RESULTS OF MICROSATELLITE SEARCH ================================ Total number of sequences examined: 76790 Total size of examined sequences (bp): 24462600 Total number of identified SSRs: 7340 Number of SSR containing sequences: 6351 Number of sequences containing more than 1 SSR: 827 Number of SSRs present in compound formation: 816 Distribution to different repeat type classes --------------------------------------------- Unit size Number of SSRs 2 4282 3 2004 4 693 5 185 6 176 Frequency of identified SSR motifs ---------------------------------- Repeats 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 total AC - - 34 14 14 14 5 7 3 5 2 6 2 3 7 1 1 4 4 1 1 1 1 130 AG - - 102 107 78 57 83 46 58 52 53 44 40 32 19 17 9 6 4 2 1 1 1 812 AT - - 112 84 90 83 75 42 15 6 2 3 1 1 1 1 1 1 1 1 520 CA - - 8 6 17 8 6 4 4 2 5 2 1 1 1 65 CG - - 3 3 CT - - 126 111 78 68 57 60 58 40 23 11 11 4 4 6 1 1 659 GA - - 81 48 60 40 49 32 33 32 34 19 16 17 4 3 5 3 1 477 GC - - 2 2 GT - - 13 8 7 10 10 5 6 10 2 4 1 1 3 1 1 82 TA - - 101 95 83 108 56 35 22 15 19 14 10 10 5 7 7 2 3 1 4 1 1 1 1 1 1 3 2 2 2 1 1 1 1 616 TC - - 172 133 110 78 79 57 44 32 16 4 5 2 1 1 1 735 TG - - 35 20 19 14 18 22 9 10 5 7 6 5 2 2 1 1 1 1 1 1 1 181 AAC - 13 8 2 3 2 1 29 AAG - 50 14 8 4 1 77 AAT - 52 45 20 9 5 131 ACA - 12 2 2 2 18 ACC - 12 9 5 2 1 29 ACG - 1 1 2 4 ACT - 2 1 3 1 2 1 10 AGA - 45 32 9 4 6 96 AGC - 4 1 3 8 AGG - 4 6 1 1 12 AGT - 2 5 1 8 ATA - 16 6 4 4 1 31 ATC - 32 8 6 3 1 50 ATG - 10 6 2 1 1 1 21 ATT - 31 17 10 1 3 62 CAA - 12 6 4 3 1 26 CAC - 16 6 5 1 3 31 CAG - 10 4 1 1 16 CAT - 24 11 6 1 42 CCA - 13 9 1 5 28 CCT - 11 1 1 13 CGA - 2 4 1 7 CGC - 1 2 1 4 CGG - 2 2 CGT - 3 3 6 CTA - 3 1 1 1 6 CTC - 4 2 1 7 CTG - 9 1 4 2 1 17 CTT - 60 25 15 10 7 4 9 1 131 GAA - 71 25 17 8 8 129 GAC - 3 1 4 GAG - 10 1 3 1 1 1 17 GAT - 19 8 3 2 1 33 GCA - 5 2 1 2 10 GCC - 1 1 GCG - 3 3 GCT - 6 6 4 16 GGA - 8 9 3 1 21 GGC - 3 3 GGT - 16 2 4 6 5 33 GTA - 1 3 1 5 GTC - 6 2 8 GTG - 3 11 2 16 GTT - 7 7 3 3 20 TAA - 16 9 3 7 1 1 1 38 TAC - 11 10 1 3 3 5 1 4 3 2 1 2 2 1 1 1 1 2 54 TAG - 3 2 2 1 1 9 TAT - 29 11 8 2 3 53 TCA - 38 7 4 49 TCC - 13 4 3 20 TCG - 3 3 2 8 TCT - 56 29 19 18 13 3 6 5 1 1 151 TGA - 9 8 6 3 2 28 TGC - 16 7 4 1 2 30 TGG - 12 8 7 1 28 TGT - 6 4 2 1 1 14 TTA - 53 33 21 9 6 1 123 TTC - 53 35 16 10 6 4 1 2 2 129 TTG - 16 6 3 3 1 29 AAAC 3 3 4 10 AAAG 4 1 5 AAAT 86 31 4 3 124 AACA 1 1 AAGA 7 7 AAGC 1 1 AATA 22 4 2 28 AATC 1 4 5 AATT 1 1 ACAA 7 7 ACAT 1 1 ACCA 1 1 ACCT 1 1 ACGA 1 3 1 2 7 ACGT 1 1 ACTA 1 1 2 2 4 1 1 12 AGAA 4 4 AGAC 1 1 AGAT 1 1 AGTA 1 1 ATAA 6 2 8 ATAC 2 1 3 ATCA 1 1 ATCC 1 1 ATCT 2 2 ATGC 1 1 ATTA 3 3 ATTT 35 7 3 45 CAAA 4 1 5 CACG 1 1 CAGA 1 1 CATA 1 2 3 CATG 1 1 CCAT 1 3 4 CCTC 1 1 CCTT 1 1 CGGT 1 1 CGTA 1 1 CGTT 1 1 CTAC 1 1 CTCC 1 1 CTTA 1 1 CTTC 1 1 CTTT 3 3 GAAA 6 6 GAAC 1 1 GATA 1 1 GCGT 2 2 GCTA 4 4 GGTA 1 1 GGTG 1 1 GTAC 2 1 3 GTCT 2 2 GTGA 1 1 GTGC 3 3 GTTC 1 1 GTTT 1 3 4 TAAA 11 4 15 TAAC 1 1 1 3 TAAT 2 1 3 TACA 2 1 3 TACG 1 1 1 1 4 TACT 1 1 2 TAGA 2 2 TAGT 1 1 TATC 1 1 TATG 1 1 2 TATT 12 3 3 18 TCGC 3 3 TCTA 1 3 4 TCTG 1 1 TCTT 6 1 1 8 TGAT 1 1 TGCA 6 6 TGCT 1 1 TGGT 1 1 TGTA 1 1 2 TGTT 3 3 TTAA 5 5 TTAC 1 2 3 TTAT 30 19 1 50 TTCT 4 4 TTGG 3 3 TTGT 3 1 4 TTTA 100 35 14 9 3 2 1 164 TTTC 20 7 1 28 TTTG 5 2 1 8 AAAAC 1 2 3 AAAAG 6 6 AAAAT 23 1 1 25 AAATA 5 1 6 AAATC 1 1 AACAC 1 1 AACCG 1 1 AACGG 1 1 AACTA 1 1 2 AAGAA 2 2 AATAA 2 1 3 AATTT 1 1 ACCAT 1 1 ACGTA 1 1 AGTTT 1 1 ATAAA 3 3 ATAGA 1 1 ATGAT 2 2 ATTTT 9 9 CAAAA 3 1 4 CGTAA 1 1 CTCCA 1 1 CTTTT 3 3 GAAAA 1 1 GAGAA 2 2 GAGAG 2 2 GGATG 3 3 GGGTT 1 1 GTGGA 1 1 GTTAC 1 1 2 TAAAA 1 1 TACGT 1 1 TACTC 1 1 TATCA 1 1 TATTT 2 2 4 TCCAA 3 3 TCCTC 1 1 TCGGT 1 1 TCTCT 1 1 TCTTT 1 1 TTATA 1 1 TTATT 1 1 TTCTT 2 1 3 TTTAC 1 1 TTTAT 2 2 TTTCC 1 1 TTTTA 35 15 6 2 58 TTTTC 5 1 2 8 TTTTG 1 3 4 AAAAAC 2 2 AAAAAT 2 2 AAAACA 2 2 AAAATA 2 2 AAAATT 2 1 3 AAACCC 1 1 AAATAA 1 1 AAATTT 1 1 AACACA 1 1 AACCGT 1 1 AAGCGA 1 1 AATAAA 3 3 ACAGAG 1 1 ACCAAC 1 1 ACCCAA 2 2 ACCCAC 3 3 ACCGTA 1 1 ACCTCC 2 2 ACTGGT 1 1 AGAAGG 1 1 AGACAA 1 1 AGACGA 1 1 AGGGGT 1 1 ATAAAA 2 2 ATTTTT 3 1 4 CAATCT 2 2 CAATGC 1 1 CACACG 1 1 CATGGT 1 1 CCAAAG 3 3 CCACCT 1 1 CCCATC 1 1 CCGGCT 1 1 CCTTCT 2 2 CCTTTT 1 1 CGAGGA 1 1 CGGCAT 2 2 CGTAAC 1 1 CGTTAC 1 1 CTATCT 1 1 CTCCTG 1 1 CTCTGT 1 1 CTCTTT 1 1 CTTCCA 1 1 GAAGAT 1 1 GACAGA 1 1 GACGGC 1 1 GAGCAA 1 1 GAGCAG 2 2 GAGGAA 4 1 5 GATGGT 2 2 GCATCT 3 3 GGAATA 3 3 GGCAAG 2 2 GGCACC 1 1 GGCATT 1 1 GGCTCA 3 1 4 GGGAAT 1 1 GGGAGA 2 2 GGTGGA 3 3 GTCATG 1 1 GTGGAA 1 1 GTGGGT 2 2 GTTAAC 1 1 GTTACG 1 1 2 GTTTTT 1 2 3 TAAAAA 1 1 TATTTT 1 1 TCAAGC 3 3 TCATCT 1 1 TCCTCT 2 2 TCGCCG 1 1 TCGCTT 2 2 TCGTCA 1 1 TCTCCA 1 1 TCTCTG 3 3 TCTGTA 1 1 TCTTCC 2 2 TGAAGA 2 2 TGATGC 1 1 TGGAAG 1 2 3 TGGCTT 2 2 TGTTGG 2 2 TTCTTT 2 2 TTGGCT 1 1 TTGTAA 1 1 TTTATT 2 1 3 TTTCTT 1 1 TTTTAC 1 1 TTTTAG 1 1 TTTTCG 1 1 TTTTCT 2 1 1 4 TTTTTA 12 4 1 17 TTTTTC 1 1 2 TTTTTG 4 1 5 Frequency of classified repeat types (considering sequence complementary) ------------------------------------------------------------------------- Repeats 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 total AC/GT - - 90 48 57 46 39 38 22 27 14 17 11 9 13 4 1 6 5 1 2 1 2 1 1 1 1 1 458 AG/CT - - 481 399 326 243 268 195 193 156 126 78 72 53 27 28 15 10 7 2 1 1 1 1 2683 AT/AT - - 213 179 173 191 131 77 37 21 21 17 11 11 5 7 8 2 4 1 5 2 1 1 1 1 1 3 2 2 2 1 1 1 1 1 1 1136 CG/CG - - 5 5 AAC/GTT - 66 33 16 12 4 4 1 136 AAG/CTT - 335 160 84 54 41 11 16 5 4 1 2 713 AAT/ATT - 197 121 66 32 17 2 1 1 1 438 ACC/GGT - 72 45 24 13 7 4 165 ACG/CGT - 15 13 7 2 37 ACT/AGT - 22 21 7 4 3 8 3 4 3 3 1 2 3 1 1 1 1 1 2 1 92 AGC/CTG - 50 21 17 2 4 3 97 AGG/CCT - 50 23 9 4 2 1 1 90 ATC/ATG - 132 48 27 9 2 3 1 1 223 CCG/CGG - 8 4 1 13 AAAC/GTTT 26 9 7 42 AAAG/CTTT 54 8 1 1 1 65 AAAT/ATTT 302 105 27 12 3 2 1 452 AACC/GGTT 5 5 AACG/CGTT 4 3 1 2 10 AACT/AGTT 3 2 2 2 4 1 1 1 16 AAGC/CTTG 2 2 AAGG/CCTT 2 2 AAGT/ACTT 2 3 2 7 AATC/ATTG 2 5 7 AATT/AATT 10 2 12 ACAG/CTGT 3 2 5 ACAT/ATGT 6 1 4 3 14 ACCC/GGGT 1 1 ACCG/CGGT 1 1 ACCT/AGGT 3 3 ACGC/CGTG 6 6 ACGT/ACGT 4 2 1 1 1 9 ACTC/AGTG 1 1 AGAT/ATCT 5 5 1 11 AGCG/CGCT 3 3 AGCT/AGCT 4 4 AGGG/CCCT 1 1 2 ATCC/ATGG 2 3 5 ATGC/ATGC 8 8 AAAAC/GTTTT 4 4 3 11 AAAAG/CTTTT 19 1 1 3 24 AAAAT/ATTTT 83 20 7 2 112 AAACT/AGTTT 2 1 3 AAAGG/CCTTT 1 1 AAAGT/ACTTT 1 1 AAATC/ATTTG 1 1 AAATT/AATTT 1 1 AACAC/GTGTT 1 1 AACCC/GGGTT 1 1 AACCG/CGGTT 2 2 AACGG/CCGTT 1 1 AACGT/ACGTT 1 1 1 1 1 5 AAGAG/CTCTT 2 1 3 AATAG/ATTCT 1 1 AATAT/ATATT 1 1 AATCC/ATTGG 3 3 ACCAT/ATGGT 1 1 ACTCC/AGTGG 2 2 ACTCT/AGAGT 1 1 AGAGG/CCTCT 3 3 ATATC/ATATG 3 3 ATCCC/ATGGG 3 3 AAAAAC/GTTTTT 7 3 2 12 AAAAAG/CTTTTT 6 1 1 1 9 AAAAAT/ATTTTT 29 6 1 36 AAAACG/CGTTTT 1 1 AAAACT/AGTTTT 1 1 AAAAGG/CCTTTT 1 1 AAAAGT/ACTTTT 1 1 AAAATT/AATTTT 2 1 3 AAACAC/GTGTTT 1 1 AAACCC/GGGTTT 1 2 3 AAAGAC/CTTTGT 1 1 AAAGAG/CTCTTT 1 1 AAAGCC/CTTTGG 3 3 6 AAAGCG/CGCTTT 3 3 AAATTT/AAATTT 1 1 AACACC/GGTGTT 3 3 AACCGT/ACGGTT 1 1 1 1 1 5 AACGGT/ACCGTT 1 1 AACGTT/AACGTT 1 1 AAGACG/CGTCTT 1 1 AAGAGC/CTCTTG 1 1 AAGAGG/CCTCTT 6 1 2 9 AAGATG/ATCTTC 3 1 4 AAGCTC/AGCTTG 3 3 AAGGAG/CCTTCT 2 1 3 AAGGGC/CCCTTG 2 2 AAGTGG/ACTTCC 1 2 2 5 AATAGG/ATTCCT 3 3 AATCTC/AGATTG 2 2 AATGCC/ATTGGC 2 2 AATGGG/ATTCCC 1 1 AATTAC/AATTGT 1 1 ACACCC/GGGTGT 5 5 ACACGC/CGTGTG 1 1 ACAGAG/CTCTGT 6 6 ACAGAT/ATCTGT 1 1 ACCAGT/ACTGGT 1 1 ACCATC/ATGGTG 2 2 ACCATG/ATGGTC 1 1 2 ACCCCT/AGGGGT 1 1 ACCGGC/CCGGTG 1 1 ACCTCC/AGGTGG 6 6 ACGAGG/CCTCGT 1 1 ACGATG/ATCGTC 1 1 ACGGCG/CCGTCG 2 2 AGAGAT/ATCTCT 1 1 AGAGGG/CCCTCT 2 2 AGATGC/ATCTGC 3 3 AGATGG/ATCTCC 1 1 AGCAGG/CCTGCT 1 2 3 AGCATC/ATGCTG 1 1 AGCCGG/CCGGCT 1 1 AGCCTG/AGGCTC 3 1 4 ATCCCC/ATGGGG 1 1 ATCGGC/ATGCCG 2 2