A New Morphological Type of Volvox from Japanese Large Lakes and Recent Divergence of this Type and V. ferrisii in Two Different Freshwater Habitats

Volvox sect. Volvox is characterized by having unique morphological characteristics, such as thick cytoplasmic bridges between adult somatic cells in the spheroids and spiny zygote walls. Species of this section are found from various freshwater habitats. Recently, three species of Volvox sect. Volvox originating from rice paddies and a marsh were studied taxonomically based on molecular and morphological data of cultured materials. However, taxonomic studies have not been performed on cultured materials of this section originating from large lake water bodies. We studied a new morphological type of Volvox sect. Volvox (“Volvox sp. Sagami”), using cultured materials originating from two large lakes and a pond in Japan. Volvox sp. Sagami produced monoecious sexual spheroids and may represent a new morphological species; it could be clearly distinguished from all previously described monoecious species of Volvox sect. Volvox by its small number of eggs or zygotes (5–25) in sexual spheroids, with short acute spines (up to 3 μm long) on the zygote walls and elongated anterior somatic cells in asexual spheroids. Based on sequences of internal transcribed spacer (ITS) regions of nuclear ribosomal DNA (rDNA; ITS-1, 5.8S rDNA and ITS-2) and plastid genes, however, the Volvox sp. Sagami lineage and its sister lineage (the monoecious species V. ferrisii) showed very small genetic differences, which correspond to the variation within a single biological species in other volvocalean algae. Since V. ferrisii was different from Volvox sp. Sagami, by having approximately 100–200 zygotes in the sexual spheroids and long spines (6–8.5 μm long) on the zygote walls, as well as growing in Japanese rice paddies, these two morphologically distinct lineages might have diverged rapidly in the two different freshwater habitats. In addition, the swimming velocity during phototaxis of Volvox sp. Sagami spheroids originating from large lakes was significantly higher than that of V. ferrisii originating from rice paddies, suggesting adaptation of Volvox sp. Sagami to large water bodies.


Introduction
Volvox represents the most advanced member of volvocine green algae [1]. This genus was originally described by Linnaeus [2]. Smith [3] classified the genus Volvox into four sections (subdivisions of genus or taxa between genus and species) based on the differences in morphology of gelatinous matrix and cytoplasmic bridges between adult cells in spheroids. Recently, a new taxonomic system at section level was proposed to subdivide the genus into four monophyletic sections [4], in which taxonomic status of Volvox sect. Volvox (= Euvolvox sensu Smith [3]) has been unchanged [3,4]. This section has unique morphological characteristics, such as thick cytoplasmic bridges between adult somatic cells and spiny zygote walls [3,4]. Volvox sect. Volvox species constitute a clade that is separated from other sections of the genus Volvox [4][5][6].
Eight species have been recognized in the Volvox sect. Volvox, based on morphological characteristics of field-collected material [3,7,8]. Recently, based on morphological and molecular data of cultured materials of this section, two new species (V. ferrisii and V. kirkiorum) were found in Japanese rice paddies [8], and V. capensis was reported to originate from a marsh in Montana, USA [9]. However, species of Volvox sect. Volvox occurring as phytoplanktons in large lakes have not been studied, based on morphological and molecular data of cultured material.
The present study was undertaken to examine a new morphological type of Volvox sect. Volvox ["Volvox sp. Sagami"] occurring as phytoplanktons in large lakes and in a pond in Japan, based on combined analyses of molecular and morphological data from cultured material. Although Volvox sp. Sagami is closely related to V. ferrisii on the basis of molecular phylogenetic analyses, differences in morphological characteristics and habitats suggest rapid diversification of these two lineages in two different Japanese freshwater habitats.

Ethics statement
We collected Volvox sp. Sagami from two large lakes and a pond. Collection locations and details are shown in S1 Table. Collection of volvocalean algae in Lake Sagami and Lake Tsukui was permitted by the Tanigahara Water Purification Plant of Kanagawa Prefecture Companies Authority, the Kanagawa Prefectural Government, Japan. Collection of Volvox species was permitted in the Miyaike Pond by the Fumon Residents Association, Otsu, Shiga, Japan.

Establishment of cultures and light microscopic observations
Water samples were collected from two large lakes and a pond (S1 Fig; S1 Table). Clonal cultures of Volvox sp. Sagami were established from the water samples in Petri dishes (90 × 20 mm), using the pipette-washing method [10]. The cultures were maintained in screw-cap tubes (18 × 150 mm) containing 11 mL artificial freshwater-6 (AF-6) [11] or AF-6/3 medium (AF-6 medium diluted with two volumes of distilled water [9]) at 20˚C, 23˚C, or 25˚C on a 14 h light:10 h dark schedule under cool-white fluorescent lamps at an intensity of 80-130 μmolÁm −2 Ás −1 . The new wild strains of Volvox sp. Sagami (S1 Table) are available from Microbial Culture Collection at the Institute for National Environmental Studies [11] (http://mcc.nies.go.jp/localeAction.do; jsessionid=902B594FE29F71E317167414B91E6152?lang=en) as NIES-4021~4028 (S1 Table). To observe the morphology of asexual spheroids, the cultures were grown in Volvox thiamin acetate (VTAC) medium, containing 200 mg L −1 sodium acetate 4H 2 O [9,11,12], or VTAC/3 (VTAC medium diluted with two volumes of distilled water) at 25˚C on 14:10 LD. A small aliquot of asexual spheroids, in actively grown 2-to 5-day-old cultures in tubes or Petri dishes (55 × 15 mm), was examined. Sexual spheroids developed spontaneously in a culture that was several days old, with VTAC/3 medium at 25˚C on 14:10 LD, except for Volvox sp. Sagami strain 15-Sagami12-2, which did not produce sexual spheroids under those culture conditions. To enhance the production of sexual spheroids, urea soil Volvox thiamin/3 (USVT/3) medium [USVT medium (VTAC medium supplemented with 40 mg L −1 urea and 40 mL L −1 soil extract medium [9]) diluted with two volumes of distilled water] was also used. For maturation of sexual spheroids and the fertilized eggs or zygotes, 0.5-1.0 mL actively growing culture with sexual spheroids was inoculated into 11 mL USVT/3 medium.
Light microscopy was performed on a BX60 microscope (Olympus, Tokyo, Japan) equipped with Nomarski optics. The cells in spheroids were counted as described previously [3,13]. Individual cellular sheaths of the gelatinous matrix of the spheroids were examined after mixing approximately 10 μL cultured material with 2-5 μL 0.002% (w/v in distilled water) methylene blue (1B-429 WALDECK GmbH & Co Division Chroma, Münster, Germany).

Molecular experiments
To determine the phylogenetic position of the alga, we used the large subunit of Rubisco (rbcL), plus the photosystem II CP43 apoprotein (psbC) genes, and the internal transcribed spacer (ITS) regions of nuclear ribosomal DNA (rDNA; ITS-1, 5.8S rDNA, and ITS-2) from the operational taxonomic units (OTUs) or species/lineages listed in S1 Table. The two data sets (rbcL-psbC genes and ITS rDNA) were aligned as described previously [8,9]. The alignments are available from TreeBASE: http://www.treebase.org/treebase-web/home.html; study ID: 20048). Designation of the outgroup or root was performed based on previous phylogenetic results [8,9]. Maximum-likelihood (ML) analyses, based on the selected models (GTR +G and K2+G models for rbcL-psbC genes and ITS rDNA, respectively) with 1000 replicates of bootstrap analyses [14], were performed using MEGA 5.2.2 [15]. In addition, 1000 replicates of bootstrap analyses were performed by the maximum-parsimony (MP) method, based on a branch-and-bound search by PAUP 4.0b10 [16]. The secondary structures of ITS-2 were predicted as described previously [4,9]. Nucleotide sequences of a potential group I intron inserted in the Volvox sp. Sagami psbC gene were determined by direct sequencing of PCR products, amplified by four new primers (S2 Table). The secondary structure map of group I introns was constructed as previously described [17].

Swimming velocity during phototaxis
To measure swimming velocity during phototaxis, four strains of Volvox ferrisii were obtained from the Microbial Culture Collection at the Institute for National Environmental Studies for comparison with five Volvox sp. Sagami strains (S3 Table). They were cultured in screw-cap tubes containing 11 mL AF-6 or AF-6/3 media at 25˚C, as described above.
Actively growing cultured materials 8 to 9 days old were used in the experiments. Approximately 1 mL cultured materials were placed in 24-wells plates (Becton, Dickinson and Company, NJ, USA), and observed under an SMZ1000 stereomicroscope (Nikon, Tokyo, Japan). Spheroids were illuminated with a green light-emitting diode (LED) (λ = 525 nm, <100 μmol photonsÁm −2 Ás −1 ) [18] from one side, observed under red light and video-recorded with an EOS Kiss X7 digital camera (Canon, Tokyo, Japan). Swimming velocities of 20 spheroids for each culture were obtained from the tracks for 3 s, following illumination with a green LED for 22 s using Image Hyper software (Science Eye, Saitama, Japan), and averaged. Approximate diameters in each culture were measured based on 32-45 randomly selected asexual spheroids, using ImageJ 1.48v software (National Institutes of Health, Bethesda, MD, USA).

Morphology of asexual and sexual spheroids
Asexual spheroids of all Volvox sp. Sagami strains were spherical to pear-shaped, measured up to 590 μm long, and contained 2,000-10,000 (usually 2,500-5,000) biflagellate somatic cells and 4-8 gonidia distributed in the posterior two-thirds portion (Fig 1A). Somatic cells in the anterior pole of the spheroid were elongate-ellipsoidal or spindle-shaped in a side view, measuring up to 16 μm long (Fig 1B). Somatic cells have a cup-shaped chloroplast, with a single pyrenoid and a stigma (Fig 1B). The cells were connected via thick cytoplasmic bridges and enclosed by individual sheaths (Fig 1C and 1D). Gonidia were evident in juvenile spheroids or even during the late inversion stage of daughter spheroid formation (Fig 1E).
Although Volvox sp. Sagami strain 15-Sagami12-2 did not produce sexual spheroids under the present culture conditions, sexual spheroids in all other strains of Volvox sp. Sagami exhibited essentially the same morphological characteristics falling within the ranges described below. Sexual spheroids were spherical, pear-shaped, or ellipsoidal with 4,000-8,000 cells and monoecious with 5-25 (usually 10-20) eggs and 1-5 sperm packets, and up to 500 μm long (Fig 1F). Sperm packets were compressed globoids composed of biflagellate male gametes ( Fig  1G). Mature zygotes had a thick cell wall with spines, measuring 37-48 μm in diameter (without spines; Fig 1H and 1I). Spines of zygote walls were almost straight, with an acute tip, and measured up to 3 μm (Fig 1H).

Molecular phylogeny
Phylogenetic relationships within Volvox sect. Volvox, resolved by the ITS rDNA and chloroplast rbcL-psbC gene trees (Figs 2 and 3) were essentially the same as those of a previous study [9], except for the phylogenetic position of Volvox sp. Sagami, which is a sister to V. ferrisii. These two species exhibited only a single nucleotide difference in ITS rDNA (S2 Fig), and a single difference in 780 base pairs of psbC coding regions but no differences in the 1128 base pairs of the rbcL genes.

Group I intron inserted in the psbC gene
All Volvox sp. Sagami strains examined (S1 Table) contained an insertion of a possible group IA intron in the psbC gene after the position corresponding to the 672nd nucleotide of the  Table). Bootstrap values from ML (left) and maximum parsimony (right) analyses are shown on the branches. The nucleotide sequence in P7.1 (positions 1739-1832) of the Volvox sp. Sagami group IA intron showed a single homologous nucleotide sequence (a possible group I intron inserted in the Gonium multicoccum psbC gene, accession number AB044481) within the Volvocales, based on a discontiguous megablast search (E-value = 3e−12) of the whole intron sequences against the NCBI database.
Introns or insertions are lacking in the 780 base pairs determined in the psbC genes of all other Volvox sect. Volvox species/strains [8,9] (S1 Table).  Table). Bootstrap values from ML (left) and maximum parsimony (right) analyses are shown on the branches.

Swimming velocity
The swimming velocities during phototaxis of Volvox sp. Sagami strains originating from two large lakes (Lake Sagami and Lake Tsukui) were significantly higher than those of the V. ferrisii strains originating from rice paddies (Fig 4; S4 Table). Two strains of the two species originating from ponds represented an intermediate swimming velocity (Fig 4). There were not large differences in the approximate sizes of spheroids between Volvox sp. Sagami from large lakes  Table).

Discussion
Volvox sp. Sagami could be clearly identified as the Volvox sect. Volvox, in having thick cytoplasmic bridges between adult cells and spiny zygote walls [4,9]. Among the monoecious species of this section, Volvox sp. Sagami was similar to V. globator in having less than 80 eggs or zygotes in a monoecious spheroid (S6 Table). However, V. globator had flattened anterior somatic cells and blunt zygote wall spines, measuring 3-8 μm long [8], whereas Volvox sp. Sagami anterior somatic cells were elongate-ellipsoidal or spindle-shaped, and zygote wall spines were acute and up to 3 μm long (S6 Table).
Although V. kirkiorum produces monoecious spheroids with a relatively small number (20-80) of eggs or zygotes [8], Volvox sp. Sagami differed from V. kirkiorum according to its short zygote spines and elongated anterior somatic cells (S6 Table). V. kirkiorum produces spines 5.5-8 μm long and has pear-shaped to ovoid anterior cells [8]. Thus, Volvox sp. Sagami may represent an undescribed morphological species. However, Volvox sp. Sagami and V. ferrisii are closely related (Figs 2 and 3), and these two sister lineages showed only a single nucleotide difference in ITS rDNA and no compensatory base changes (CBC) in ITS-1 and ITS-2 rRNA secondary structures (S2 Fig). Thus, these two lineages might be identified as a single species when accepting the species concept based on genetic differences and/or CBC [20]. However, differences in morphological characteristics and habitats were significant. Volvox sp. Sagami grows in large lakes and has a small number of eggs (usually [10][11][12][13][14][15][16][17][18][19][20], and short spines on the zygote walls. In contrast, V. ferrisii is found in rice paddies and produces usually 100-200 zygotes in a monoecious spheroid [8]. In rice paddies, the water is flooded during spring to summer and the water depth is less than 15 cm [21]. The water depth is more than 20 m in Lake Sagami and Lake Tsukui [22]. Therefore, these two Japanese lineages might have diverged rapidly in the two different habitats in Japan. A similar rapid divergence of multiple species was recently reported in dinoflagellates, which are restricted to a few lakes in Russia and Sweden [23]. All of the strains of Volvox sp. Sagami showed a group IA intron inserted in the psbC genes. However, introns or insertions are completely lacking in the 780 base pairs determined in the psbC genes of all other Volvox sect. Volvox species/lineages [8,9] (S1 Table). The group IA intron of Volvox sp. Sagami psbC gene had only a single homologous nucleotide sequence (possible group I intron inserted in the Gonium multicoccum psbC gene) within the Volvocales. Thus, the intron should have been transmitted to the common ancestor of all Volvox sp. Sagami strains after the divergence of Volvox sp. Sagami and V. ferrisii, suggesting the single origin of the Volvox sp. Sagami lineage.
The swimming velocity of Volvox sp. Sagami spheroids originating from large lakes was significantly higher than that of V. ferrisii from paddy fields during phototaxis (Fig 4; S4 Table). Larger spheroids of Volvox generally have greater swimming velocities [24]. However, the difference in the swimming velocity in the present study (Fig 4) could not be accounted for by differences in spheroid size between the two habitats, because spheroids in cultures examined for velocity were not significantly different in size among the three habitats (S4 Fig; S5 Table). Thus, we suggest that Volvox sp. Sagami has adapted to large water bodies by having high swimming velocities during phototaxis.
Spheroids of Volvox sp. Sagami and V. ferrisii strains originating from ponds exhibited intermediate swimming velocities compared to those from large lakes and rice paddies (Fig 4;  S4 Table). Considering that the genetic difference in the nuclear ITS rDNA region and chloroplast psbC genes was apparent between Volvox sp. Sagami and V. ferrisii lineages and all Volvox sp. Sagami strains have a common psbC group IA intron, these two lineages might have at first diverged and adapted to the two markedly different freshwater environments (i.e., large lakes and rice paddies). Then, each lineage might have invaded from a large lake or rice paddy to a pond. Thus, Volvox sp. Sagami and V. ferrisii strains originating from ponds could have secondarily adapted to the new environment. Alternatively, it could be considered that ancestors of Volvox sp. Sagami and V. ferrisii might have grown at first in ponds, and then might have invaded to large lakes and rice paddies. Irrespective of these two alternative hypotheses, swimming velocities of spheroids might have evolved more rapidly than morphological characteristics during the diversification of Volvox sp. Sagami and V. ferrisii.

Conclusion
Based on the morphological comparison, Volvox sp. Sagami apparently represents a new monoecious species of Volvox sect. Volvox (S6 Table). In addition, Volvox sp. Sagami showed genetic differences from its sister (V. ferrisii) in ITS nuclear rDNA and chloroplast psbC, as well as presence of the common insertion of the psbC group IA intron in all strains of Volvox sp. Sagami. Thus, Volvox sp. Sagami represents a lineage that is morphologically and genetically distinct from V. ferrisii. However, genetic differences between Volvox sp. Sagami and V. ferrisii were small (Figs 2 and 3), falling within a single biological species in other volvocalean algae [20]. Thus, these two lineages may represent a single species that has extensive morphological and ecological diversity, or they may be very closely related different species. Therefore, we did not provide formal description of a new taxon for Volvox sp. Sagami. Intercrossing experiments would determine one of these two possibilities. However, such experiments are not practically possible because the two lineages produced monoecious sexual spheroids with sperm packets and eggs. In any case, rapid diversification in morphological and physiological characteristics is apparent in Volvox sp. Sagami and V. ferrisii based on the present study. Original photographs and drawings. A. Lake Sagami (S1 and S3 Tables). B. Lake Tsukui (S1 and S3 Tables). C. Miyaike pond (S1 and S3 Tables).  Fig 4). Two media (AF-6/3 and AF-6) were used for each strain. For statistical tests, see S5 Table. (DOCX) S1 Table. List of volvocacean species/lineages and strains used in the present phylogenetic analyses (Figs 2 and 3).