Proteomic Analysis of Salt-Responsive Proteins in the Leaves of Mangrove Kandelia candel during Short-Term Stress

Salt stress is a major abiotic stress that limits crop productivity in many regions of the world. A comparative proteomic approach to identify salt stress-responsive proteins and to understand the molecular mechanisms was carried out in the woody halophyte Kandelia candel. Four-leaf-old K. candel seedlings were exposed to 150 (control), 300, 450, and 600 mM NaCl for 3 days. Proteins extracted from the leaves of K. candel seedlings were separated by two-dimensional gel electrophoresis (2-DE). More than 900 protein spots were detected on each gel, and 53 differentially expressed protein spots were located with at least two-fold differences in abundance on 2-DE maps, of which 48 were identified by matrix-assisted laser desorption ionization time-of-flight/time-of-flight mass spectrometry (MALDI-TOF-TOF/MS). The results showed that K. candel could withstand up to 450 mM NaCl stress by up-regulating proteins that are mainly involved in photosynthesis, respiration and energy metabolism, Na+ compartmentalization, protein folding and assembly, and signal transduction. Physiological data, including superoxide dismutase (SOD) and dehydroascorbate reductase (DHAR) activities, hydrogen peroxide (H2O2) and superoxide anion radicals (O2 −) contents, as well as Na+ content and K+/Na+ ratios all correlated well with our proteomic results. This study provides new global insights into woody halophyte salt stress responses. Identification of differentially expressed proteins promotes better understanding of the molecular basis for salt stress reduction in K. candel.


Introduction
Salinity is one of the major abiotic stresses that pose a severe threat to agricultural productivity in many global regions [1]. Salinity can cause a variety of changes in the metabolism of higher plants, such as photosynthetic and respiratory repression, osmotic stress, ion toxicity, oxidative stress, and nutrient deficiencies, leading to a decrease in the growth and productivity of plants [2][3][4][5][6][7][8][9].
Mangroves, which are intertidal plants that form unique communities along tropical and subtropical coastal areas, constitute a model for salt-tolerant xylophytes [10,11]. Several mangrove tree species display optimal growth in the presence of moderate salt stress conditions, whereas severe salinity restricts their growth [12]. The most striking feature of mangroves is their ability to tolerate salt up to seawater concentrations (,500 mM NaCl); this has attracted the attention of many scientists interested in elucidating this phenomenon [13,14]. Previous studies indicated that mangroves have evolved diverse strategies to respond to high salinity in their environment. Some species actively excrete excess salt by means of specialized salt glands in their leaves, while other species excrete salt by ultrafiltration at the root cell membranes of cortical cells [11]. Hotta et al. [15] reported that the response mechanism of mangroves to salt may be linked to changes in vacuolar size. Moreover, accumulation of compatible solutes and induction of antioxidative enzymes constitute other biochemical mechanisms of mangroves against high salinity [13]. Some reports studied the effect on photosynthetic parameters such as the rate of photosynthesis, stomatal conductance [12,16], and chloroplast structure and function [17]. In addition, some studies investigated the changes in gene expressions under salt stress [18][19][20][21]. Tanaka et al. [22] reported that the gene of vacuolar Na + /H + antiporter from Bruguiera sexangula played an important role in cellular salinity adjustments. Miyama et al. [23] identified 14,842 expressed sequence tags from leaves and roots of B. gymnorrhiza under high salinity or hormone treatments. The mRNA expressions of Cu-Zn SOD, catalase and ferritin in response to salt stress in A. marina were studied and their role in oxidative stress response was confirmed [24]. The transcriptional response to high salinity and hyperosmotic stress in B. gymnorrhiza was investigated using the microarray approach. Eight hundred sixty-five genes showed significant differential expression under salt and osmotic stress [25]. Proteomic responses to salinity have been studied in various herbaceous plants including rice [1,[26][27][28], canola [4], soybean [29], wheat [30], barley [31], the model plant Arabidopsis thaliana [32,33], cucumber [34], and the facultative model halophyte Salicornia europaea [35]. Understanding how different levels of protein abundance form the basis of salt tolerance mechanisms in mangroves will shed new light and give a new dimension to salt stress research. To date, few studies have been dedicated to observing the effects of salt stress on salt-tolerant xylophytes. However, two studies reported effects of long term salt stress (12 d and 45 d, respectively) on the abundance of proteins in mangrove, B. gymnorrhiza (L.) Lam [36,37]. Tada and Kashimura [36] reported that fructose-1,6-bisphosphate (FBP) aldolase and osmotin were found related to salt tolerance in B. gymnorrhiza roots. Zhu et al. [37] reported that photosynthesis-related proteins and antioxidant enzymes in the leaves were up-regulated by 200 mM NaCl and down-regulated by 500 mM NaCl suggesting that the salt-responsive mechanisms in B. gymnorrhiza at these NaCl concentrations were different.
K. candel is one of the most important species of mangrove around the coasts of South and Southeast Asia from western India to Borneo. It has developed various ways to adapt and respond to changes in concentrations of salinity in the environment. However, to our knowledge, no information is available describing how K. candel responds to short-term (3 days) exposure to NaCl at the level of protein expression. In the present study, proteome analysis was used to identify the mechanisms responsible for the response of K. candel to salt stress. The objective of the current study is to characterize specific metabolic and regulatory mechanisms of salt tolerance in K. candel. These proteomic data contribute significantly to our understanding of protein alteration in this salt-tolerant xylophyta. The results give insights into the molecular mechanism in responses to salinity stress in K. candel seedlings.

Results
Changes in SOD and DHAR activities and H 2 O 2 and O 2 2 contents Induction of antioxidant enzymes is an important protective mechanism for minimizing oxidative damage from salt stress. Analysis of SOD indicated significant changes in activity upon salt treatment. The SOD activity peaked in response to 450 mM NaCl (356% of the control) ( Figure 1A), whereas the DHAR activity peaked at 300 mM (155% of the control) ( Figure 1B). Furthermore, at 600 mM NaCl, the SOD levels were still significantly higher than the control (150 mM) value, whereas, with DHAR ( Figure 1B), the 600 mM value is not significantly different from the 150 mM activity. High salinity concentration leads to the production of large amounts of H 2 O 2 and O 2 2 . An increase in the content of H 2 O 2 was detected with increasing salinity levels ( Figure 1C). H 2 O 2 content reached up to 198% at 600 mM NaCl when compared with the control ( Figure 1C). However, O 2 2 contents obviously increased only by 25% under 600 mM salt treatment, but no significantly different between 450 mM and 600 mM salt-treated seedling leaves ( Figure 1D). Na + and K + ion content analysis Na + concentrations in K. candel leaves were affected by salinity. Compared with the control plants, the Na + concentration in leaves increased slightly after salt treatment for 3 d (Figure 2A). Salinity did not significantly affect the K + content in K. candel leaves under salt treatments in this study ( Figure 2A). Additionally, K + /Na + ratios only decreased slightly with increasing salt content ( Figure 2B).

Proteomic and hierarchical clustering analysis
Proteins extracted from K. candel leaves following NaCl treatment were separated by 2-DE. More than 900 protein spots were detected in each gel by ImageMaster software (Figure 3). Fifty-three differentially expressed protein spots showed two-fold increases in abundance. MS analysis of the protein spots resulted in the identification of 48 proteins. The identified proteins are listed in Table 1 and Figure 4. In this study, all identified proteins were categorized into eight functional groups using the MapMan ontology as shown in Figure 5.
A total of 48 salt-responsive proteins were submitted to a hierarchical clustering to group proteins showing similar expression patterns under salt treatment. Two main clusters were formed ( Figure 6): one cluster included 13 proteins whose abundance decreased under 600 mM NaCl treatment compared with the non-saline; the other cluster contained 35 up-regulated proteins. Examples for proteins that were decreased under severe salinity conditions are a chlorophyll a-b binding protein (CAB) 2 (spot no. 7), chlorophyll A/B binding protein (CAB) (spot no. 37), oxygen evolving enhancer protein 2 (OEE2) (spot no. 43), whose abundance increased under 300-450 mM NaCl treatment but decreased under 600 mM NaCl treatment, respectively. These changes in protein abundance may imply that photosynthesis is down-regulated under high salt conditions. From the increased cluster tree, most of the proteins were up-regulated with the increase of salinity. These proteins are mainly involved in carbohydrate metabolism and energy, protein metabolism, and signal transduction. For instance, the proteins involved in carbohydrate metabolism and energy (spot nos. 4, 6, 17, 18, 19, 20, 22, 25, 27, 34 and 39) were increased significantly by salt adaptation treatment compared with control. In addition, this cluster also comprised other salt inducible proteins, such as photosynthesis related proteins (spot nos. 13, 14, 16, 31 and 35) and a detoxifying and antioxidant related enzyme (spot no. 45).

Immunoblot analysis for DHAR and HSC70
In the current study, the accuracy of 2-DE analysis was further validated by immunoblot analysis. Proteins of K. candel leaves were separated by one-dimensional SDS-PAGE, and immunoblot analysis was performed for DHAR and heat shock cognate protein 70 (HSC70) (Figure 7). In agreement with the changes in protein abundance observed by 2-DE, DHAR showed an increased amount in response to 300 and 450 mM NaCl treatment ( Figure 7A). HSC70 immunoblot analysis revealed an increase in the amount of cross-reacting polypeptide bands in response to high salinity ( Figure 7B).

Discussion
Although there have been two previous reports about proteins related to salt tolerance in mangrove (B. gymnorrhiza), only 3 and 10 proteins were identified, respectively. Tada and Kashimura [36] identified FBP-aldolase, osmotin, and a novel protein in the root. Zhu et al. [37] reported that salt tolerance to 200 mM NaCl was due to increased expression of RuBisCO activase, glutathione transferase, and heat shock proteins (HSPs), which improved the salt tolerance of B. gymnorrhiza. A reduction in the abundance of the above proteins was observed after treatment with 500 mM NaCl. Our study has revealed that additional important proteins are related to salt tolerance in the mangrove plant K. candel. Forty-eight differentially expressed proteins were identified that are known to be involved in several cellular processes such as photosynthesis, respiratory and energy metabolism, detoxification and antioxidation, as well as signal transduction.

Proteins involved in photosynthesis
Photosynthesis is sensitive to be affected by salinity among the primary metabolism in high plant [38]. Proteomic analysis revealed that a several proteins associated with photosynthesis was differentially expressed upon salt stress ( Figure 8). As shown in Table 1, 11 enzymes involved in photosynthesis were positively identified. Of these, 3 enzymes (spot nos. 7, 37, 43) have important roles for light-dependent reactions; the other 8 enzymes (spot nos. 4,5,6,14,16,13,31,35) take part in the Calvin cycle. All 11 proteins were up-regulated under 300 mM and 450 mM NaCl stress. For light-dependent reaction related proteins, the expression level of OEE2 (spot no. 43), CAB 2, chloroplastic (spot no. 7) and CAB (spot no. 37) were slightly up-regulated by exposure to 300 mM and 450 mM NaCl but decreased dramatically in response to severe stress (600 mM NaCl). Previous studies reported that OEE, consisting of OEE1, OEE2, and OEE3, play an important role in the light-induced oxidation of water in  photosystem II (PSII) of plants [39]. However, these subunits in PSII complex can be easily dissociated under salt stress [39]. Upregulation of OEE2 has been reported in Bruguiera gymnorrhiza in response to salt stress, which suggests that it might be needed to repair the injury of the PSII complex and to maintain the oxygen evolution reaction [36]. CAB 2 (spot no. 7), a component of the light-harvesting complex of photosystem I (PSI), facilitates light absorption and transfer of the excitation energy to reaction centers for the reduction of NADP + to NADPH [40]. As to Calvin cycle related proteins, RuBisCO large subunit (spot nos. 31 and 35), RuBisCO large subunit-binding protein subunit beta (spot no. 13) and RuBisCO subunit binding-protein alpha subunit (spot nos. 14 and 16) were all significantly increased in abundance under all salt treatments. RuBisCO subunit binding-protein alpha subunit is important in RuBisCO complex assembly [41]. RuBisCO large subunit-binding protein subunit beta (ruba) (spot no. 13) is related to RuBisCO activation [42]. The chloroplast-localized protein transketolase (TK) (TargetP [43]; spot nos. 4, 5, and 6), which located in chloroplast by subcellular prediction tool, which is involved in the regeneration phase of the Calvin cycle, was also up-regulated under salt stress. The above results suggested that K. candel could withstand up to 450 mM NaCl stress possibly through the up-regulation proteins related to the light-dependent reactions, which in turn provides adequate amounts of energy equivalents necessary for the Calvin cycle and other processes important during salt stress. In addition, the up-regulation of the Calvin cycle produces more photosynthetic products, such as sucrose and starch, to improve plant salt tolerance [44].

Proteins related to carbohydrate and energy metabolism
Large amounts of energy are needed for the growth and development of K. candel under salt stress. This energy is mainly produced through carbohydrate metabolism, such as glycolysis (EMP) and tricarboxylic acid cycle (TCA) [27,45,46]. Fifteen differential expressed proteins in K. candel leaves under salt stress catalyze several steps in these pathways ( Figure 8). 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (PGAM) (spot no. 27) and fructokinase-1 (FRK) (spot no. 32) are enzymes of EMP. PGAM was up-regulated up to 600 mM NaCl stress while FRK reached maximum abundance under 450 mM salt concentration. FRK catalyzes the transfer of a phosphate group from ATP to fructose in glycolysis and is the most important gateway in the control of sugar influx into EMP [47]. Furthermore, three protein spots representing aconitate hydratase (AH) (spot no. 1), succinate dehydrogenase (SD) (spot no. 25), and malate dehydrogenase (MD) (spot no. 34) were found to be upregulated. The first two enzymes are key enzymes in the TCA cycle. Thus, the increase of FRK under NaCl along with the other enzymes of EMP-TCA in this study would contribute to glucose breakdown for energy generation to cope with salt stress. In addition, mitochondrial F1-ATPase beta subunit (spot nos. 18 and 19), ATP synthase CF1 alpha subunit (spot no. 20), and F1 ATPase (spot no. 22), involving in ATP synthesis [42], were up- Figure 3. Representative 2-DE gel images of K. candel leaves treated with NaCl. An equal amount (1.5 mg) of total proteins was loaded on each gel strip (pH 4-7). After IEF, 12.5% SDS-PAGE gels were used for second dimension separation. Protein spots were visualized using CBB staining. The 2-DE maps of proteins from leaves of the control samples (150 mM NaCl) and the NaCl-treated samples (300, 450, and 600 mM) are presented. Proteins differentially regulated in response to salinity are numbered in pairs of control and NaCl-treated maps. Arrows indicate the 48 spots that showed significant changes in the control and NaCl-treated samples. Identification of these protein spots by MALDI-TOF-TOF-MS/MS is marked with arrows in (A) and given in Table 1. doi:10.1371/journal.pone.0083141.g003 regulated under salt stress in this study. ATP, the main source of energy, is indispensable for many metabolism pathways in higher plants. The energy requirements in response to external stress may considerably increase [48]. The up-regulated ATP synthesis   indicates that ATP formation is one of the strategies of plants to cope with salt stress. The results above indicated that EMP-TCA activity coupling with ATPase in K. candel leaves was enhanced suggesting that the respiratory metabolism in K. candel was increased under salt stress. Increased EMP-TCA activity and ATP synthesis imply that salt stress forces the plant to remobilize energy to cope with salt stress [49]. Together with the amplification of the light reactions of photosynthesis, this may insure the continuous generation of ATP and NAD(P)H necessary to mediate the enhanced salt resistance in K. candel [35,50]. Thus, the species seem to derive its ability to improve stress tolerance through the adjustment of its-energy metabolism.

Proteins associated with detoxification and antioxidation
Vacuolar H + -ATPase transports protons across the tonoplast, resulting in the formation of a proton gradient. The resulting gradient provides the driving force for active Na + transport into the vacuole [51], and prevents the cytoplasm from reaching toxic Na + levels. This sequestration of Na + into the vacuole is a crucial and effective strategy for reducing Na + concentration in cytoplasm and regulating cell osmosis in plant [34]. In the present study, both the Na + concentration (Figure 2A) and the expression of vacuolar H + -ATPase (spot 2) were increased ( Figure 4) and K + /Na + ratios ( Figure 2B) only decreased slightly with increasing salt content as the NaCl treatment progressed in leaves under salt stress. These results were consistent with the reports of a study by Wang et al. [35]. In the present study, K. candel is likely to have an ability to sequester Na + into vacuole and maintain K + homeostasis under NaCl stress. This active Na + efflux requires a H + gradient across the vacuolar membrane generated by stimulating protein expression of the vacuolar H + -ATPase [52], suggesting that up regulation of vacuolar H + -ATPase might play a vital role in salinity tolerance of K. candel.
Salt stress induces reactive oxygen species (ROS) accumulation which may lead to oxidative stress, and high NaCl concentration is harmful to plant cell components [6,53]. In plants, however, ROS may be considered as signaling molecules to increase antioxidant enzymes for adapting to high salt levels [4]. With further increases in salt levels, the detoxification roles of oxidant-tolerant enzymes may dominate ROS signaling effects, indicating that the plant can use detoxifying and antioxidant enzymes to respond to high salinity [35]. Spot no. 45 showed homology with chloroplast SOD. The function of SOD is to catalyze the conversion of O 2 2 to H 2 O 2 and O 2 during various stresses, which is deemed to be one of the first lines of defense against free radical damage in plant cells [54]. Accumulation of SOD in response to salt stress has been reported to play a protective role in canola [4] and S. europaea [35]. In this study, SOD levels increased in response to salinity, with a more pronounced increase at 450 mM NaCl and 600 mM NaCl ( Figure 4). As a result, O 2 2 content was not significantly increased at 300 and 450 mM NaCl, and only slightly increased under high salt stress (600 mM NaCl), suggesting that salt-tolerant K. candel an increased capacity for scavenging O 2 2 ( Figure 1D). Furthermore, we detected an increase in the levels of DHAR1 (spot no. 36) in response to 300 and 450 mM NaCl in our proteomics (Figure 4). This increase was confirmed using Western blot analysis ( Figure 7A) esearch with privious ions. The previous report indicated that this protein was up-regulated under salt stress [31]. Increases in DHAR abundance may be a result of H 2 O 2 removal through the production of ascorbic acid during stress [55]. DHAR is frequently designated as an enzyme to protect against oxidative stress in plants [56]. Previous studies indicated that the antioxidative defense system as a whole was induced during salt stress for scavenging ROS [6,57]. Mandhania  [58] and Yan et al. [59] reported that antioxidant enzymes are upregulated at the protein level by salt stress in both, wheat and rice.
In the present study, H 2 O 2 content remained low during treatments with up 300 mM to 450 mM NaCl, but increased obviously at 600 mM NaCl ( Figure 1C). This is consistent with our findings that SOD and DHAR activities and protein levels increase during exposure of up to 450 mM NaCl ( Figure 1A and B). These results support the idea that functionally active antioxidant enzymes, SOD and DHAR, could be used to enhance resistance up to 450 mM salt stress in K. candel.

Chaperones
Salt stress results in protein misfolding or unfolding, which injures plant cells. To avoid these, cells produce molecular chaperones, such as the members of HSPs, which assist protein folding or assembly and prevent irreversible protein aggregation by maintaining native conformations during salt stress [32,34,35,45]. Under adverse conditions, HSPs can protect plants against stress by refolding proteins to reestablish normal protein conformation and maintain cellular homeostasis [60]. Previous studies reported that HSC 70 was implicated in a variety of cellular processes, including the folding of nascent chain polypeptides or the import/translocation of mitochondrial or chloroplast precursor proteins [60,61]. Another report indicated that HSP 60, a mitochondrial chaperone, plays a vital role in the transport of proteins from the cytoplasm into the mitochondrial matrix and in the refolding of proteins, thus preventing protein aggregation when the mitochondria are subjected to stress [62]. In this study, Non-cell-autonomous heat shock cognate protein 70 (spot no. 9), high molecular weight HSP (spot no. 10), HSC 70 (spot no. 11), HSP, putative (spot no. 12), and HSP 60 (spot no. 21) were identified. These proteins were all up-regulated by exposure to high salinity, suggesting that the proteins play a crucial role in aiding the folding and assembly proteins under salt tolerance in K. candel seedlings (Figure 8). These results are similar with the report by Zhu et al. [37] in mangroves plant, Bruguiera gymnorhiza. This was further confirmed by an increase in protein abundance in response to salt-treatment as determined by Western blot ( Figure 7B).

Proteins involved in signal transduction
One of the proteins that increased abundantly during salt stress is a 14-3-3-like protein (spot no. 44) (Figure 4). In plants, the 14-3-3 proteins, a highly conserved family, are known to be involved in responses to diverse stresses including salinity [49,63]. The biological roles of 14-3-3 complexes are in the regulation of primary metabolism, signal transduction, and subcellular and defense reactions [64]. They are also recognized as positive regulators of plasma membrane H + -ATPase in the regulation of ion transport and cytoplasmic pH [65,66]. Moreover, 14-3-3 proteins have been implicated in various signal transduction pathways through controlling the activities of kinases and phosphatases [67,68], which suggests that 14-3-3 proteins regulate multiple pathways involved in salt stress responses in higher plants [49]. As shown in Figure 4, calreticulin (CRT) (spot no. 30) was up-regulated in response to salt treatment. CRT, one of the most important calcium-binding proteins, is involved in calcium signaling in the endoplasmic reticulum during the stress response in plants [60,[69][70][71][72]. Therefore, the results indicated that upregulation of 14-3-3-like proteins and CRT might play roles in signal transduction in K. candel under salt stress.

Proteometabolism
Disulfide isomerase (DI) (spot no. 15) is an enzyme that participates in disulfide bonds formation and breakage between cysteine residues when proteins folding, which was up-regulated in this study (Figure 8) [73,74]. These reactions will lead to the rearrangement of disulfide bonds in a single protein that exist intra-molecularly. Proteasome, which involves in regulating the particular protein concentration, can degrade unneeded or damaged proteins in plant cells. In the present study, proteasome subunit beta type 6, 9, putative (spot no. 3) was up-regulated by 300 and 450 mM NaCl but down-regulated by 600 mM NaCl, suggesting that degradation of unneeded, damaged, and misfolded proteins by the proteasome pathway was active in plant resistance to salt toxicity under at least 450 mM concentration.

Conclusions
In the present study, we provided a comprehensive proteome dynamics of the leaves in the woody halophyte K. candel under salt stress. Forty eight differentially expressed proteins, showing more than a 2-fold change in abundance, were identified. As a result, we gained new information about proteins in K. candel and their role in the stress response. First, proteins involved in light-dependent reactions, Calvin cycle and respiration were up-regulated to improve salt resistance under moderate NaCl treatment (300-450 mM), but some of them were down-regulated under high salt stress (600 mM NaCl). Their function could be to maintain photosynthetic electron flow and to provide energy equivalents necessary for repairs. The second strategy involved the upregulation of proteins leading to an energy remobilization in K. candel under all NaCl treatments. Third, vacuolar H + -ATPase played a vital role in Na + detoxification in the plant cell, while upregulation of SOD and DHAR prevented the accumulation of ROS. Our proteomic data revealed that a series of exquisite biochemical mechanisms for salt tolerance of K. candel which enable this species to withstand up to 450 mM NaCl stress. The proteome result was corroborated by immunoblots of the representative proteins and measurements of SOD and DHAR activities, as well as the content determinations of H 2 O 2 , O 2 2 , Na + , and K + /Na + . It is noteworthy that several novel saltresponsive proteins are identified in this study compared with previous reports in mangrove plants. This study has allowed us to expand our knowledge of the mechanisms by which woody halophytes respond to salinity and may assist in designing and developing more salt-tolerant plants in the future.

Plant growth conditions
Mature hypocotyls of Kandelia candel were obtained from the estuary of Luoyang river (24u589N, 118u399E), Quanzhou city, Fujian province, China, which features salinity levels ranging from 8% to 20%. We conducted the study in the experimental zone of the mangrove reserve that obeys the Article 18 of Regulations of the People's Republic of China on Nature Reserves. Similar-sized hypocotyls were chosen for the experiment, which was conducted in a sand culture system under the following conditions: a thermoperiod of 30 until four leaves had fully expanded. Subsequently, the seedlings were subjected for 3 d to 150 (control), 300, 450, and 600 mM NaCl in a split plot design with three replicates. The leaves were harvested and kept at 280uC. Three independent biological replicates were prepared for physiological and proteomic analyses.

Analysis of H 2 O 2 and O 2 2 content
For H 2 O 2 content, leaf tissues (1 g) were ground in liquid N 2 and then homogenized in 5 ml cold acetone. After centrifugation at 3,000 g, 4uC for 10 min, the supernatants were used for H 2 O 2 content assays. According to the method of Patterson et al. [80], H 2 O 2 content was assayed by analyzing the production of titanium-hydroperoxide complex at 410 nm. To determine the O 2 2 content, 1 g of leaf tissue was ground to a fine powder in liquid nitrogen and then homogenized in 5 mL of of extraction buffer (pH 7.8) containing 50 mM sodium phosphate, 5 mM EDTA, and 1% (w/v) PVP. After centrifugation at 10,000 g, 4uC for 20 min, the supernatants were collected and the O 2 2 content was detected O 2 2 contents was assayed using the oxidation of hydroxylamine at 530 nm as described by Wang and Luo [81].

Protein extraction
Total leaf proteins were extracted using a phenol extraction procedure [82,83]. Leaf tissues (3 g) of each sample were ground with liquid nitrogen with mortar and pestle, suspended in 12 mL of cooled extraction buffer containing 50 mM L-ascorbic acid, 100 mM KCl, 50 mM disodium tetraborate decahydrate, 0.5% (v/v) Triton X-100, 2% (v/v) b-mercaptoethanol, 2% PVP, 1 mM phenylmethylsulfonyl fluoride and 100 mM Tris-HCl, pH 8.0. An equal volume of ice-cold Tris-HCl-saturated phenol (pH 8.0) was added to the solution, vortexed and the suspension re-homogenized on ice prior to centrifugation at 5,5006g for 10 min at 4uC. Subsequently, the phenolic phase was transferred to second tube, six-fold 100 mM ammonium acetate/methanol added for an overnight incubation at 220uC, followed by centrifugation at 4uC, 20,0006g for 20 min. The pellet was rinsed with cold methanol and washed with acetone containing 0.07% (v/v) b-mercaptoethanol twice. The pellet was collected and lyophilized at 220uC. Protein concentration was determined by the Bradford assay with bovine serum albumin as the standard [79].

Two-dimensional gel electrophoresis of proteins
Two-dimensional gel electrophoresis was undertaken according to the method of Liang et al. [84] and Liu et al. [85] with the Ettan IPGphor system (GE Healthcare, Little Chalfont, UK). The leaf protein (1,500 mg) was loaded onto IPG strips (24 cm, linear gradient pH 4-7; GE Healthcare) in a rehydration tray for 12 h. Isoelectric focusing (IEF) was performed under the following conditions: 200 V for 1 h, 500 V for 1 h, 1 kV for 1 h, gradient to 8 kV for 0.5 h, and, finally, 8 kV for a total of 48,000 Vhs at 20uC. After IEF, the IPG strips were equilibrated in equilibration buffer [50 mM Tris-HCl, pH 8.8, 6 M urea, 30% (v/v) glycerol, and 2% (w/v) SDS] containing 1% (w/v) dithiothreitol for 15 min and then in equilibration buffer containing 2.5% (w/v) iodoacetamide for 15 min. The strips were transferred onto vertical 12% SDS-PAGE gels, and proteins separated at 10 mA/gel for 30 min, followed by 30 mA/gel over night. After electrophoresis, gels were visualized using Coomassie brilliant blue (CBB) R-250 staining. The CBB-stained 2-D gels were scanned using a UMAX Power Look 21006L scanner (Maxium Technologies, Taipei, China) and analyzed using Imagemaster TM 2D Platinum software version 5.0 (GE Healthcare). Relative comparison of the intensity abundance between control and NaCl-treated (three replicate samples for each group) was performed using the Student's test. The protein spots with distinct differences were regarded to have at least a 2.0fold amount of change.
In-gel tryptic digestion of proteins and MALDI-TOF-TOF/ MS analysis Protein spots were manually excised from preparative CBBstained gels and digested with sequencing-grade modified trypsin (Promega, Madison, WI, USA) following the manufacturer's protocol, then incubated at 37uC for 12 h. Tryptic peptides were redissolved in 0.8 ml of matrix solution [a-cyano-4-hydroxycinnamic acid (Sigma, St. Louis, MO, USA) in 0.1% trifluoroacetic acid, 50% acetonitrile] before application to the MALDI plate.
After air dying, samples were analyzed using a 4700 MALDI-TOF-TOF Proteomics Analyzer (Applied Bio-systems, Foster City, CA, USA). Combined MS and MS/MS spectra were submitted to MASCOT (V2.1, Matrix Science, London, UK) by GPS Explorer software (V3.6, Applied Biosystems). Database searches were used the following parameters: NCBInr database (release date: 2010.07.01); taxonomy of green plant; trypsin digest with one missing cleavage; no fixed modifications; MS tolerance of 100 ppm; MS/MS tolerance of 0.6 Da; and possible oxidation of methionine. MASCOT protein scores (based on combined MS and MS/MS spectra) greater than 75 were considered statistically significant (P#0.05). The individual MS/MS spectrum with the most statistically significant (confidence interval of 95%) ion score (based on MS/MS spectra) was accepted.

Hierarchical cluster analyses
The expression profiles of differential proteins were analyzed through two-way hierarchical clustering according to the Permut-Matrix software ( Figure 6). Rows were mean centered, and Euclidean distance and Average Linkage were used for data aggregation.

Immunoblot analysis
Protein samples (50 mg/lane) were separated using 12% onedimensional SDS-PAGE gel electrophoresis, transferred onto nitrocellulose membranes, and incubated at room temperature for 2 h with rabbit polyclonal antibodies raised against either DHAR or HSC70 proteins (Agrisera, Sweden) at 1:5,000 dilution. After washing three times with TBST buffer (0.01 M TBS, 0.1% Tween-20, pH 7.6), the membranes were exposed for 2 h at room temperature to horseradish peroxidase-conjugated goat anti-rabbit IgG at 1:300 dilution. Positive signals were visualized with 3, 39diaminobenzidine.

Statistical analysis
Data from repeated measurements are shown as mean 6 SD. Comparison of differences among the groups was carried out using Student's test. Significance was defined as P#0.05.