SNP Trait PMID P.value Population Array chr hg19_pos class avHet func alleles alleleFreqs markername MegaChip.PassedQC rs1019503 2hGlu 22885924 8.87E-09 European MetaboChip chr5 96254816 single 0.499484 untranslated-3 A,G, 0.486309,0.513691, 5:96254817 1 rs10195252 FI-adjBMI 22885924 1.26E-16 European MetaboChip chr2 165513090 single 0.479779 unknown C,T, 0.430392,0.569608, 2:165513091 1 rs10195252 FI 22885924 4.87E-10 European MetaboChip chr2 165513090 single 0.479779 unknown C,T, 0.430392,0.569608, 2:165513091 1 rs10401969 T2D 22885922 7.00E-09 European MetaboChip chr19 19407717 single 0.190347 intron C,T, 0.115569,0.884431, 19:19407718 1 rs10468017 Lipids 23555291 2.99E-06 European MetaboChip chr15 58678511 single 0.331064 unknown C,T, 0.804734,0.195266, 15:58678512 1 rs10747083 FG 22885924 7.57E-09 European MetaboChip chr12 133041617 single 0.371067 unknown A,G, 0.764023,0.235977, 12:133041618 1 rs10811661 T2D 24013783 5.00E-08 TaiChi MetaboChip chr9 22134093 single 0.327307 unknown C,T, 0.204724,0.795276, 9:22134094 1 rs10811661 T2D 22885922 3.70E-27 European MetaboChip chr9 22134093 single 0.327307 unknown C,T, 0.204724,0.795276, 9:22134094 1 rs10811661 FG 22885924 5.65E-18 European MetaboChip chr9 22134093 single 0.327307 unknown C,T, 0.204724,0.795276, 9:22134094 1 rs10842994 T2D 22885922 6.10E-10 European MetaboChip chr12 27965149 single 0.272854 unknown C,T, 0.855401,0.144599, 12:27965150 1 rs10938397 BMI 24094743 1.70E-07 AA MetaboChip chr4 45182526 single 0.452118 unknown A,G, 0.656777,0.343223, 4:45182527 1 rs11063069 T2D 22885922 1.10E-09 European MetaboChip chr12 4374372 single 0.255193 unknown A,G, 0.850400,0.149600, 12:4374373 1 rs11257655 T2D 24013783 2.30E-06 TaiChi MetaboChip chr10 12307893 single 0.434882 unknown C,T, 0.679756,0.320244, 10:12307894 1 rs113459440 hsCRP 22291609 1.54E-08 European MetaboChip & ImmunoChip chr21 45610580 single 0.019998 unknown C,T, 0.989899,0.010101, 21:45610581 1 rs11603334 FG 22885924 1.12E-11 European MetaboChip chr11 72432984 single 0.177202 intron,untranslated-5 A,G, 0.089337,0.910663, 11:72432985 1 rs11619319 FG 22885924 1.33E-15 European MetaboChip chr13 28487598 single 0.415758 unknown A,G,N, 0.708420,0.291163,0.000417, 13:28487599 1 rs116612809 BMI 24094743 3.60E-08 AA MetaboChip chr2 28301170 single 0.04661 intron A,G, 0.971254,0.028746, 2:28301171 1 rs1167800 FI 22885924 2.61E-09 European MetaboChip chr7 75176195 single 0.429127 intron C,N,T, 0.289129,0.000624,0.710247, 7:75176196 1 rs11715915 FG 22885924 0.000000049 European MetaboChip chr3 49455329 single 0.358658 coding-synon,ncRNA C,T, 0.735943,0.264057, 3:49455330 1 rs11782386 2hGlu 22885924 2.15E-09 European MetaboChip chr8 9201786 single 0.136131 unknown C,T, 0.934799,0.065201, 8:9201787 1 rs11829037 IL6 22291609 8.91E-10 European MetaboChip & ImmunoChip chr12 121151092 single 0.216508 coding-synon C,T, 0.894137,0.105863, 12:121151093 1 rs11829037 hsCRP 22291609 1.50E-14 European MetaboChip & ImmunoChip chr12 121151092 single 0.216508 coding-synon C,T, 0.894137,0.105863, 12:121151093 1 rs11873305 T2D 22885922 3.80E-07 European MetaboChip chr18 58049191 single 0.161521 unknown A,C, 0.886484,0.113516, 18:58049192 1 rs12571751 T2D 22885922 1.00E-10 European MetaboChip chr10 80942630 single 0.497691 intron A,G, 0.548317,0.451683, 10:80942631 1 rs1260326 Lipids 23555291 2.20E-08 AA MetaboChip chr2 27730939 single 0.473438 missense A,C,G,T, 0.003157,0.648894,0.004781,0.343168, 2:27730940 1 rs1260326 Lipids 23555291 4.40E-24 European MetaboChip chr2 27730939 single 0.473438 missense A,C,G,T, 0.003157,0.648894,0.004781,0.343168, 2:27730940 1 rs12721054 Lipids 23555291 3.57E-19 AA MetaboChip chr19 45422586 single 0.060492 untranslated-3 A,G, 0.952870,0.047130, 19:45422587 1 rs12970134 T2D 22885922 1.20E-08 European MetaboChip chr18 57884749 single 0.32132 unknown A,G, 0.204796,0.795204, 18:57884750 1 rs12970134 T2D 22885922 1.20E-08 European MetaboChip chr18 57884749 single 0.32132 unknown A,G, 0.204796,0.795204, 18:57884750 1 rs13389219 T2D 22885922 1.00E-08 European MetaboChip & ImmunoChip chr2 165528875 single 0.478466 unknown C,T, 0.595088,0.404912, 2:165528876 1 rs1421085 macronutrient intake 23636237 3.15E-07 European MetaboChip chr16 53800953 single 0.372925 intron C,T, 0.227315,0.772685, 16:53800954 1 rs1421085 FI 22885924 1.87E-15 European MetaboChip chr16 53800953 single 0.372925 intron C,T, 0.227315,0.772685, 16:53800954 1 rs1519480 BMI 24094743 7.80E-07 AA MetaboChip chr11 27675711 single 0.491971 intron C,T, 0.452500,0.547500, 11:27675712 1 rs15285 Lipids 23555291 1.08E-16 European MetaboChip chr8 19824666 single 0.441655 untranslated-3 A,G, 0.342453,0.657547, 8:19824667 1 rs1530559 FI 22885924 3.37E-08 European MetaboChip chr2 135755628 single 0.392052 intron A,G, 0.225791,0.774209, 2:135755629 NA rs1537373 coronary artery calcification 23394302 4.05x10-11 European MetaboChip chr9 22103340 NA NA NA NA NA 9:22103341 1 rs163184 T2D 22885922 8.50E-15 European MetaboChip chr11 2847068 single 0.478083 intron G,T, 0.372054,0.627946, 11:2847069 1 rs163184 T2D 22885922 1.20E-11 European MetaboChip chr11 2847068 single 0.478083 intron G,T, 0.372054,0.627946, 11:2847069 1 rs16913693 FG 22885924 3.51E-11 European MetaboChip chr9 111680358 single 0.133776 intron G,T, 0.065044,0.934956, 9:111680359 1 rs17036328 FI-adjBMI 22885924 3.59E-12 European MetaboChip chr3 12390483 single 0.191069 intron C,T, 0.113173,0.886827, 3:12390484 1 rs17141006 IL6 22291609 7.53E-13 European MetaboChip & ImmunoChip chr3 46391787 single 0.292227 unknown G,T, 0.178725,0.821275, 3:46391788 NA rs17168486 T2D 22885922 5.90E-11 European MetaboChip chr7 14898281 single 0.3706 unknown C,T, 0.753181,0.246819, 7:14898282 1 rs17168486 T2D 22885922 6.50E-13 European MetaboChip chr7 14898281 single 0.3706 unknown C,T, 0.753181,0.246819, 7:14898282 1 rs1748199 Lipids 23555291 9.87E-12 European MetaboChip chr1 63057135 single 0.464542 intron C,T, 0.401493,0.598507, 1:63057136 1 rs1748199 Lipids 23555291 2.86E-05 East Asian MetaboChip chr1 63057135 single 0.464542 intron C,T, 0.401493,0.598507, 1:63057136 1 rs17762454 FG-adj 22885924 0.000000188 European MetaboChip chr6 7213199 single 0.411174 intron C,T, 0.707571,0.292429, 6:7213200 1 rs1803924 Lipids 23555291 1.11E-11 East Asian MetaboChip chr8 19823673 single 0.174245 untranslated-3 C,G,T, 0.903167,0.000459,0.096374, 8:19823674 NA rs181686584 menopause 23424626 2.9×10-07 AA MetaboChip chr5 74725807 single 0.004581 intron C,T, 0.997704,0.002296, 5:74725808 1 rs189596789 menopause 23424626 5.7e-08 AA MetaboChip chr19 11189619 NA NA NA NA NA 19:11189620 1 rs2074314 T2D 24013783 3.50E-06 TaiChi MetaboChip chr11 17411820 single 0.394597 near-gene-5 A,G, 0.745813,0.254187, 11:17411821 1 rs2077316 SCD 23593153 3.64E-08 European MetaboChip chr10 64225447 single 0.051842 intron G,T, 0.028502,0.971498, 10:64225448 1 rs2126259 FI-adjBMI 22885924 3.30E-13 European MetaboChip chr8 9185145 single 0.188899 intron A,G, 0.102849,0.897151, 8:9185146 1 rs2237897 T2D 24013783 5.70E-12 TaiChi MetaboChip chr11 2858545 single 0.267248 intron C,T, 0.846690,0.153310, 11:2858546 1 rs2302593 FG 22885924 9.26E-10 European MetaboChip chr19 46196633 single 0.493412 intron,near-gene-5 C,G, 0.549422,0.450578, 19:46196634 NA rs231361 T2D 22885922 1.20E-09 European MetaboChip chr11 2691499 single 0.489341 intron,ncRNA C,T, 0.554375,0.445625, 11:2691500 1 rs243088 T2D 22885922 6.50E-10 European MetaboChip chr2 60568744 single 0.491971 unknown A,N,T, 0.559630,0.000616,0.439753, 2:60568745 1 rs2657879 FG-adj 22885924 0.00000569 European MetaboChip chr12 56865337 single 0.236871 missense C,T, 0.135847,0.864153, 12:56865338 1 rs2678379 Lipids 23555291 1.50E-10 European MetaboChip chr2 21226559 single 0.456014 intron A,G, 0.357645,0.642355, 2:21226560 1 rs2744475 BMI 24094743 2.80E-06 AA MetaboChip chr6 50784879 single 0.447165 near-gene-5 C,G, 0.337615,0.662385, 6:50784880 1 rs2745353 FI 22885924 5.48E-09 European MetaboChip chr6 127452934 single 0.493827 intron A,G, 0.559069,0.440931, 6:127452935 1 rs2796441 T2D 22885922 5.40E-09 European MetaboChip chr9 84308947 single 0.487088 unknown C,T, 0.598991,0.401009, 9:84308948 1 rs2820436 FI 22885924 4.36E-09 European MetaboChip chr1 219640679 single 0.449234 unknown G,T, 0.664231,0.335769, 1:219640680 1 rs2943645 FI-adjBMI 22885924 2.26E-19 European MetaboChip chr2 227099179 single 0.408051 unknown C,T, 0.291010,0.708990, 2:227099180 1 rs2954018 Lipids 23555291 1.70E-05 East Asian MetaboChip chr8 126477152 single 0.361088 unknown C,T, 0.223092,0.776908, 8:126477153 1 rs2954029 Lipids 24922540 5.10E-04 European MetaboChip chr8 126490971 single 0.493092 unknown A,T, 0.560199,0.439801, 8:126490972 1 rs2972143 FI 22885924 3.15E-08 European MetaboChip chr2 227116364 single 0.389477 unknown A,G, 0.264733,0.735267, 2:227116365 1 rs2980858 Lipids 23555291 3.12E-06 AA MetaboChip chr8 126501176 single 0.360119 unknown A,G, 0.234624,0.765376, 8:126501177 NA rs3026968 IL6 22291609 7.63E-13 European MetaboChip & ImmunoChip chr1 159147451 single 0.406071 intron C,N,T, 0.704978,0.000307,0.294714, 1:159147452 1 rs3093077 hsCRP 22291609 5.79E-21 European MetaboChip & ImmunoChip chr1 159679635 single 0.271613 unknown G,T, 0.155522,0.844478, 1:159679636 1 rs3135506 Lipids 23555291 8.36E-15 AA MetaboChip chr11 116662406 single 0.087612 missense C,G, 0.109055,0.890945, 11:116662407 1 rs3741298 Lipids 23555291 9.68E-44 European MetaboChip chr11 116657560 single 0.439119 intron A,G, 0.672410,0.327590, 11:116657561 1 rs3768445 ICCAD 23246012 8.2 × 10-08 European MetaboChip chr1 172362948 single 0.407262 intron,ncRNA A,C, 0.681785,0.318215, 1:172362949 1 rs3783347 FG 22885924 1.32E-10 European MetaboChip chr14 100839260 single 0.219266 intron G,T, 0.868873,0.131127, 14:100839261 1 rs3822072 FI-adjBMI 22885924 0.000000018 European MetaboChip chr4 89741268 single 0.495527 intron C,T, 0.445352,0.554648, 4:89741269 1 rs3829109 FG 22885924 1.13E-10 European MetaboChip chr9 139256765 single 0.322416 intron A,G, 0.198991,0.801009, 9:139256766 1 rs3845624 hsCRP 22291609 1.43E-10 European MetaboChip & ImmunoChip chr1 159218265 single 0.488798 unknown G,T, 0.611868,0.388132, 1:159218266 1 rs4148941 GLP-1–induced insulin secretion 23674605 4.90E-05 European MetaboChip chr10 73768991 single 0.474692 untranslated-3 A,C, 0.618844,0.381156, 10:73768992 1 rs4420638 Lipids 24922540 2.00E-05 European MetaboChip chr19 45422945 single 0.273472 near-gene-3 A,G, 0.850013,0.149987, 19:45422946 1 rs459193 T2D 22885922 6.00E-09 European MetaboChip chr5 55806750 single 0.471936 unknown C,T, 0.619449,0.380551, 5:55806751 1 rs459193 FI-adjBMI 22885924 1.15E-10 European MetaboChip chr5 55806750 single 0.471936 unknown C,T, 0.619449,0.380551, 5:55806751 1 rs4802349 BMI 24094743 1.20E-07 AA MetaboChip chr19 47874509 single 0.422406 intron G,T, 0.677308,0.322692, 19:47874510 1 rs4846565 FI-adjBMI 22885924 1.76E-09 European MetaboChip chr1 219722103 single 0.387307 unknown A,G, 0.239425,0.760575, 1:219722104 1 rs4865796 FI 22885924 2.09E-08 European MetaboChip chr5 53272663 single 0.358658 intron A,G, 0.775894,0.224106, 5:53272664 NA rs4865796 FI-adjBMI 22885924 2.16E-12 European MetaboChip chr5 53272663 single 0.358658 intron A,G, 0.775894,0.224106, 5:53272664 NA rs4869272 FG 22885924 1.02E-15 European MetaboChip chr5 95539447 single 0.420587 unknown C,T, 0.286673,0.713327, 5:95539448 1 rs4910472 IL6 22291609 2.31E-11 European MetaboChip & ImmunoChip chr11 9543118 single 0.456014 intron G,T, 0.353156,0.646844, 11:9543119 NA rs516946 T2D 22885922 2.50E-10 European MetaboChip chr8 41519247 single 0.31523 intron,near-gene-5 A,C,G,T, 0.198547,0.010419,0.788787,0.002247, 8:41519248 1 rs543874 BMI 24094743 2.40E-09 AA MetaboChip chr1 177889479 single 0.326767 unknown A,G,N, 0.781387,0.218405,0.000208, 1:177889480 1 rs576674 FG 22885924 2.26E-08 European MetaboChip chr13 33554301 single 0.420952 unknown A,G,N, 0.664651,0.335141,0.000209, 13:33554302 1 rs6072275 FG 22885924 1.66E-08 European MetaboChip chr20 39743904 single 0.158494 intron A,G, 0.084005,0.915995, 20:39743905 1 rs6113722 FG 22885924 2.49E-11 European MetaboChip chr20 22557098 single 0.183077 intron A,G, 0.115711,0.884288, 20:22557099 1 rs62048402 BMI 24094743 5.10E-06 AA MetaboChip chr16 53803222 single 0.372925 intron A,G, 0.248626,0.751374, 16:53803223 1 rs651821 Lipids 23555291 7.21E-68 East Asian MetaboChip chr11 116662578 single 0.267248 untranslated-5 C,T, 0.152004,0.847996, 11:116662579 1 rs6548240 BMI 24094743 1.10E-07 AA MetaboChip chr2 636928 single 0.227462 unknown A,C, 0.869264,0.130736, 2:636929 1 rs6567160 BMI 24094743 4.70E-06 AA MetaboChip chr18 57829134 single 0.334251 unknown C,T, 0.213610,0.786390, 18:57829135 1 rs657152 IL6 22291609 2.13E-29 European MetaboChip & ImmunoChip chr9 136139264 single 0.47873 unknown G,N,T, 0.605007,0.000993,0.394000, 9:136139265 1 rs6589564 Lipids 24922540 1.40E-08 European MetaboChip chr11 116624152 single 0.201092 intron C,G, 0.112241,0.887759, 11:116624153 1 rs6730157 SCD 23593153 4.93E-12 European MetaboChip chr2 135907087 single 0.352738 intron A,G, 0.230181,0.769819, 2:135907088 1 rs67566641 Lipids 23555291 7.75E-11 East Asian MetaboChip chr7 73022934 in-del 0 intron 7:73022935 NA rs676210 Lipids 23555291 3.97E-06 AA MetaboChip chr2 21231523 single 0.447463 missense A,G, 0.268683,0.731317, 2:21231524 1 rs6769511 T2D 24013783 5.00E-06 TaiChi MetaboChip chr3 185530289 single 0.48478 intron C,T, 0.467466,0.532534, 3:185530290 1 rs6822892 FI-adjBMI 22885924 2.58E-10 European MetaboChip chr4 157734674 single 0.492202 intron A,G, 0.520893,0.479107, 4:157734675 1 rs6912327 FI-adjBMI 22885924 2.26E-08 European MetaboChip chr6 34764921 single 0.485414 intron C,N,T, 0.442083,0.000208,0.557708, 6:34764922 1 rs6943153 FG 22885924 1.63E-12 European MetaboChip chr7 50791578 single 0.488521 intron C,T, 0.558618,0.441382, 7:50791579 1 rs6960043 T2D 22885922 3.40E-07 European MetaboChip chr7 15052859 single 0.476118 unknown C,T, 0.368948,0.631052, 7:15052860 1 rs6975024 2hGlu 22885924 5.25E-11 European MetaboChip chr7 44231885 single 0.269748 unknown C,T, 0.161443,0.838557, 7:44231886 1 rs7177055 T2D 22885922 4.60E-09 European MetaboChip chr15 77832761 single 0.499069 unknown A,G, 0.493765,0.506235, 15:77832762 1 rs7202633 GLP-1–induced insulin secretion 23674605 2.00E-07 European MetaboChip chr16 8538432 single 0.487672 unknown A,T, 0.571318,0.428682, 16:8538433 1 rs7202877 GLP-1–induced insulin secretion 23674605 8.80E-07 European MetaboChip chr16 75247244 single 0.244805 unknown G,T, 0.149064,0.850936, 16:75247245 1 rs7202877 T2D 22885922 3.50E-08 European MetaboChip chr16 75247244 single 0.244805 unknown G,T, 0.149064,0.850936, 16:75247245 1 rs731839 FI-adjBMI 22885924 5.13E-12 European MetaboChip chr19 33899064 single 0.483471 intron C,T, 0.409377,0.590623, 19:33899065 1 rs731839 FI 22885924 1.72E-08 European MetaboChip chr19 33899064 single 0.483471 intron C,T, 0.409377,0.590623, 19:33899065 1 rs75551077 Lipids 23555291 1.31E-09 AA MetaboChip chr8 19840407 single 0.20955 unknown C,G, 0.121451,0.878549, 8:19840408 1 rs7647305 BMI 24094743 3.20E-05 AA MetaboChip chr3 185834289 single 0.347713 unknown C,T, 0.762475,0.237525, 3:185834290 1 rs7651090 2hGlu-adjBMI 22885924 0.00000105 European MetaboChip chr3 185513391 single 0.458166 intron A,G, 0.615684,0.384316, 3:185513392 1 rs7651090 FG 22885924 1.75E-08 European MetaboChip chr3 185513391 single 0.458166 intron A,G, 0.615684,0.384316, 3:185513392 1 rs7708285 FG-adj 22885924 0.00000489 European MetaboChip chr5 76425866 single 0.316346 intron A,G, 0.827385,0.172615, 5:76425867 NA rs7808877 Lipids 23555291 2.55E-08 European MetaboChip chr7 73027449 single 0.366362 intron C,G, 0.756757,0.243243, 7:73027450 1 rs7903146 FI 22885924 6.13E-11 European MetaboChip chr10 114758348 single 0.341054 intron C,T, 0.774496,0.225504, 10:114758349 1 rs79972789 menopause 23424626 1.9×10-07 AA MetaboChip chr11 2824572 single 0.036941 intron C,G, 0.979547,0.020453, 11:2824573 1 rs814295 Lipids 23555291 1.52E-13 East Asian MetaboChip chr2 27743214 single 0.355713 intron C,T, 0.227410,0.772590, 2:27743215 1 rs838145 macronutrient intake 23636237 1.57E-09 European MetaboChip chr19 49248729 single 0.315789 intron C,T, 0.183937,0.816063, 19:49248730 1 rs9349379 coronary artery calcification 23394302 4.67x10-11 European MetaboChip chr6 12903956 single 0.482796 intron A,G, 0.609639,0.390361, 6:12903957 1 rs9368222 FG 22885924 0.000000001 European MetaboChip chr6 20686995 single 0.401642 intron A,C, 0.282395,0.717605, 6:20686996 1 rs944801 T2D 22885922 2.40E-09 European MetaboChip chr9 22051669 single 0.328385 intron C,G, 0.838690,0.161310, 9:22051670 1 rs974801 FI-adjBMI 22885924 3.27E-11 European MetaboChip chr4 106071063 single 0.488242 intron C,T, 0.409309,0.590691, 4:106071064 1 rs983309 FG 22885924 6.29E-15 European MetaboChip chr8 9177731 single 0.240853 unknown A,C, 0.145417,0.854583, 8:9177732 1 rs983309 FI 22885924 3.81E-14 European MetaboChip chr8 9177731 single 0.240853 unknown A,C, 0.145417,0.854583, 8:9177732 1 rs9884482 FI 22885924 1.40E-11 European MetaboChip chr4 106081635 single 0.474692 intron C,T, 0.392285,0.607715, 4:106081636 1