer #3: Yes Reviewer #5: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #2: Yes Reviewer #3: Yes Reviewer #5: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #2: Yes Reviewer #3: Yes Reviewer #5: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #2: Yes Reviewer #3: Yes Reviewer #5: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #2: (No Response) Reviewer #3: I thank the author(s) for addressing my questions and concerns. Given the changes made and the major concerns being addressed, I have no further reservations regarding publication of the revised version of the manuscript. Reviewer #5: All my concerns have been fully elucidated, missing sections and analyses have been completed. Finally, comprehension errors have been corrected. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #2: No Reviewer #3: No Reviewer #5: No |
Formally Accepted |
PONE-D-19-19116R1 Decreased risk of Parkinson’s disease in diabetic patients with thiazolidinediones therapy: An exploratory meta-analysis Dear Dr. Zhang: I am pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please notify them about your upcoming paper at this point, to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. For any other questions or concerns, please email plosone@plos.org. Thank you for submitting your work to PLOS ONE. With kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Wisit Cheungpasitporn Academic Editor PLOS ONE |
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